genome.fa.s17.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  141  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44864078--44864102	12	2.1	12	100	0	50	60	0	40	0	0.97
44866313--44866496	40	4.7	40	80	8	200	25	22	27	25	2.00
44866365--44866529	79	2.1	79	81	8	185	26	20	27	25	1.99
44868039--44868064	11	2.4	11	100	0	52	92	0	7	0	0.39
44871676--44871706	15	2.1	15	93	0	53	35	6	35	22	1.80
44874721--44874802	43	1.9	43	84	0	110	26	20	1	51	1.55
44874760--44874797	18	2.2	17	86	9	51	15	26	0	57	1.38
44891336--44891388	21	2.5	21	90	0	79	32	20	20	26	1.98
44902003--44902241	75	3.2	74	86	3	334	23	19	24	32	1.97
44903816--44903841	13	2.0	13	100	0	52	53	7	15	23	1.67
44913984--44914064	41	2.0	42	92	2	137	20	27	33	18	1.96
44925367--44925402	18	1.9	19	88	5	56	72	19	2	5	1.17
44927895--44927972	39	2.0	39	89	0	120	33	12	32	21	1.91
44929641--44929727	26	3.4	25	72	21	74	34	4	3	57	1.36
44929695--44929756	19	3.0	21	76	11	65	41	3	0	54	1.16
44929774--44929864	25	3.7	24	77	14	87	23	1	3	72	1.06
44929771--44929841	12	6.2	11	78	18	74	23	0	1	74	0.90
44929772--44929840	11	6.1	10	79	17	57	24	0	1	73	0.91
44934409--44934506	41	2.4	41	86	5	144	26	23	23	26	2.00
44936745--44936774	11	2.7	11	94	0	51	43	16	3	36	1.65
44937847--44937959	51	2.2	51	80	12	117	38	13	6	42	1.69
44941104--44941164	31	1.9	33	87	12	92	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44945572--44945638	25	2.7	25	84	6	75	20	26	20	31	1.98
44945592--44945694	25	4.2	26	80	7	99	23	24	20	32	1.98
44963253--44963325	20	4.1	20	67	29	65	46	21	24	6	1.76
44963255--44963317	31	2.0	31	100	0	126	46	22	25	6	1.75
44967960--44968963	39	25.6	39	97	1	1800	25	22	28	23	2.00
44972792--44972816	12	2.1	12	100	0	50	48	8	0	44	1.32
44973265--44973362	27	3.5	28	88	2	126	25	13	29	31	1.93
44973293--44973375	27	3.0	27	84	5	87	28	12	26	32	1.92
44981205--44981231	12	2.2	12	100	0	54	51	7	0	40	1.30
44981678--44981831	28	5.5	28	92	1	238	26	12	27	33	1.92
44983847--44983952	50	2.1	50	87	0	149	26	22	31	19	1.98
44984216--44984254	20	2.0	20	90	10	62	56	5	23	15	1.59
44986625--44986863	130	1.8	133	91	4	403	51	9	10	28	1.67
44990216--44990285	36	1.9	36	88	0	104	45	24	10	20	1.81
44997778--44998054	40	6.9	40	93	0	446	24	27	20	27	1.99
45002097--45002169	37	2.0	37	97	0	137	42	15	15	27	1.86
45002880--45002926	22	2.3	19	85	14	58	44	2	0	53	1.12
45002882--45002923	16	2.7	15	79	20	50	45	2	0	52	1.13
45003191--45003324	67	2.0	67	89	0	205	27	35	17	19	1.94
45003558--45003611	25	2.2	25	80	12	58	38	3	1	55	1.28
45010016--45010092	34	2.3	33	89	6	120	24	24	23	27	2.00
45010368--45010462	27	3.6	27	94	1	156	38	12	13	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45010550--45010604	23	2.4	23	96	0	101	23	34	29	12	1.92
45017920--45018048	27	4.8	27	94	2	199	37	14	15	31	1.88
45018727--45018788	30	2.0	31	90	3	99	54	6	16	22	1.64
45020253--45020486	50	4.7	50	88	2	319	21	31	20	25	1.98
45030112--45030355	50	4.9	50	86	1	301	21	29	22	26	1.99
45034985--45035013	12	2.3	13	94	5	51	20	6	13	58	1.58
45036237--45036271	17	2.1	17	88	0	52	31	37	25	5	1.80
45037598--45037651	26	2.2	25	83	6	65	24	22	25	27	2.00
45037605--45037656	26	2.0	26	96	0	95	21	23	26	28	1.99
45037680--45037738	25	2.3	26	80	13	70	35	20	22	22	1.96
45039145--45039273	44	2.9	44	88	1	177	41	13	23	22	1.89
45039173--45039290	45	2.6	45	83	1	112	39	14	22	22	1.91
45041437--45041611	46	3.8	46	80	1	172	32	17	20	30	1.95
45045136--45045215	30	2.7	29	83	11	92	32	21	17	28	1.96
45048385--45048646	39	6.7	40	88	7	337	24	27	22	25	2.00
45058464--45058512	21	2.3	22	79	10	57	55	26	0	18	1.43
