genome.fa.s17.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  106  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33613412--33613634	40	5.6	39	81	8	209	25	21	27	25	1.99
33613492--33613669	79	2.2	80	80	3	191	25	21	28	24	1.99
33616769--33616808	19	2.2	18	86	4	53	15	2	17	65	1.39
33620901--33621382	72	6.7	72	99	0	955	42	23	8	25	1.82
33621436--33621474	10	4.1	9	86	6	51	61	2	0	35	1.10
33622391--33622506	61	1.9	58	86	8	162	50	3	3	42	1.36
33622392--33622522	61	2.2	58	84	9	158	51	3	3	41	1.35
33622482--33622574	37	2.5	35	77	16	98	52	2	3	41	1.29
33623958--33624229	109	2.5	109	99	0	535	47	9	11	31	1.72
33642571--33642659	25	3.1	30	84	12	116	42	6	24	25	1.79
33654613--33654647	6	5.7	6	90	6	52	80	0	20	0	0.72
33656125--33656416	50	5.8	50	73	0	233	27	19	26	26	1.99
33656134--33656426	100	2.9	100	89	0	424	27	20	26	25	1.99
33658545--33658601	22	2.5	22	77	11	53	24	8	0	66	1.20
33658821--33658889	36	1.9	35	82	8	86	36	7	1	55	1.37
33658983--33659008	4	6.5	4	100	0	52	26	0	0	73	0.84
33659106--33659143	20	1.9	20	84	10	51	28	10	0	60	1.30
33659177--33659502	108	3.0	108	89	4	501	31	15	18	34	1.92
33664458--33664901	89	5.0	89	83	2	448	30	24	22	23	1.99
33664458--33664931	178	2.7	177	82	4	519	29	24	21	23	1.99
33664744--33665597	89	9.6	89	88	0	1172	29	25	22	21	1.99
33668516--33668848	108	3.0	109	85	5	463	32	15	16	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33670487--33670522	11	3.4	11	84	7	56	61	2	0	36	1.11
33670762--33670807	20	2.2	20	84	3	56	54	2	2	41	1.25
33673948--33673994	9	5.0	9	82	10	58	72	2	0	25	0.96
33676387--33676430	23	1.9	23	90	0	70	40	6	0	52	1.28
33677682--33677720	21	2.0	20	85	10	53	58	2	7	30	1.39
33679346--33679376	10	3.1	10	95	0	53	0	16	19	64	1.29
33686166--33686213	22	2.2	22	82	14	55	47	4	0	47	1.21
33690109--33690146	10	3.8	10	83	13	51	39	2	0	57	1.12
33690345--33690380	15	2.4	14	86	13	54	72	0	27	0	0.85
33691447--33691498	21	2.5	21	84	6	70	9	11	40	38	1.74
33692172--33692225	28	1.9	28	88	0	81	48	18	5	27	1.70
33692354--33692407	28	1.9	28	88	0	81	48	18	5	27	1.70
33692108--33692497	182	2.1	182	99	0	762	49	22	6	21	1.73
33694171--33694200	15	2.0	15	100	0	60	40	40	6	13	1.71
33694640--33694679	18	2.2	18	90	0	62	57	20	0	22	1.41
33701905--33702273	88	4.2	88	92	0	594	20	24	26	28	1.99
33701976--33702207	44	5.3	44	64	8	130	20	23	29	26	1.99
33702264--33702888	44	14.2	44	77	6	543	28	25	16	30	1.96
33702264--33702886	132	4.7	132	90	1	973	28	25	16	30	1.96
33702272--33702886	263	2.3	263	90	1	973	28	25	15	29	1.96
33711355--33711409	15	3.8	15	85	2	69	1	21	1	74	1.01
33713436--33713470	17	2.1	17	88	0	52	25	8	5	60	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33726721--33726897	61	2.9	60	79	13	157	38	5	16	39	1.71
33727124--33727161	19	2.1	19	85	5	51	60	2	0	36	1.11
33727352--33727390	20	2.0	19	85	14	53	43	5	12	38	1.65
33736768--33736797	13	2.3	13	94	0	51	6	10	16	66	1.41
33739943--33739982	16	2.5	16	91	0	71	27	32	5	35	1.79
33760511--33760539	7	4.1	7	100	0	58	31	0	27	41	1.56
33760697--33760736	21	1.9	21	89	0	62	17	12	27	42	1.85
33760707--33760797	48	1.9	48	93	2	157	18	15	27	38	1.91
33761379--33761542	80	2.0	81	96	1	303	39	10	15	34	1.82
33769116--33769155	14	2.9	14	84	0	53	32	7	17	42	1.77
33770537--33770606	27	2.6	27	80	8	79	51	20	2	25	1.61
33770553--33770605	28	2.0	26	85	7	70	56	18	0	24	1.42
33772955--33772987	8	4.0	8	96	4	57	60	24	15	0	1.35
33773780--33773876	24	4.0	24	86	0	140	38	5	45	11	1.62
33779562--33779615	15	3.7	15	78	4	58	29	18	25	25	1.98
33779567--33779625	30	2.0	30	89	0	91	32	16	25	25	1.97
