genome.fa.s17.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  145  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46136164--46136223	28	2.1	29	90	3	95	80	10	1	8	0.99
46137113--46137147	14	2.4	15	95	4	63	77	0	11	11	1.00
46137113--46137153	14	2.9	14	85	7	57	78	0	9	12	0.98
46138384--46138838	129	3.6	128	88	4	655	31	19	23	25	1.98
46139180--46139459	99	2.8	99	82	2	330	31	22	21	25	1.98
46139267--46139449	50	3.7	50	72	2	147	29	22	23	24	1.99
46139477--46139721	40	5.7	43	70	12	137	31	23	20	24	1.98
46139467--46139774	130	2.4	127	92	1	499	33	22	20	23	1.97
46139519--46139721	40	4.8	41	70	13	142	31	23	20	24	1.98
46144672--46144709	18	2.1	18	90	0	58	55	13	2	28	1.51
46144677--46144710	9	3.8	9	84	0	50	55	17	2	23	1.55
46144791--46144831	18	2.3	18	87	8	57	53	2	0	43	1.13
46144801--46144843	18	2.5	17	82	14	52	51	4	0	44	1.22
46148729--46148755	9	3.0	9	100	0	54	66	0	11	22	1.22
46150794--46150849	28	2.0	28	86	6	78	46	1	3	48	1.30
46151742--46151860	41	2.8	41	76	15	109	27	16	26	29	1.97
46151743--46151860	43	2.8	40	77	11	112	27	16	25	29	1.97
46158850--46159003	49	3.1	49	63	23	124	31	5	22	40	1.76
46160132--46160173	20	2.2	19	83	12	50	19	19	4	57	1.58
46160817--46160886	25	2.8	25	97	0	131	34	21	21	22	1.97
46163851--46163921	19	3.8	18	80	12	72	26	23	0	49	1.51
46163869--46163921	18	2.9	18	86	10	72	24	24	0	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46166132--46167646	353	4.3	353	87	1	2074	32	18	10	38	1.85
46169157--46169341	96	1.9	99	88	9	283	19	22	14	43	1.87
46179525--46179553	2	14.5	2	100	0	58	51	0	48	0	1.00
46179860--46179899	13	3.1	13	77	0	53	30	7	27	35	1.84
46180381--46180414	13	2.6	13	95	0	59	41	17	17	23	1.90
46185701--46185737	9	4.1	9	92	0	65	29	10	13	45	1.77
46185790--46185820	9	3.4	9	90	0	53	38	22	12	25	1.90
46186674--46186741	9	7.4	9	85	9	84	41	26	10	22	1.85
46186882--46186910	13	2.2	13	100	0	58	17	0	41	41	1.49
46195302--46195356	28	2.0	28	92	0	92	1	29	5	63	1.27
46195330--46195403	39	1.9	39	83	2	96	6	25	8	59	1.51
46198573--46198607	15	2.2	16	90	5	54	48	0	0	51	1.00
46198710--46198744	18	2.0	17	88	5	52	45	0	0	54	0.99
46198980--46199047	16	4.2	16	96	0	127	38	35	0	26	1.57
46199496--46199647	77	1.9	79	84	7	202	34	9	9	46	1.69
46199605--46199644	18	2.2	19	86	13	57	22	2	2	72	1.09
46201419--46201484	28	2.2	31	78	10	75	46	7	3	42	1.47
46201833--46201871	20	2.0	20	85	10	53	64	2	0	33	1.08
46202344--46202412	21	3.2	21	76	11	70	47	1	0	50	1.09
46202687--46202711	13	1.9	13	100	0	50	36	0	0	64	0.94
46202665--46202744	31	2.6	31	75	11	76	46	0	0	53	1.00
46202834--46202892	29	2.0	29	93	0	100	27	16	23	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46209268--46209516	50	4.8	50	85	4	284	20	29	24	26	1.99
46209267--46209516	100	2.4	104	88	6	357	20	29	24	26	1.99
46209611--46209642	13	2.5	13	94	0	55	56	12	0	31	1.37
46209854--46209911	30	1.9	30	89	0	89	31	24	3	41	1.71
46214044--46214099	7	8.0	7	91	0	94	71	0	25	3	1.02
46218920--46219279	44	8.1	43	75	9	251	35	18	18	28	1.94
46218916--46219270	89	4.0	89	83	2	419	35	17	18	28	1.94
46218916--46219279	133	2.7	131	77	7	351	35	17	18	28	1.94
46222569--46222601	16	2.1	16	88	11	50	33	6	6	54	1.50
46229158--46229305	43	3.5	43	84	3	174	28	26	16	29	1.97
46232257--46232626	185	2.0	185	95	1	670	35	11	20	32	1.88
46232632--46232817	50	3.8	48	84	4	248	25	20	33	19	1.96
46232636--46232817	97	1.8	99	88	3	278	26	20	33	19	1.96
46233256--46233408	45	3.4	44	78	10	148	28	15	21	33	1.94
46235034--46235136	42	2.5	42	100	0	206	35	10	4	48	1.59
46235192--46235230	19	2.1	19	85	0	51	33	10	23	33	1.88
