genome.fa.s17.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  116  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36677575--36677679	10	10.6	10	73	11	56	31	2	0	64	1.14
36677654--36677701	18	2.7	18	90	9	73	20	4	0	75	0.97
36677595--36677709	10	12.4	9	69	20	51	27	3	0	67	1.12
36681314--36681353	21	1.9	21	84	0	53	30	2	10	57	1.45
36686596--36686641	15	3.1	15	81	9	58	52	0	0	47	1.00
36686760--36686822	32	2.0	32	87	0	90	44	6	6	42	1.55
36688668--36688715	19	2.5	19	83	9	62	39	4	0	56	1.19
36688713--36688756	22	2.1	20	83	8	52	36	6	2	54	1.40
36689043--36689109	29	2.3	29	79	5	73	32	8	1	56	1.39
36689079--36689116	19	2.1	19	85	5	51	31	5	2	60	1.33
36690344--36690379	19	2.0	17	89	10	54	44	16	5	33	1.71
36696559--36696620	25	2.5	26	82	7	76	24	30	14	30	1.95
36701364--36701397	17	1.9	18	88	5	52	41	2	0	55	1.15
36704751--36704865	54	2.1	54	80	6	126	22	28	25	23	1.99
36705634--36705774	40	3.5	40	81	1	158	31	16	28	23	1.96
36712578--36712608	15	2.1	15	100	0	62	29	25	19	25	1.99
36715639--36715700	29	2.1	29	94	5	108	46	6	24	22	1.75
36716184--36716242	24	2.5	24	94	0	100	18	28	18	33	1.95
36716184--36716269	24	3.6	22	85	7	73	17	26	18	37	1.93
36716254--36716324	24	2.9	24	73	10	63	19	25	21	33	1.97
36720605--36720634	13	2.3	13	94	0	51	30	6	6	56	1.51
36721436--36721473	20	1.9	20	84	10	51	42	7	10	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36731613--36731661	21	2.3	22	75	3	55	28	32	0	38	1.57
36731703--36731806	48	2.2	47	84	5	136	28	48	2	20	1.64
36732661--36732785	29	4.4	29	71	9	87	52	29	2	16	1.56
36732934--36732958	2	12.5	2	100	0	50	0	48	0	52	1.00
36740259--36740304	22	2.1	22	84	8	58	58	0	2	39	1.10
36747981--36748046	20	3.3	20	72	4	71	54	9	16	19	1.68
36747970--36748051	39	2.1	39	97	0	155	52	7	19	20	1.70
36747969--36748027	19	3.1	19	70	4	64	54	6	20	18	1.66
36748233--36748258	3	8.7	3	100	0	52	30	0	0	69	0.89
36748881--36749040	48	3.2	48	67	19	128	36	6	3	53	1.46
36748944--36748994	20	2.6	20	81	3	59	41	7	0	50	1.31
36754120--36754156	18	2.2	17	90	9	58	48	0	0	51	1.00
36757603--36757739	68	2.0	68	98	0	265	18	25	29	27	1.98
36760344--36760467	62	2.0	62	98	0	239	20	13	24	41	1.89
36764950--36765024	32	2.7	25	71	24	69	53	1	1	44	1.17
36765019--36765047	14	2.1	14	100	0	58	58	0	0	41	0.98
36765723--36765748	12	2.2	12	100	0	52	7	38	23	30	1.83
36769007--36769123	10	11.6	10	71	15	80	55	4	0	39	1.25
36769106--36769138	16	2.1	16	88	11	50	69	0	0	30	0.88
36772918--36772942	13	1.9	13	100	0	50	56	4	0	40	1.18
36773134--36773181	3	16.3	3	82	4	62	60	2	4	33	1.27
36773134--36773180	17	2.7	17	83	3	58	59	2	4	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36774174--36774333	50	3.2	49	69	8	142	25	24	20	30	1.98
36774120--36774438	101	3.2	101	91	0	514	25	23	20	31	1.98
36774120--36774384	51	5.2	50	67	10	180	26	23	19	30	1.98
36777277--36777303	12	2.2	12	100	0	54	33	40	18	7	1.78
36779432--36779503	23	3.0	23	78	17	67	59	2	16	20	1.49
36786763--36786821	3	20.0	3	80	3	66	62	3	3	30	1.28
36786763--36786809	17	2.7	17	83	3	58	59	2	4	34	1.29
36793359--36793454	10	10.9	9	64	20	51	36	2	1	60	1.15
36793355--36793391	15	2.4	16	82	17	51	35	0	0	64	0.94
36793424--36793453	15	1.9	16	93	6	53	40	0	0	60	0.97
36796538--36796614	32	2.4	32	82	0	100	45	6	23	24	1.76
36801047--36801123	32	2.4	32	80	0	91	44	6	24	24	1.77
36806098--36806137	20	2.0	21	85	5	55	30	0	27	42	1.56
36810536--36810614	40	2.0	40	94	0	140	27	15	20	36	1.92
36819087--36819136	24	2.1	24	82	14	59	52	8	2	38	1.43
36822587--36822628	18	2.3	18	87	0	57	45	9	9	35	1.69