33779572--33779624	15	3.5	15	78	0	61	30	16	24	28	1.97
33779737--33779961	111	2.0	112	92	0	371	34	14	19	32	1.91
33780196--33780230	18	1.9	18	94	0	61	22	14	34	28	1.93
33780214--33780331	28	4.1	29	80	5	98	19	15	33	31	1.93
33780241--33780331	14	6.4	14	75	9	85	16	13	37	32	1.87
33780376--33780414	19	2.1	19	90	0	60	33	25	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33786923--33786970	5	9.6	5	95	0	87	58	18	2	20	1.49
33792177--33792245	22	3.0	24	82	6	70	17	31	18	31	1.94
33792190--33792245	22	2.5	22	88	5	76	17	32	16	33	1.92
33800730--33800768	21	1.9	21	84	5	53	28	10	5	56	1.54
33801949--33801991	18	2.3	19	84	4	52	0	6	9	83	0.80
33812772--33812865	45	2.1	45	89	0	143	30	24	19	25	1.98
33812867--33813003	51	2.7	51	88	2	195	32	27	16	24	1.96
33815043--33815152	31	3.4	31	70	18	105	52	3	4	39	1.39
33815031--33815164	68	2.0	68	100	0	268	51	4	3	40	1.40
33815074--33815181	20	5.8	18	70	21	64	51	3	2	41	1.34
33815039--33815182	37	4.1	36	70	26	112	52	3	3	40	1.35
33819823--33819865	21	2.0	22	90	4	70	58	6	6	27	1.50
33833490--33833623	58	2.3	58	85	2	180	45	0	3	50	1.19
33833790--33833841	16	3.2	16	91	0	86	32	26	1	38	1.68
33835582--33835675	46	2.0	47	87	2	136	22	21	21	35	1.96
33835585--33835687	46	2.2	47	82	5	120	23	22	22	32	1.98
33835794--33835836	22	1.9	23	86	13	63	27	13	11	46	1.78
33836479--33836521	20	2.2	20	91	0	68	37	6	11	44	1.68
33848741--33848783	20	2.2	20	88	8	63	34	2	18	44	1.63
33855411--33855451	15	2.6	16	84	3	57	26	7	2	63	1.33
33856214--33856465	118	2.1	118	100	0	504	32	18	13	34	1.90
33856560--33856625	32	2.1	32	97	0	123	46	16	6	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33860643--33860819	33	5.5	33	78	13	172	44	19	6	29	1.77
33860644--33860819	64	2.7	62	83	7	219	44	19	6	28	1.77
33860644--33860806	31	5.2	31	78	12	163	44	20	7	28	1.78
33860662--33860808	63	2.3	64	90	1	233	44	19	8	27	1.79
33861167--33861420	76	3.3	78	83	6	295	40	18	3	37	1.69
33861215--33861420	80	2.6	77	84	6	265	42	18	3	35	1.67
33866949--33867008	30	2.0	30	96	0	111	51	10	13	25	1.71
33867231--33867268	6	6.2	6	93	6	67	15	15	0	68	1.22
33873335--33873365	16	1.9	16	93	0	53	70	9	9	9	1.33
33874309--33874351	21	2.0	21	90	0	68	44	11	11	32	1.77
33878323--33878363	21	2.0	21	90	0	64	29	21	29	19	1.98
33881344--33881389	20	2.5	18	78	21	51	54	0	0	45	0.99
33890271--33890469	28	7.1	28	85	0	236	29	26	11	33	1.90
33890271--33890472	56	3.6	56	86	0	260	29	25	10	34	1.90
33893701--33893844	76	1.9	76	87	4	211	34	18	22	25	1.96
33893680--33893856	75	2.4	76	82	3	225	36	18	22	23	1.95
33898726--33899018	101	2.9	100	84	7	398	28	21	18	32	1.96
33899943--33900194	102	2.4	101	78	13	246	32	16	18	32	1.93
33906847--33907010	31	5.4	30	70	18	115	32	21	25	20	1.98
33906907--33907014	31	3.5	31	81	5	137	31	23	25	19	1.98
33917350--33917404	21	2.7	20	83	8	65	60	12	16	10	1.60
33917690--33917830	57	2.5	54	81	11	160	43	2	2	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33917706--33917830	55	2.2	56	84	9	157	44	2	3	49	1.31
33918252--33918349	27	3.5	28	93	6	164	38	13	0	47	1.42
33918352--33918377	9	2.9	9	100	0	52	92	7	0	0	0.39
33918397--33918453	27	2.2	26	93	3	96	26	31	26	15	1.96
33918952--33919012	19	3.3	18	76	4	59	42	8	0	49	1.32
33918960--33919012	18	2.9	18	75	11	54	41	9	0	49	1.35
33919579--33919675	27	3.5	27	94	5	160	47	0	13	39	1.43
33921481--33921683	106	1.9	107	85	3	284	34	21	15	28	1.94
33922502--33922704	106	1.9	107	87	3	302	27	16	20	35	1.94
33924101--33924143	19	2.3	18	84	15	52	23	23	11	41	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203