genome.fa.s17.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  32  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10689625--10689691	35	1.9	35	84	0	89	46	5	5	41	1.53
10689664--10689956	17	16.5	17	68	18	102	43	10	13	32	1.80
10689677--10689809	71	1.9	71	83	9	173	44	10	12	32	1.77
10689677--10689823	53	2.8	52	73	11	138	45	10	12	30	1.77
10689663--10689826	17	9.3	17	72	12	116	44	10	12	32	1.76
10689805--10689847	23	1.9	22	85	4	59	39	6	9	44	1.64
10689663--10689956	18	16.5	17	69	19	140	42	10	13	32	1.80
10689961--10690001	20	2.0	21	90	4	66	60	4	12	21	1.50
10690817--10690880	6	10.3	6	83	11	67	0	21	0	78	0.76
10690826--10690880	13	3.9	14	84	15	69	0	25	0	74	0.82
10690822--10690871	19	2.6	19	90	3	73	0	22	0	78	0.76
10690839--10690883	3	14.3	3	81	9	54	0	26	0	73	0.84
10691435--10691550	30	3.9	30	75	2	99	42	4	21	31	1.72
10691776--10691811	10	3.6	10	88	0	54	80	8	0	11	0.90
10694238--10694274	16	2.3	16	95	0	65	56	2	0	40	1.13
10694526--10694696	56	3.1	56	85	7	244	40	10	15	33	1.81
10695253--10695385	61	2.2	59	82	10	144	59	9	0	30	1.34
10696408--10696471	32	2.0	33	84	3	85	39	9	14	37	1.78
10696448--10696522	28	2.6	29	77	8	82	46	13	13	26	1.80
10699033--10699073	21	2.0	21	90	0	64	24	4	56	14	1.58
10702648--10702921	42	6.5	42	89	0	379	26	15	9	48	1.75
10708423--10708499	9	7.8	9	72	18	55	61	2	2	33	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10708421--10708506	19	4.3	19	70	17	59	62	3	2	31	1.24
10710016--10710043	6	4.7	6	100	0	56	53	14	0	32	1.41
10714427--10714470	23	1.9	23	90	0	70	61	15	11	11	1.57
10720237--10720294	30	1.9	30	86	6	82	32	6	3	56	1.42
10724980--10725034	18	3.1	17	74	7	56	41	1	3	52	1.29
10731049--10731096	15	3.2	15	71	11	53	41	8	22	27	1.82
10731043--10731106	30	2.1	31	91	2	103	40	6	26	26	1.79
10737159--10737220	30	2.0	31	93	3	108	40	6	27	25	1.80
10738819--10738855	16	2.2	17	95	4	67	29	0	0	70	0.88
10738975--10739100	31	4.2	30	68	19	82	27	16	10	45	1.80
10738963--10739136	90	2.0	88	84	6	226	25	15	12	45	1.81
10756285--10756315	15	2.1	15	100	0	62	32	19	22	25	1.97
10757038--10757086	6	8.2	6	93	0	80	20	34	0	44	1.52
10767262--10767348	39	2.3	37	78	9	97	37	1	1	59	1.12
10767300--10767349	20	2.4	21	80	12	59	42	0	0	58	0.98
10770874--10771063	81	2.3	81	100	0	380	37	20	13	28	1.91
10775397--10775428	9	3.6	9	91	0	55	25	12	21	40	1.88
10783420--10783510	4	22.8	4	71	14	55	24	5	0	70	1.08
10784552--10784613	14	4.5	14	77	16	51	40	0	3	56	1.15
10787021--10787116	40	2.3	42	82	3	115	23	31	29	15	1.96
10793959--10795162	88	13.7	88	92	1	1920	24	25	23	27	2.00
10794268--10794401	43	3.1	42	66	16	121	27	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10796258--10796304	21	2.2	21	88	0	67	25	38	10	25	1.88
10796398--10796450	8	6.6	8	100	0	106	11	11	0	77	1.00
10797292--10797334	8	5.4	8	83	10	61	9	0	9	81	0.88
10797292--10797335	9	5.3	9	82	17	60	9	0	9	81	0.87
10800844--10800873	12	2.6	12	94	5	53	56	0	6	36	1.26
10800894--10800923	10	3.0	10	95	0	51	43	0	6	50	1.28
10800788--10800919	67	2.0	68	84	1	176	49	2	9	39	1.47
10800883--10800920	14	2.7	14	87	0	58	44	0	7	47	1.32
10801666--10801694	6	5.0	6	91	8	51	82	0	0	17	0.66
10802458--10802499	22	1.9	22	85	9	59	30	4	0	64	1.14
10803053--10803087	18	1.9	18	88	11	54	57	0	2	40	1.14
10807975--10808080	18	5.6	18	70	14	61	30	4	4	60	1.38
10808966--10809037	38	1.9	37	85	2	99	19	19	13	47	1.83
10812091--10812141	3	17.3	3	83	4	50	56	0	1	41	1.10
10813081--10813116	8	4.5	8	100	0	72	11	11	27	50	1.72
10816738--10816775	3	12.3	3	94	5	67	31	0	0	68	0.90
