genome.fa.s17.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  73  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23276034--23276165	58	2.2	61	85	7	175	43	3	3	50	1.35
23277717--23277762	22	2.1	22	91	0	74	45	19	19	15	1.85
23278468--23278591	63	2.1	58	81	7	140	26	21	21	29	1.99
23279760--23279823	27	2.4	27	79	10	69	32	14	9	43	1.77
23283549--23283576	12	2.3	12	100	0	56	35	0	21	42	1.53
23287473--23287534	28	2.2	27	86	11	81	40	9	1	48	1.46
23298613--23298694	42	1.9	43	85	2	112	30	13	28	28	1.94
23299596--23299724	49	2.6	49	92	3	215	30	19	23	27	1.98
23300500--23300544	6	7.7	6	97	2	83	15	0	0	84	0.62
23301629--23301682	19	2.8	19	97	0	99	37	9	16	37	1.81
23301629--23301705	19	3.7	22	89	6	76	36	9	15	38	1.79
23302582--23302623	19	2.2	20	86	4	59	33	7	9	50	1.62
23306677--23306709	6	5.7	6	92	7	59	84	0	15	0	0.61
23307912--23308355	44	10.1	44	74	9	316	27	15	26	30	1.96
23307945--23308232	87	3.3	88	85	2	337	28	16	27	28	1.97
23307912--23308355	132	3.4	132	84	3	452	27	15	26	30	1.96
23308120--23308357	89	2.7	88	83	5	259	28	15	26	28	1.96
23307912--23308357	220	2.0	219	96	0	829	27	15	26	30	1.96
23310362--23310403	19	2.2	20	86	4	59	33	7	9	50	1.62
23311328--23311389	28	2.2	27	86	11	81	40	9	1	48	1.46
23311673--23311721	14	3.6	13	86	10	71	18	0	2	79	0.83
23314213--23314252	21	1.9	21	85	10	55	60	2	5	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23315519--23315615	30	3.3	30	82	4	99	45	19	6	28	1.74
23319535--23319580	3	15.3	3	95	0	83	67	30	0	2	1.03
23327148--23327318	93	1.8	93	92	0	288	30	14	11	43	1.80
23328005--23328034	3	10.3	3	92	7	53	0	36	0	63	0.95
23329815--23329865	22	2.3	23	83	6	61	58	7	0	33	1.27
23354421--23354513	45	2.1	45	95	0	168	33	18	19	29	1.95
23354519--23354705	51	3.7	50	83	4	250	31	28	17	23	1.97
23354517--23354701	101	1.8	101	90	3	300	31	28	17	23	1.97
23356634--23356673	21	1.9	21	94	0	71	15	32	17	35	1.91
23356634--23356681	21	2.3	21	88	0	69	16	29	16	37	1.91
23357924--23357962	19	2.1	19	85	4	53	56	2	15	25	1.52
23359653--23359940	87	3.3	87	84	1	326	36	18	20	25	1.94
23364068--23364442	113	3.3	113	100	0	750	24	18	10	46	1.81
23366219--23366288	25	2.8	25	88	0	104	27	24	22	25	2.00
23371494--23371556	25	2.5	26	79	7	76	25	19	23	31	1.98
23371566--23371626	25	2.4	24	76	15	61	26	27	19	26	1.99
23377223--23377343	42	2.9	42	84	7	165	28	27	15	28	1.96
23379846--23379881	18	1.9	19	88	5	56	33	19	2	44	1.65
23401739--23401799	21	2.8	21	75	5	59	55	4	6	32	1.47
23401889--23401928	21	1.9	21	100	0	80	40	7	10	42	1.67
23404106--23404156	24	2.1	24	100	0	102	39	17	15	27	1.90
23406102--23406198	41	2.4	42	85	5	135	34	13	19	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23408722--23408796	19	3.8	19	89	6	123	36	10	17	36	1.84
23422770--23422807	20	1.9	20	88	0	58	31	10	10	47	1.72
23428567--23429701	88	12.9	88	97	0	2099	24	23	27	24	2.00
23431624--23431648	9	2.8	9	100	0	50	48	0	8	44	1.32
23434791--23434887	49	2.0	48	85	2	131	28	17	10	43	1.82
23435431--23435548	55	2.1	56	89	4	186	43	11	14	31	1.80
23435448--23435641	48	4.0	47	81	8	194	44	13	16	25	1.84
23435503--23435603	46	2.2	46	90	1	157	49	13	12	23	1.77
23435730--23435853	25	5.2	24	69	23	84	60	2	3	33	1.26
23435793--23435858	28	2.4	26	80	16	71	60	1	1	36	1.15
23441291--23442276	213	4.6	213	99	0	1945	40	9	8	40	1.69
23442273--23442416	9	16.9	9	76	10	133	44	23	2	29	1.65
23442274--23442404	25	5.2	25	84	1	127	44	23	2	29	1.66
23447879--23447944	21	3.1	21	82	0	69	34	19	42	3	1.67
23447909--23447977	12	6.0	12	80	10	72	37	18	39	4	1.71
23448416--23448729	42	7.4	42	85	7	395	25	22	21	29	1.99
