genome.fa.s17.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  160  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50659692--50659891	82	2.4	82	89	1	285	38	27	17	17	1.91
50659627--50659887	123	2.1	122	80	8	280	39	24	18	17	1.92
50663519--50663562	14	3.2	14	80	6	54	68	2	4	25	1.20
50669894--50670209	159	2.0	159	98	0	614	30	16	24	28	1.97
50670832--50670917	23	3.5	23	79	19	93	25	11	12	50	1.74
50670861--50670985	39	3.3	39	92	2	191	28	10	12	49	1.72
50670823--50670884	11	5.5	11	78	14	65	22	9	12	54	1.67
50673155--50673220	21	2.9	23	72	21	59	69	1	22	6	1.19
50673144--50673203	21	2.9	19	81	13	66	70	3	21	5	1.22
50675137--50675205	36	1.9	36	85	5	95	27	15	28	27	1.96
50680470--50680514	21	2.2	20	88	4	63	71	0	2	26	0.98
50696669--50696852	79	2.3	81	82	11	222	25	27	22	25	2.00
50696669--50696852	40	4.6	41	83	12	199	25	27	22	25	2.00
50704517--50704740	79	2.8	78	84	6	281	25	27	22	25	2.00
50704517--50704740	40	5.7	40	88	6	289	25	27	22	25	2.00
50712531--50712755	40	5.7	40	87	5	278	25	28	22	24	2.00
50712531--50712755	119	1.9	120	83	6	296	25	28	22	24	2.00
50717063--50717127	30	2.3	27	84	7	76	58	0	1	40	1.07
50717327--50717367	19	2.2	19	86	8	57	65	7	19	7	1.41
50717421--50717461	19	2.2	19	86	0	55	63	9	19	7	1.48
50717311--50717500	94	2.0	93	94	1	335	65	6	22	5	1.38
50718379--50718424	23	2.0	23	95	0	83	19	21	19	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50718378--50718464	21	4.1	21	80	11	97	19	21	22	35	1.96
50718378--50718464	44	2.0	41	82	6	102	19	21	22	35	1.96
50729701--50729740	19	2.2	19	86	4	55	7	10	12	70	1.35
50748332--50748378	21	2.2	22	92	3	78	21	19	38	21	1.94
50754024--50754122	42	2.4	42	91	3	155	21	29	12	37	1.89
50756052--50756140	6	16.2	6	80	13	95	50	13	1	34	1.49
50756052--50756139	38	2.3	38	84	11	110	50	13	1	35	1.50
50756048--50756139	11	8.5	11	82	12	86	50	14	1	34	1.50
50756052--50756138	33	2.7	32	84	12	106	50	13	1	34	1.50
50756064--50756145	27	3.0	28	85	7	107	51	12	2	34	1.52
50766430--50766555	66	1.9	66	91	0	207	26	23	11	37	1.90
50773634--50773685	24	2.2	24	89	0	77	55	9	1	32	1.43
50775606--50775657	24	2.2	24	89	0	77	55	9	1	32	1.43
50776655--50776713	29	2.0	29	93	0	100	16	23	10	49	1.77
50804471--50804842	186	2.0	186	100	0	744	25	8	23	43	1.82
50815671--50815740	28	2.5	27	73	15	70	47	1	0	51	1.09
50818148--50818188	20	2.0	20	86	9	57	63	7	0	29	1.21
50828097--50828135	20	2.0	19	85	5	51	35	0	17	46	1.49
50834549--50834601	19	2.9	19	76	15	58	32	0	3	64	1.12
50837437--50837473	19	2.0	19	89	5	58	13	29	0	56	1.37
50846014--50846185	45	3.8	45	86	0	218	40	18	20	20	1.92
50851130--50851166	18	2.0	20	89	10	60	43	0	5	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50851626--50851761	40	3.3	42	77	12	174	24	24	27	24	2.00
50851649--50851776	40	3.2	40	76	12	163	21	24	28	26	1.99
50851605--50851786	80	2.3	80	97	0	337	23	24	26	25	2.00
50853711--50853753	18	2.4	18	88	0	59	18	27	9	44	1.80
50854300--50854495	98	2.0	98	97	0	374	43	4	6	45	1.49
50854304--50854463	46	3.4	43	68	23	124	43	4	6	45	1.49
50856546--50856816	127	2.1	126	91	0	434	29	20	16	34	1.94
50856869--50857145	96	2.9	98	84	5	359	40	16	2	40	1.63
50862359--50862410	24	2.2	24	89	0	77	36	3	9	50	1.54
50862359--50862430	24	3.0	24	84	8	76	37	4	11	47	1.59
50866529--50866580	24	2.2	24	89	0	77	36	3	9	50	1.54
50869774--50870298	262	2.0	262	99	0	1041	42	12	14	30	1.82
50871330--50871371	21	2.0	22	86	9	61	33	9	7	50	1.62
50880513--50880547	18	2.0	17	88	5	52	28	22	17	31	1.96
50883117--50883369	89	2.9	83	78	11	231	37	15	9	37	1.80
