genome.fa.s17.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  188  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59793382--59793416	8	4.6	8	89	10	56	0	8	0	91	0.42
59793380--59793416	15	2.6	14	91	8	65	0	8	0	91	0.41
59808069--59808106	9	4.2	9	89	0	58	31	10	13	44	1.77
59809073--59809123	17	2.7	20	79	14	63	64	1	5	27	1.27
59809376--59809421	19	2.4	19	92	0	74	39	4	0	56	1.19
59809445--59809613	83	2.0	84	84	5	218	36	6	18	38	1.77
59811514--59811961	224	2.0	224	98	0	862	18	17	18	45	1.86
59815981--59816027	20	2.3	20	85	0	67	21	12	36	29	1.91
59817698--59817803	48	2.2	48	85	9	137	14	24	1	59	1.45
59819946--59819991	20	2.3	20	84	0	65	21	13	34	30	1.91
59827833--59827893	26	2.2	26	85	8	77	45	0	1	52	1.10
59827850--59827994	26	5.6	26	68	24	85	43	0	3	52	1.23
59827783--59828068	102	2.8	102	97	0	529	43	1	4	50	1.32
59827952--59828226	119	2.3	120	95	0	498	42	1	3	52	1.28
59828364--59828455	44	2.1	44	86	8	125	34	28	4	32	1.77
59828437--59828472	16	2.2	16	90	0	54	25	30	2	41	1.69
59828797--59828842	24	1.9	24	86	8	67	47	0	2	50	1.13
59828800--59828846	16	3.1	16	77	22	57	46	0	4	48	1.21
59828885--59828933	20	2.7	18	77	22	57	51	4	2	42	1.32
59828917--59828987	37	1.9	37	83	11	92	53	4	4	38	1.40
59834007--59834044	19	2.0	19	100	0	76	10	26	10	52	1.68
59836363--59836462	53	1.9	53	85	2	139	20	18	36	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59836470--59836539	21	3.3	21	93	0	122	21	15	37	25	1.93
59842257--59842801	47	11.6	47	93	1	912	32	8	29	29	1.87
59845108--59845192	28	3.0	28	75	16	93	35	17	23	23	1.95
59845241--59845311	28	2.6	27	72	16	74	25	18	25	30	1.98
59846162--59846224	31	2.0	31	90	0	99	20	34	14	30	1.92
59846578--59846609	7	4.7	7	96	3	57	15	12	0	71	1.14
59849381--59849405	11	2.3	11	100	0	50	64	0	0	36	0.94
59849837--59849888	20	2.5	21	87	3	70	48	1	3	46	1.31
59849878--59849993	58	1.9	58	84	6	151	43	3	2	50	1.33
59854493--59854526	11	2.9	12	86	8	52	41	2	17	38	1.65
59858162--59858345	101	1.8	102	91	5	311	25	19	25	30	1.98
59858160--59858344	51	3.7	49	83	5	219	24	18	26	29	1.98
59858268--59858348	26	3.2	26	62	28	64	24	14	27	33	1.95
59858534--59858565	16	2.0	16	93	0	55	59	0	15	25	1.36
59872480--59872537	26	2.2	26	87	6	82	27	8	6	56	1.55
59874801--59874947	35	4.2	35	76	6	111	33	19	21	25	1.97
59875722--59875957	50	4.7	50	80	3	219	27	21	27	24	1.99
59875728--59875908	100	1.8	100	85	0	254	26	20	29	23	1.99
59881611--59881742	50	2.6	50	81	0	147	25	22	28	23	2.00
59892064--59892090	11	2.5	11	100	0	54	25	0	0	74	0.83
59901047--59901079	16	2.1	16	100	0	66	18	36	6	39	1.75
59918406--59918448	12	3.5	11	82	14	50	39	0	2	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59924748--59924846	49	2.0	49	98	0	189	32	30	0	37	1.58
59925819--59925941	43	2.9	43	90	3	185	36	20	13	29	1.91
59934785--59935025	50	4.8	50	82	1	261	20	29	21	27	1.98
59939292--59939474	79	2.3	81	81	7	205	25	27	21	24	1.99
59939290--59939474	40	4.7	40	79	10	191	25	28	21	24	1.99
59947190--59947374	40	4.7	40	84	6	216	25	27	22	24	2.00
59947190--59947374	79	2.3	82	82	7	229	25	27	22	24	2.00
59950722--59951018	99	3.0	99	93	0	513	34	25	14	25	1.94
59955805--59955969	43	3.9	42	74	11	129	31	25	18	24	1.98
59960797--59960834	14	2.9	13	81	11	51	18	13	10	57	1.63
59974213--59974303	46	2.0	46	88	0	137	26	30	8	34	1.87
59974320--59974441	22	5.3	22	65	21	70	26	27	12	33	1.92
59974277--59974626	47	7.1	47	81	11	369	26	29	11	33	1.91
59974342--59974420	25	3.3	25	67	16	76	30	26	8	34	1.87
59974346--59974626	103	2.7	102	79	10	354	26	28	11	33	1.91
59974435--59974611	56	3.2	55	84	10	216	26	28	11	32	1.92