36828792--36828846	14	3.8	14	71	23	51	58	10	0	30	1.33
36832636--36832684	24	2.0	24	100	0	98	28	26	4	40	1.74
36841062--36841106	20	2.3	19	84	7	54	24	33	11	31	1.90
36843203--36843321	25	4.7	25	68	10	80	34	21	22	21	1.97
36843338--36843391	23	2.2	25	77	12	67	33	20	27	18	1.96
36843344--36843391	23	2.1	23	88	0	69	33	18	29	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36843384--36843433	26	1.9	26	91	0	82	40	24	18	18	1.91
36846942--36847040	51	1.9	50	82	8	119	59	3	2	35	1.24
36846940--36847057	51	2.3	52	77	9	118	59	3	1	35	1.24
36850345--36850642	140	2.1	140	88	0	443	31	21	20	26	1.98
36850829--36850944	43	2.7	43	91	0	187	26	34	17	21	1.95
36850955--36850985	16	1.9	16	93	0	53	54	0	0	45	0.99
36851148--36851207	18	3.4	18	64	13	52	40	10	6	43	1.64
36855455--36856325	53	16.4	53	99	0	1733	30	13	5	51	1.63
36856563--36856623	21	3.0	21	79	18	74	32	45	0	21	1.52
36856563--36856631	34	2.0	36	88	11	108	33	44	0	21	1.53
36856563--36856634	7	10.4	7	76	8	58	34	43	0	22	1.54
36856781--36856813	14	2.3	15	94	5	59	36	33	0	30	1.58
36857217--36857491	41	6.7	41	85	0	363	26	23	23	26	2.00
36857529--36857663	39	3.4	39	80	5	119	22	20	19	37	1.95
36892062--36892102	21	2.0	21	90	0	64	19	29	21	29	1.98
36898764--36898802	21	1.9	20	84	5	51	61	5	17	15	1.51
36899433--36899473	21	2.0	21	85	9	57	31	26	2	39	1.70
36901100--36901143	18	2.4	18	80	0	52	20	22	9	47	1.78
36902525--36902961	223	2.0	223	87	1	644	27	17	16	38	1.91
36902731--36903173	124	3.5	124	86	4	568	29	16	14	38	1.89
36903260--36903328	31	2.2	32	84	7	88	37	11	0	50	1.39
36903280--36903344	31	2.2	30	83	5	78	38	20	0	41	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36907345--36907507	54	3.0	54	83	1	202	31	17	16	33	1.93
36908355--36908404	21	2.4	20	74	9	55	76	0	18	6	0.99
36908355--36908403	16	3.1	16	75	18	50	75	0	18	6	1.00
36908611--36908684	33	2.3	33	88	2	105	62	4	28	5	1.36
36914096--36914211	46	2.6	46	90	4	184	32	14	24	28	1.94
36917358--36917470	37	3.1	37	78	13	117	39	2	2	54	1.28
36917501--36917532	12	2.6	13	85	14	50	50	0	0	50	1.00
36925336--36925394	11	5.2	11	75	18	50	62	3	0	33	1.12
36936671--36936709	19	2.1	19	85	9	53	38	2	10	48	1.51
36937481--36937509	14	2.1	14	100	0	58	65	6	6	20	1.40
36939280--36939386	54	2.0	54	88	0	160	32	18	24	24	1.97
36942540--36942566	3	9.0	3	100	0	54	33	33	0	33	1.58
36946308--36946397	31	2.9	30	88	4	135	23	33	0	43	1.54
36958830--36958899	29	2.4	29	90	4	106	42	7	37	12	1.71
36960354--36960395	21	2.0	21	85	0	57	33	0	23	42	1.55
36960754--36960876	25	5.0	25	75	11	94	19	26	19	34	1.96
36960780--36960898	49	2.4	49	78	9	116	21	28	17	32	1.96
36960857--36960926	25	2.8	25	88	0	104	30	30	10	30	1.90
36962448--36963113	332	2.0	332	97	0	1251	38	16	16	28	1.90
36974644--36974703	27	2.4	23	75	17	57	0	26	6	66	1.16
36974656--36974712	24	2.2	27	84	9	75	0	24	5	70	1.08
36978378--36978434	21	2.7	20	71	10	51	33	10	8	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36985854--36985905	24	2.2	24	82	0	59	23	28	5	42	1.77
37005942--37005971	12	2.5	12	94	0	51	23	40	30	6	1.80
37008812--37008860	16	3.1	16	87	0	71	59	14	10	16	1.61
37008876--37009318	78	5.7	78	91	3	662	45	14	11	29	1.79
37013275--37013307	15	2.1	16	88	5	50	60	0	33	6	1.21
37017119--37017146	6	4.7	6	100	0	56	14	0	0	85	0.59
37037162--37037224	28	2.4	25	81	7	72	68	1	1	28	1.08
37037160--37037234	28	2.8	26	76	11	71	66	2	1	29	1.13
37037281--37037314	8	4.0	8	88	11	50	73	0	0	26	0.83
37037295--37037364	23	2.9	23	75	14	70	48	1	4	45	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203