10816740--10816772	16	2.1	16	100	0	66	30	0	0	69	0.88
10816738--10816777	19	2.1	19	100	0	80	32	0	0	67	0.91
10829165--10829195	16	1.9	16	93	0	53	38	3	9	48	1.52
10829715--10829885	43	4.1	43	72	6	136	32	25	14	27	1.95
10834416--10834463	25	2.0	24	88	12	71	29	20	2	47	1.61
10834781--10834861	40	2.0	40	100	0	162	39	9	25	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10836046--10836109	28	2.2	29	83	10	87	40	37	0	21	1.54
10836677--10836778	41	2.5	41	86	1	132	30	25	22	21	1.99
10844280--10844323	21	2.1	21	83	8	54	18	4	0	77	0.94
10844297--10844338	17	2.5	17	84	0	57	16	7	0	76	1.00
10844287--10844350	27	2.3	26	82	10	67	20	6	0	73	1.04
10845183--10845440	100	2.6	100	99	0	507	22	15	29	32	1.95
10849073--10849138	28	2.3	30	79	10	75	62	0	3	34	1.11
10851891--10851942	24	2.2	24	100	0	104	15	19	13	51	1.75
10852166--10852195	1	30.0	1	93	0	51	3	0	96	0	0.21
10867399--10867535	70	2.0	68	92	2	229	20	22	15	41	1.89
10871815--10871847	3	11.0	3	93	0	57	69	0	30	0	0.88
10872097--10872153	25	2.2	24	79	11	60	70	7	5	17	1.29
10872515--10872539	2	12.5	2	100	0	50	52	0	0	48	1.00
10873436--10873543	52	2.1	52	84	3	137	49	5	16	28	1.68
10876512--10876536	8	3.1	8	100	0	50	60	12	0	28	1.32
10877889--10877998	55	2.0	54	94	1	193	10	21	7	60	1.53
10879321--10879365	4	11.2	4	90	0	72	46	22	4	26	1.70
10880803--10880866	30	2.1	31	94	2	112	26	28	6	39	1.80
10880813--10880859	15	3.1	15	70	11	51	27	23	8	40	1.83
10882935--10882979	4	11.2	4	90	0	72	46	22	4	26	1.70
10884807--10884884	41	2.0	39	85	9	106	47	14	10	28	1.76
10896068--10896097	13	2.3	13	94	0	51	16	0	10	73	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10896655--10896820	83	2.0	82	88	3	244	33	7	13	46	1.70
10897230--10897266	19	2.0	19	85	15	51	64	8	5	21	1.40
10898590--10898817	115	2.0	115	97	0	431	35	14	14	35	1.87
10898870--10899079	106	2.0	100	90	5	330	31	16	13	37	1.88
10907530--10907576	21	2.2	22	92	3	78	21	38	19	21	1.94
10912188--10912234	21	2.2	22	92	3	78	21	38	19	21	1.94
10923149--10923175	13	2.1	13	100	0	54	33	29	7	29	1.85
10929030--10929119	45	2.0	45	88	0	135	45	15	15	23	1.84
10934422--10935295	30	29.1	30	99	0	1703	43	6	23	26	1.78
10939869--10939946	15	5.2	15	70	11	70	43	7	23	25	1.80
10939864--10939946	30	2.8	30	96	0	148	44	7	24	24	1.78
10940879--10940903	12	2.1	12	100	0	50	24	36	24	16	1.94
10941054--10941102	9	5.4	9	95	0	80	38	26	10	24	1.87
10946021--10946140	60	2.0	60	95	0	213	33	22	16	27	1.96
10946819--10946866	20	2.4	20	67	0	51	33	18	27	20	1.96
10947260--10947297	17	2.2	17	100	0	76	15	15	26	42	1.87
10958368--10958409	8	5.4	8	80	5	50	66	0	0	33	0.92
10958951--10959003	24	2.2	24	96	0	97	37	18	15	28	1.91
10959832--10959867	18	1.9	19	88	5	56	55	2	0	41	1.14
10960024--10960061	19	2.1	19	90	5	60	34	0	7	57	1.28
10974699--10974814	51	2.3	51	90	1	180	31	14	24	29	1.95
10979700--10979749	9	5.6	9	73	17	50	34	0	2	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10989808--10989861	18	2.9	20	84	13	71	59	3	0	37	1.15
10989809--10989857	19	2.5	20	87	6	66	63	2	0	34	1.06
10989799--10989861	18	3.5	18	72	21	60	60	3	0	36	1.13
10989854--10989893	20	2.0	20	85	4	55	50	0	2	47	1.14
10989851--10989893	18	2.4	18	76	0	50	46	0	2	51	1.13
10989918--10989956	9	4.3	9	83	9	53	51	0	0	48	1.00
10989921--10989950	8	3.6	8	91	8	51	46	0	0	53	1.00
10989918--10989950	17	1.9	17	93	0	57	48	0	0	51	1.00
10990253--10990292	21	1.9	21	90	10	64	57	10	10	22	1.61
10991139--10991180	19	2.2	19	87	8	59	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203