genome.fa.s17.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  110  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34899922--34899983	28	2.1	30	88	5	92	72	3	1	22	1.08
34900199--34900268	36	1.9	36	91	5	115	31	1	4	62	1.23
34900244--34900287	17	2.4	18	85	11	63	40	0	4	54	1.21
34900234--34900346	46	2.4	46	80	11	115	37	0	3	58	1.21
34900673--34900718	22	2.1	22	100	0	92	17	26	4	52	1.63
34904223--34904275	22	2.5	20	77	19	54	37	0	5	56	1.23
34905089--34905251	83	2.0	83	82	1	202	26	11	19	42	1.84
34906991--34907031	13	3.2	13	89	0	55	68	2	29	0	1.03
34908130--34908222	18	4.7	18	73	22	80	48	1	26	23	1.58
34908115--34908200	42	2.0	42	93	0	145	48	3	24	23	1.66
34911460--34911500	19	2.2	19	95	0	73	48	12	7	31	1.68
34912082--34912157	38	2.0	38	94	2	136	6	22	13	57	1.58
34916135--34916345	41	5.2	41	83	2	257	20	18	27	33	1.96
34916135--34916345	81	2.6	80	81	4	262	20	18	27	33	1.96
34916362--34916437	40	1.9	40	86	5	109	19	21	23	35	1.96
34916243--34916446	105	1.9	105	82	5	252	21	20	26	32	1.97
34921387--34921417	15	2.1	15	93	0	53	48	0	32	19	1.49
34921685--34921929	43	5.7	43	83	4	266	21	19	31	28	1.97
34921660--34921929	86	3.2	84	82	4	301	21	18	30	29	1.97
34926938--34926980	7	6.1	7	78	10	52	2	18	0	79	0.85
34926926--34926978	20	2.6	21	82	8	65	3	20	0	75	0.96
34931809--34931860	24	2.2	24	85	0	68	53	9	3	32	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34938468--34938501	17	2.0	17	100	0	68	29	11	11	47	1.76
34940184--34940229	24	1.9	24	86	8	67	47	4	6	41	1.49
34940195--34940246	24	2.2	24	82	0	59	50	5	3	40	1.45
34944610--34944661	24	2.2	24	86	6	70	48	7	3	40	1.50
34945684--34945725	20	2.0	21	90	9	68	26	7	33	33	1.83
34948005--34948418	108	3.9	108	92	0	681	32	15	18	34	1.92
34953090--34953253	9	17.7	9	65	15	59	63	3	3	30	1.25
34953230--34953263	18	1.9	17	88	5	50	67	8	2	20	1.31
34956820--34956874	7	7.7	7	86	10	67	32	0	0	67	0.91
34956799--34956873	20	3.8	20	76	10	75	34	0	0	65	0.93
34959674--34959814	41	3.4	42	88	3	196	34	21	20	22	1.97
34960165--34960204	21	1.9	21	89	0	62	7	45	20	27	1.78
34966291--34966529	9	27.4	9	67	16	103	33	2	17	46	1.61
34966344--34966408	25	2.8	25	77	15	77	36	0	18	44	1.50
34966325--34966461	41	3.2	42	75	11	125	35	1	17	45	1.57
34966603--34966646	14	3.1	15	81	18	58	38	2	6	52	1.41
34966548--34966687	27	5.1	27	78	13	142	34	7	4	53	1.49
34966533--34966687	84	1.9	84	90	5	244	34	7	4	53	1.50
34969149--34969202	21	2.5	22	75	19	60	46	27	3	22	1.69
34969170--34969222	14	3.7	14	78	12	54	49	22	5	22	1.71
34969221--34969265	22	2.0	22	83	8	56	48	44	2	4	1.35
34969341--34969382	15	2.9	15	80	16	52	47	28	7	16	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34969342--34969383	22	2.0	21	90	4	66	50	28	4	16	1.66
34969909--34970410	72	6.9	71	80	4	459	26	20	18	33	1.96
34970506--34970600	40	2.4	40	80	7	104	17	20	21	41	1.91
34972155--34972248	48	1.9	49	84	2	127	22	12	21	43	1.86
34976113--34976232	40	3.0	40	77	2	116	35	7	5	52	1.51
34976204--34976275	28	2.8	24	75	15	72	34	5	2	56	1.37
34976391--34976419	13	2.3	13	94	5	51	17	0	13	68	1.20
34978178--34978563	153	2.5	153	96	0	736	46	19	7	26	1.76
34978417--34978463	23	2.0	23	88	8	69	51	14	10	23	1.74
34978484--34978692	102	2.0	102	97	0	391	47	22	5	24	1.73
34980772--34980859	3	28.7	3	79	4	77	55	1	4	38	1.28
34981373--34981409	2	18.5	2	100	0	74	51	0	48	0	1.00
34981629--34981660	16	1.9	17	93	6	57	0	15	3	81	0.82
34997423--34997459	3	12.3	3	100	0	74	64	0	0	35	0.94
34999073--34999117	21	2.1	21	87	0	63	68	8	17	4	1.32
34999297--34999342	23	2.0	23	83	8	58	21	10	2	65	1.35