23448416--23448710	85	3.5	84	86	8	395	25	22	21	30	1.99
23452771--23452825	22	2.4	22	84	9	65	34	5	5	54	1.46
23453928--23453983	18	3.1	18	76	20	62	21	3	5	69	1.24
23457287--23457345	30	2.0	29	86	3	82	20	37	0	42	1.52
23459199--23459231	11	3.0	11	91	8	50	48	0	6	45	1.27
23461599--23461647	22	2.3	20	82	6	53	53	2	2	42	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23461925--23461959	18	2.0	18	94	5	63	54	0	0	45	0.99
23464487--23467734	434	7.6	433	81	5	3583	35	13	15	34	1.87
23469210--23469256	22	2.0	23	88	8	69	21	6	0	72	1.07
23470346--23470396	25	2.1	25	85	3	68	31	9	15	43	1.80
23475446--23475629	73	2.5	73	91	1	280	32	18	19	29	1.95
23475541--23475889	86	4.0	85	78	7	364	36	18	17	27	1.93
23475801--23475943	73	2.0	73	90	0	223	28	25	18	26	1.98
23475799--23476046	77	3.2	79	81	5	217	31	20	18	29	1.96
23475502--23476347	333	2.6	325	85	6	1118	33	19	17	29	1.94
23476133--23476512	72	5.2	72	90	3	532	35	18	15	30	1.93
23476628--23476769	72	2.0	73	92	1	241	39	23	14	21	1.91
23476800--23477205	75	5.4	74	85	6	487	31	21	15	32	1.94
23477223--23477398	71	2.5	71	85	3	214	34	22	14	28	1.93
23489875--23489947	21	3.5	20	77	18	69	61	1	6	30	1.30
23489890--23489932	15	2.9	15	78	21	54	65	0	4	30	1.13
23493227--23493299	36	2.0	36	100	0	146	45	19	10	24	1.82
23495471--23496515	94	11.3	94	82	4	1138	33	18	21	26	1.96
23495546--23496241	44	14.9	44	64	18	196	34	17	21	26	1.96
23495471--23496569	187	5.9	188	80	5	1157	34	18	21	26	1.96
23495471--23496514	281	3.8	280	81	4	1124	33	18	21	26	1.96
23496145--23496500	93	4.0	84	74	13	277	33	19	20	25	1.97
23497091--23497137	24	1.9	25	82	4	60	70	10	17	2	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23497151--23497175	12	2.1	12	100	0	50	84	0	8	8	0.79
23498230--23498281	27	1.9	27	88	0	77	19	9	0	71	1.13
23501449--23501516	3	22.7	3	83	0	82	64	4	2	27	1.27
23502999--23503148	50	3.0	50	73	7	146	29	18	19	32	1.96
23503342--23503982	132	4.9	132	90	0	964	27	24	18	30	1.98
23503997--23504107	44	2.5	46	76	7	129	22	24	24	28	1.99
23503969--23504106	45	3.1	45	76	6	145	21	24	23	30	1.99
23505092--23505154	30	2.1	30	100	0	126	22	12	26	38	1.90
23505374--23505434	1	61.0	1	73	0	50	1	9	1	86	0.70
23505377--23505422	9	4.9	9	92	7	74	0	13	0	86	0.56
23505372--23505434	13	4.7	13	79	14	65	1	11	1	85	0.73
23505374--23505434	9	5.6	11	81	16	58	1	9	1	86	0.70
23505374--23505434	22	2.8	21	87	7	86	1	9	1	86	0.70
23508115--23508166	19	2.7	20	82	5	63	46	11	17	25	1.81
23510307--23510389	3	27.7	3	85	0	103	62	2	3	31	1.25
23511134--23511175	21	2.0	22	85	4	59	71	7	9	11	1.31
23511591--23515018	434	7.9	433	85	2	4310	35	13	15	35	1.88
23511602--23515014	867	3.9	864	85	3	4322	35	13	15	35	1.88
23523992--23524025	18	1.9	18	88	5	52	55	2	2	38	1.30
23527816--23527867	26	2.0	26	81	11	61	65	3	1	28	1.21
23530100--23530173	37	2.0	38	86	7	107	56	1	4	37	1.27
23530142--23530188	17	2.6	18	78	18	53	65	0	4	29	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23539049--23539092	21	2.1	21	83	8	54	36	0	6	56	1.26
23556481--23556515	18	2.0	17	88	5	52	54	0	0	45	0.99
23556599--23556635	16	2.2	17	86	13	51	54	0	2	43	1.14
23556496--23556686	61	3.2	61	70	14	196	47	6	2	42	1.43
23556719--23556755	16	2.2	17	86	13	51	54	0	2	43	1.14
23556461--23556756	120	2.5	120	96	1	540	47	4	3	44	1.39
23556763--23556976	91	2.4	91	94	0	374	45	3	3	47	1.37
23556738--23556976	47	5.2	46	67	21	119	46	2	3	47	1.35
23557057--23557096	14	2.9	14	84	0	53	35	7	15	42	1.75
23557065--23557131	34	1.9	35	84	3	91	34	8	10	46	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203