59978434--59978590	28	5.5	28	75	6	136	29	29	19	21	1.97
59978461--59978562	29	3.6	29	80	7	118	29	31	16	22	1.96
59978434--59978594	57	2.8	57	90	0	232	29	29	18	21	1.97
59978622--59978796	40	4.4	40	94	1	289	27	25	20	27	1.99
59980278--59980414	46	3.0	46	85	0	193	24	31	10	33	1.89
59980431--59980822	47	8.1	47	90	5	570	26	28	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59980478--59980552	22	3.3	22	67	17	62	28	28	12	32	1.92
59980582--59980784	103	2.0	103	96	0	370	25	29	12	33	1.92
59980535--59980822	150	1.9	150	92	0	486	26	29	11	32	1.91
59983445--59983509	15	4.4	15	78	16	73	9	13	13	63	1.53
59983441--59983509	30	2.3	31	83	14	92	8	13	17	60	1.56
59986683--59986860	27	6.6	27	84	3	205	29	28	15	26	1.96
59986704--59986859	82	1.9	81	88	3	233	29	28	15	26	1.96
59994869--59995046	27	6.6	27	84	3	205	29	28	15	26	1.96
59994890--59995045	82	1.9	81	88	3	233	29	28	15	26	1.96
59998305--59998352	25	1.9	25	95	0	87	41	16	10	31	1.82
60000302--60000344	20	2.2	20	87	8	61	6	16	0	76	0.99
60000311--60000349	20	2.0	20	94	0	69	7	12	0	79	0.93
60001229--60001265	19	1.9	19	100	0	74	43	5	21	29	1.75
60005477--60005513	18	2.1	18	100	0	74	51	0	0	48	1.00
60005598--60005641	19	2.2	20	92	4	72	50	11	11	27	1.72
60010723--60010789	34	2.0	34	88	2	100	50	1	7	40	1.39
60014067--60014099	15	2.2	15	94	0	57	27	3	15	54	1.55
60014276--60014415	57	2.4	57	81	5	158	27	20	21	31	1.98
60020606--60020678	9	7.9	9	75	11	58	72	2	6	17	1.19
60025564--60025614	22	2.3	23	80	12	61	49	13	3	33	1.61
60025643--60025697	17	3.1	19	77	12	55	61	1	1	34	1.17
60025818--60025932	5	24.0	5	69	18	66	61	0	2	34	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60029381--60029552	40	4.3	40	88	2	222	25	27	21	25	1.99
60029383--60029605	40	5.6	39	83	5	216	25	27	21	25	1.99
60029381--60029605	80	2.8	79	80	7	240	25	27	21	25	1.99
60029537--60029614	40	1.9	41	82	10	97	26	28	20	24	1.99
60035941--60036112	40	4.3	40	85	2	204	25	26	21	26	1.99
60035941--60036165	80	2.8	78	77	8	211	25	26	21	26	1.99
60036097--60036174	40	1.9	41	82	10	97	26	28	20	24	1.99
60037553--60037610	10	5.7	10	76	11	64	29	27	13	29	1.94
60037553--60037613	20	3.0	20	83	9	79	27	26	13	32	1.93
60044125--60044193	12	5.5	12	75	18	52	73	4	7	14	1.20
60044134--60044193	29	2.1	29	83	0	75	73	3	8	15	1.20
60045262--60045308	15	3.1	15	81	9	51	68	0	19	12	1.21
60045252--60045308	28	2.0	29	83	13	73	68	0	19	12	1.20
60045338--60045413	12	6.3	12	68	17	50	61	1	25	11	1.38
60045361--60045394	15	2.3	15	89	0	50	67	0	29	2	1.05
60051440--60051519	15	5.4	15	77	7	83	10	16	13	60	1.59
60051431--60051510	30	2.7	30	78	7	90	11	16	15	57	1.65
60051435--60051519	45	1.9	44	87	2	125	9	15	16	58	1.61
60053443--60053616	46	3.8	43	73	13	152	23	20	27	28	1.99
60053437--60053608	93	1.8	93	91	2	283	23	20	27	27	1.99
60063135--60063168	10	3.4	10	91	0	59	38	20	23	17	1.93
60063134--60063180	20	2.3	20	81	0	58	34	17	23	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60071204--60071292	39	2.3	39	98	0	169	29	28	22	20	1.98
60071285--60071376	39	2.4	39	85	5	125	22	27	19	30	1.98
60077028--60077116	39	2.3	39	98	0	169	29	28	22	20	1.98
60077110--60077201	39	2.4	39	85	3	123	25	22	19	32	1.97
60089945--60089988	15	3.0	14	83	9	52	63	2	25	9	1.35
60091614--60091731	50	2.3	52	86	2	168	34	15	13	36	1.87
60091600--60091731	50	2.6	51	81	3	167	35	14	12	37	1.84
60093630--60093678	17	3.0	16	73	5	53	73	0	16	10	1.09
60095363--60095461	50	1.9	52	89	4	157	32	13	13	41	1.82
60095375--60095481	52	2.1	50	84	3	133	34	14	13	37	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203