50883522--50883696	19	9.0	20	69	10	105	62	0	5	32	1.21
50883571--50883691	11	12.2	11	66	19	52	64	0	4	30	1.18
50883522--50883651	29	4.5	29	81	6	131	61	0	5	32	1.24
50883560--50883696	50	2.8	50	74	12	131	62	0	4	32	1.20
50883882--50883920	20	2.0	20	84	0	51	28	5	0	66	1.12
50883867--50883974	9	11.7	9	68	17	53	29	3	0	65	1.16
50890430--50890476	24	2.0	24	95	0	85	34	10	17	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50891480--50891541	27	2.4	25	81	10	63	33	6	3	56	1.41
50898280--50898311	14	2.4	13	94	5	55	65	0	3	31	1.08
50898204--50898392	84	2.3	81	87	5	281	54	7	2	34	1.44
50898364--50898406	14	3.4	13	84	12	54	67	2	2	27	1.15
50901219--50901266	24	2.1	24	85	11	66	31	20	6	41	1.77
50904505--50904598	33	2.8	33	88	0	125	41	11	21	25	1.87
50907737--50907803	25	2.7	25	88	0	89	29	17	23	28	1.97
50916926--50916967	22	1.9	22	85	0	57	47	7	19	26	1.74
50918579--50918625	22	2.1	22	84	7	60	48	19	17	14	1.81
50919621--50919682	5	12.8	5	86	13	94	58	0	0	41	0.98
50919621--50919719	15	7.1	14	76	18	91	53	1	0	45	1.07
50919625--50919680	7	7.7	7	78	21	62	58	0	0	41	0.98
50919620--50919717	7	12.1	8	74	18	55	53	1	0	45	1.07
50919620--50919720	10	10.2	10	76	19	79	52	0	0	46	1.07
50920300--50920417	57	2.1	58	83	13	147	29	16	7	46	1.74
50923703--50923905	46	4.3	48	88	7	265	35	14	21	28	1.92
50923637--50923905	98	2.7	98	93	0	457	34	14	22	28	1.93
50923869--50924014	37	4.0	37	93	1	242	36	16	21	24	1.94
50925268--50925435	58	3.0	58	87	10	237	22	13	30	33	1.92
50925287--50925377	28	3.2	28	66	22	80	25	15	31	27	1.95
50925328--50925470	49	2.9	49	93	0	232	23	13	30	32	1.94
50928662--50928864	46	4.3	48	88	7	265	35	14	21	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50928596--50928864	98	2.7	98	93	0	457	34	14	22	28	1.93
50928828--50928973	37	4.0	37	93	1	242	36	16	21	24	1.94
50930598--50930657	30	2.0	30	100	0	120	43	16	16	23	1.87
50945795--50945871	39	2.0	39	89	0	118	25	18	12	42	1.86
50950394--50950432	18	2.2	18	86	4	53	79	5	2	12	1.00
50953073--50953125	24	2.2	25	89	3	81	58	0	11	30	1.33
50961210--50961264	29	2.0	27	92	7	92	54	0	3	41	1.18
50963056--50963094	18	2.2	18	90	9	62	33	5	17	43	1.72
50963846--50963900	25	2.2	25	87	3	76	34	21	20	23	1.97
50964130--50964169	15	2.4	18	80	19	52	32	0	5	62	1.17
50964361--50964449	35	2.5	35	100	0	178	34	5	14	44	1.69
50978336--50978719	192	2.0	192	92	2	637	33	11	15	39	1.83
50979059--50979108	10	4.7	10	81	13	64	68	10	0	22	1.19
50979328--50979434	6	17.8	6	100	0	214	66	0	0	33	0.92
50979951--50980021	37	1.9	37	94	0	124	54	14	9	21	1.68
50982199--50982261	26	2.4	26	89	0	90	33	12	11	42	1.78
50985902--50985933	15	2.0	17	88	11	50	25	31	25	18	1.98
50988584--50988633	21	2.3	22	89	6	75	36	6	12	46	1.66
50990081--50991674	799	2.0	801	97	1	2994	40	17	15	26	1.89
50998969--50999024	16	3.5	16	87	0	76	39	1	25	33	1.66
50999182--50999252	37	1.9	37	91	0	115	46	1	2	49	1.25
50999209--50999319	29	3.8	29	76	14	104	50	0	0	48	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50999212--50999352	43	3.3	44	76	16	136	47	0	0	51	1.05
50999220--50999327	16	7.3	15	68	21	50	49	0	0	50	1.00
51004383--51004417	11	3.2	11	100	0	70	54	0	0	45	0.99
51025847--51025897	16	3.1	17	88	8	61	54	0	1	43	1.11
51025847--51025897	10	4.8	11	88	9	63	54	0	1	43	1.11
51025857--51025897	2	20.5	2	90	9	66	51	0	2	46	1.14
51025847--51025895	14	3.7	13	86	10	64	55	0	2	42	1.11
51026727--51026800	38	2.0	38	84	7	98	56	2	1	39	1.22
51027000--51027066	21	3.1	21	74	16	57	61	4	5	28	1.39
51027471--51027519	20	2.4	22	74	22	52	65	2	2	30	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203