45060236--45060346	40	2.8	40	81	8	111	10	32	23	33	1.89
45060280--45060347	20	3.4	19	68	8	55	10	35	23	30	1.88
45064278--45064347	3	23.3	3	100	0	140	32	0	0	67	0.91
45072205--45072311	48	2.2	47	82	8	126	20	13	6	59	1.55
45077578--45077631	19	2.8	19	94	0	90	37	11	16	35	1.84
45077592--45077654	19	3.0	22	84	9	69	39	7	17	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45078562--45078612	25	2.1	24	85	10	68	35	5	1	56	1.35
45082519--45082618	48	2.1	48	98	0	191	43	32	6	19	1.75
45084836--45084887	24	2.2	24	85	0	68	38	3	7	50	1.50
45088754--45088792	20	2.0	20	85	5	53	30	5	2	61	1.31
45089291--45089332	15	2.7	15	89	10	59	40	9	7	42	1.65
45090127--45090181	25	2.2	24	78	9	58	16	7	5	70	1.28
45104399--45104442	16	2.6	17	82	7	63	50	4	0	45	1.22
45104401--45104498	23	4.1	23	78	15	92	45	5	1	47	1.31
45110223--45110291	26	2.7	26	97	0	129	28	21	18	30	1.97
45112380--45112564	40	4.7	40	81	6	189	25	21	27	25	1.99
45112433--45112597	79	2.1	79	79	6	174	27	19	27	26	1.99
45115024--45115063	20	2.0	20	85	0	53	55	2	0	42	1.13
45121117--45121417	148	2.0	148	92	0	503	37	22	6	33	1.79
45123186--45123580	65	6.1	65	100	0	790	41	17	10	30	1.83
45137824--45137880	20	2.8	20	84	7	62	17	5	5	71	1.23
45137800--45137900	49	2.1	48	80	10	109	18	4	4	71	1.23
45147673--45147715	23	1.9	23	85	4	61	39	2	13	44	1.57
45149713--45149738	3	8.7	3	100	0	52	34	0	0	65	0.93
45155086--45155208	28	4.4	28	88	2	167	33	27	12	26	1.92
45160078--45160291	25	8.5	25	71	11	107	30	15	17	35	1.92
45168026--45168311	90	3.2	90	79	3	281	32	13	24	28	1.94
45168805--45168839	13	2.7	13	95	0	61	8	40	31	20	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45170095--45170123	13	2.2	13	100	0	58	44	6	24	24	1.77
45175655--45175686	16	1.9	17	93	6	57	53	6	0	40	1.26
45176041--45176091	26	2.0	26	84	0	66	27	5	11	54	1.59
45178992--45179033	21	2.0	21	100	0	84	9	23	14	52	1.71
45180890--45181201	141	2.2	141	92	0	516	34	8	28	28	1.87
45180875--45181157	47	6.1	47	97	1	518	33	9	27	28	1.88
45180893--45181197	47	6.5	47	95	0	304	33	8	28	28	1.87
45181320--45181398	37	2.1	37	90	0	122	24	18	31	25	1.98
45185387--45185461	26	2.9	26	80	2	89	29	18	12	40	1.87
45191935--45192163	50	4.5	51	86	2	203	26	20	29	24	1.99
45191982--45192177	50	3.9	50	87	0	257	25	19	31	23	1.98
45200953--45201033	42	2.0	38	84	13	101	49	1	23	25	1.58
45204439--45204666	102	2.2	101	85	3	314	21	19	27	32	1.97
45211927--45212255	102	3.2	102	87	1	473	19	19	27	33	1.96
45213577--45213667	36	2.4	36	81	13	96	39	3	6	50	1.45
45213726--45213758	12	2.8	12	90	0	57	51	3	0	45	1.16
45217103--45217219	35	3.3	35	81	1	135	41	30	11	15	1.83
45231211--45231253	21	2.0	22	86	4	61	44	23	0	32	1.54
45239005--45239046	8	5.2	8	100	0	84	35	52	0	11	1.38
45245991--45246042	23	2.3	23	93	0	86	44	28	19	7	1.78
45247600--45247668	34	2.0	34	100	0	138	39	26	8	26	1.85
45252297--45252331	18	1.9	18	94	0	61	28	14	8	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45255736--45255850	25	4.6	25	80	1	115	33	20	23	21	1.97
45259861--45259902	18	2.3	18	80	8	50	45	14	2	38	1.58
45266476--45266510	18	2.0	17	88	5	52	48	0	17	34	1.47
45275064--45275215	27	5.6	27	92	3	232	27	13	28	30	1.94
45275064--45275215	55	2.8	55	92	0	241	27	13	28	30	1.94
45305513--45305580	20	3.7	19	67	18	54	51	0	23	25	1.48
45313525--45314557	69	15.0	69	99	0	2048	39	14	9	36	1.80
45314970--45315062	26	3.6	26	85	0	114	23	24	29	22	1.99
45316925--45316975	6	8.3	6	78	4	57	15	3	5	74	1.16
45316933--45316980	19	2.6	17	87	9	60	12	6	6	75	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203