46237621--46237661	15	2.7	15	88	3	55	65	0	2	31	1.05
46238257--46238281	3	8.3	3	100	0	50	36	0	0	64	0.94
46241121--46241162	11	3.7	12	84	9	52	35	4	4	54	1.42
46245598--46245639	18	2.3	18	83	0	57	85	2	9	2	0.77
46245607--46245666	14	4.4	14	82	4	86	81	0	16	1	0.77
46245598--46245671	28	3.0	24	79	14	87	82	1	14	1	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46245951--46246037	45	1.9	45	85	0	120	27	13	10	48	1.75
46247101--46247394	85	3.3	85	72	11	284	28	19	22	29	1.98
46247021--46247394	181	2.1	181	90	1	588	29	18	23	28	1.98
46247282--46247442	44	3.7	44	74	5	123	26	18	23	31	1.98
46247603--46247704	44	2.3	43	81	6	116	25	19	29	25	1.99
46247844--46247990	44	3.4	43	81	8	124	31	18	23	26	1.97
46247875--46248032	44	3.6	43	82	8	176	29	20	22	27	1.98
46247534--46248128	327	1.8	329	81	7	760	30	19	20	28	1.97
46248143--46248231	45	2.0	44	88	4	133	34	22	16	25	1.95
46250017--46250054	15	2.5	15	80	16	51	39	2	2	55	1.28
46250578--46251084	251	2.0	251	99	0	1005	33	13	15	37	1.87
46252444--46252779	184	1.8	184	88	1	512	44	18	9	27	1.81
46252776--46253135	186	2.0	183	92	3	598	43	17	7	31	1.76
46252776--46253169	184	2.1	183	89	2	585	43	17	8	30	1.78
46255034--46255184	75	2.0	75	89	0	230	41	9	15	33	1.80
46267626--46267658	10	3.3	10	95	0	57	48	0	0	51	1.00
46267952--46267991	20	2.0	20	90	0	62	7	27	22	42	1.80
46272273--46272332	23	2.5	24	81	10	68	25	23	20	31	1.98
46284654--46284717	30	2.1	30	83	11	78	68	1	25	4	1.17
46284660--46284709	25	2.0	25	84	7	66	66	2	26	6	1.26
46285431--46285460	9	3.3	9	90	0	51	50	0	0	50	1.00
46285463--46285538	19	3.9	20	73	15	52	32	2	0	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46287721--46287763	22	2.0	22	90	4	70	39	0	2	58	1.11
46288402--46288459	27	2.1	27	81	6	64	34	1	5	58	1.30
46290463--46290509	22	2.1	22	92	0	76	25	31	0	42	1.55
46290598--46290663	31	2.2	31	88	2	98	33	1	0	65	1.02
46295699--46295965	123	2.2	124	93	2	448	32	22	16	28	1.95
46297493--46297539	19	2.4	19	79	10	51	42	0	6	51	1.27
46300269--46300294	6	4.3	6	100	0	52	84	15	0	0	0.62
46350244--46350503	30	8.7	30	91	0	405	42	18	8	30	1.80
46354689--46354727	6	6.5	6	87	0	51	61	0	23	15	1.33
46356215--46356266	20	2.6	19	76	23	54	38	19	3	38	1.70
46356533--46356601	19	3.6	18	73	15	50	42	15	1	40	1.56
46357838--46357879	12	3.4	13	77	12	52	69	0	0	30	0.89
46357837--46357891	20	2.9	18	81	10	56	67	0	0	32	0.91
46358028--46358091	25	2.5	26	80	14	80	51	1	1	45	1.20
46358068--46358114	15	3.1	15	75	6	51	57	4	2	36	1.30
46358350--46358414	9	7.1	9	70	16	53	23	3	3	70	1.15
46358363--46358415	20	2.7	19	77	5	61	20	3	1	73	1.08
46360528--46360570	23	1.9	22	86	13	61	62	0	2	34	1.08
46360867--46360898	10	3.4	10	87	12	50	65	0	0	34	0.93
46369878--46370076	48	4.1	48	84	0	236	27	19	28	24	1.99
46375425--46375564	25	5.6	25	75	8	115	24	15	27	33	1.95
46396620--46396660	21	2.0	21	81	18	50	21	26	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46404473--46404516	11	3.7	11	77	16	52	61	9	13	15	1.56
46404473--46404525	25	2.2	24	90	6	81	60	9	13	16	1.58
46405387--46405549	87	1.9	87	87	2	238	35	22	18	23	1.95
46421090--46421165	36	2.1	36	97	0	143	47	15	10	26	1.78
46430128--46430337	40	5.3	39	89	4	242	25	21	27	25	1.99
46430075--46430337	120	2.2	120	82	4	309	25	21	27	25	1.99
46430076--46430372	80	3.7	80	81	6	230	26	21	27	24	1.99
46438078--46438287	40	5.3	39	89	4	242	25	21	27	25	1.99
46438025--46438287	120	2.2	120	82	4	309	25	21	27	25	1.99
46438026--46438322	80	3.7	80	81	6	230	26	21	27	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203