35002735--35002780	23	2.0	22	84	12	58	47	0	2	50	1.13
35022151--35022186	17	2.1	17	89	0	54	50	0	5	44	1.25
35023923--35024132	103	2.0	103	88	3	316	37	15	10	36	1.83
35027008--35027051	21	2.1	21	100	0	88	13	18	4	63	1.46
35028268--35028599	50	6.6	50	78	9	268	23	29	20	26	1.99
35028281--35028553	100	2.7	105	81	6	312	22	29	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35028479--35028599	48	2.5	48	93	0	206	24	30	18	26	1.98
35032635--35032693	29	2.0	29	83	0	73	38	11	8	40	1.72
35033526--35033591	29	2.3	29	82	5	82	43	4	4	46	1.44
35036650--35036754	52	2.0	52	80	7	115	43	16	9	30	1.79
35050293--35050318	5	5.2	5	100	0	52	19	0	61	19	1.35
35051262--35051310	22	2.2	23	88	3	73	36	10	0	53	1.35
35051408--35051453	21	2.1	22	84	11	60	45	0	10	43	1.39
35051925--35052135	22	9.0	23	70	23	147	39	15	11	33	1.83
35051925--35052135	95	2.2	95	92	4	347	39	15	11	33	1.83
35051925--35052135	47	4.5	47	94	3	345	39	15	11	33	1.83
35052387--35052418	14	2.2	15	94	5	57	53	25	0	21	1.46
35053063--35053186	43	2.9	43	81	11	137	31	30	19	18	1.96
35055175--35055204	15	1.9	16	93	6	53	26	10	16	46	1.78
35056891--35056922	12	2.5	13	95	5	57	34	6	0	59	1.23
35056905--35056940	18	2.0	18	89	10	56	27	2	0	69	1.02
35063348--35063401	21	2.6	21	77	13	58	55	3	1	38	1.28
35077764--35077839	22	3.5	22	81	5	73	14	30	21	34	1.93
35084594--35084698	44	2.5	40	76	15	113	31	29	4	34	1.78
35084592--35084701	45	2.6	44	81	8	131	31	29	5	33	1.80
35084680--35084749	16	4.4	16	96	0	104	32	35	0	31	1.58
35085971--35087189	610	2.0	610	99	0	2384	25	16	15	42	1.87
35088772--35088877	50	2.1	51	85	8	144	33	10	10	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35090126--35090333	91	2.3	91	92	0	335	45	3	4	46	1.39
35090248--35090308	28	2.2	28	85	5	81	45	0	3	50	1.17
35090166--35090308	44	3.2	43	69	20	121	46	2	3	48	1.31
35090337--35090548	54	3.6	58	69	19	172	42	2	4	50	1.34
35090387--35090576	66	3.1	65	68	20	197	43	2	6	47	1.44
35090349--35090646	120	2.5	120	96	0	542	43	2	5	48	1.37
35090483--35090529	16	3.0	16	78	12	53	46	0	2	51	1.13
35090422--35090609	61	3.1	61	69	17	192	43	1	6	48	1.39
35090603--35090647	16	2.8	16	83	10	56	48	0	2	48	1.13
35090858--35090890	16	2.1	16	94	0	57	24	36	3	36	1.71
35092472--35092523	16	3.2	16	94	0	86	28	0	34	36	1.58
35092738--35092779	15	2.7	16	82	14	52	52	2	0	45	1.13
35092747--35092788	15	2.9	15	82	10	52	52	0	0	47	1.00
35092736--35093004	120	2.2	121	93	3	456	49	4	2	42	1.37
35092854--35092899	16	2.9	16	78	12	51	52	2	0	45	1.13
35092854--35092908	15	3.7	15	79	13	53	52	1	0	45	1.11
35092786--35092973	61	3.1	61	68	14	181	48	6	2	42	1.42
35097159--35097189	10	3.1	10	95	0	53	67	0	0	32	0.91
35097169--35097210	17	2.4	18	84	15	61	73	0	2	23	0.94
35097557--35097598	19	2.2	19	87	8	59	42	2	0	54	1.13
35097557--35097615	18	3.2	19	83	7	68	37	1	0	61	1.07
35116781--35116817	18	2.1	18	94	0	65	37	10	24	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35124013--35124042	11	2.7	11	94	0	51	50	0	0	50	1.00
35124300--35124325	7	3.7	7	100	0	52	53	0	0	46	1.00
35124379--35124439	9	6.3	9	77	18	61	77	0	14	8	0.99
35124385--35124455	31	2.3	31	100	0	142	74	0	16	8	1.05
35126015--35126062	24	2.0	24	88	8	71	35	0	18	45	1.50
35132753--35132890	43	3.2	43	87	3	179	30	13	19	36	1.91
35132767--35132892	43	3.0	42	90	2	189	31	11	19	37	1.88
35137086--35137125	22	1.9	20	85	10	53	52	7	7	32	1.58
35138749--35138804	9	6.2	9	74	15	53	19	3	1	75	1.05
35138748--35138800	23	2.4	22	84	6	70	18	3	1	75	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203