genome.fa.s17.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  115  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36214956--36215343	194	2.0	194	95	0	695	33	28	15	22	1.95
36217158--36217280	61	2.0	61	98	0	237	24	15	14	45	1.84
36218395--36218578	79	2.3	81	82	11	222	25	27	22	25	2.00
36218395--36218578	40	4.6	41	83	12	199	25	27	22	25	2.00
36221898--36222021	62	2.0	62	100	0	248	29	9	8	53	1.62
36222465--36222579	9	12.6	9	76	14	76	48	21	0	29	1.50
36222471--36222577	18	5.8	18	76	16	103	48	20	0	30	1.50
36222465--36222579	27	4.5	27	76	18	138	48	21	0	29	1.50
36222492--36222582	47	1.9	47	93	4	157	48	19	0	31	1.50
36222575--36222650	39	1.9	40	94	2	136	35	15	9	39	1.80
36222642--36222678	9	4.1	9	96	0	65	40	21	2	35	1.68
36222695--36222891	91	2.2	88	78	12	211	45	16	1	36	1.57
36222798--36222844	12	4.2	12	76	15	55	46	19	2	31	1.61
36222796--36222891	21	4.7	21	74	10	90	45	17	1	35	1.56
36225658--36225709	21	2.5	20	87	9	77	34	15	44	5	1.70
36225745--36225796	21	2.5	20	87	9	77	34	15	44	5	1.70
36225832--36225883	21	2.5	20	87	9	77	34	15	44	5	1.70
36225618--36225925	87	3.5	87	99	0	598	41	17	29	12	1.85
36226299--36226397	44	2.2	44	85	7	130	30	18	25	26	1.98
36226327--36226523	42	4.7	41	83	8	193	27	18	23	29	1.98
36231186--36231235	4	12.5	4	100	0	100	24	0	26	50	1.50
36235754--36235826	37	1.9	37	84	13	96	32	23	1	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36235947--36236142	51	3.9	50	74	10	184	30	27	17	25	1.97
36247601--36247659	22	2.7	22	77	12	68	37	6	0	55	1.26
36247623--36247672	18	2.8	18	84	6	66	40	6	0	54	1.25
36247765--36247834	37	2.0	37	86	8	101	35	7	0	57	1.26
36249862--36249911	26	1.9	26	84	8	66	54	8	8	30	1.58
36250240--36250301	31	2.0	31	84	6	81	53	1	3	41	1.27
36252380--36252414	8	4.4	8	96	0	61	45	0	42	11	1.40
36254437--36254465	11	2.6	11	100	0	58	31	27	17	24	1.97
36257172--36257243	5	14.8	5	74	21	64	38	1	4	55	1.28
36257201--36257243	19	2.3	19	92	8	70	41	2	0	55	1.12
36258188--36258302	44	2.6	44	85	2	149	35	13	22	27	1.92
36258188--36258321	46	3.0	45	82	4	153	35	14	23	26	1.93
36265644--36265690	19	2.5	20	76	13	55	57	4	4	34	1.38
36267404--36267450	22	2.1	23	92	4	78	36	0	19	44	1.51
36267403--36267449	12	4.1	11	81	13	51	34	0	19	46	1.50
36269041--36269084	21	2.1	21	95	0	79	47	18	20	13	1.82
36275176--36275232	21	2.7	21	97	0	105	40	17	28	14	1.88
36277541--36277579	19	2.1	19	100	0	78	48	5	5	41	1.47
36279777--36279896	42	2.9	42	80	0	123	16	24	15	44	1.86
36286692--36286781	44	2.0	44	95	0	162	26	16	13	43	1.85
36303226--36303269	20	2.2	20	87	0	61	47	0	52	0	1.00
36303223--36303268	24	1.9	24	90	0	74	47	0	52	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36314832--36314883	26	2.0	26	100	0	104	34	19	3	42	1.69
36316198--36316291	9	10.4	9	85	0	125	26	8	21	43	1.81
36329233--36329331	44	2.2	44	98	0	189	25	30	19	25	1.98
36332139--36332167	15	1.9	15	100	0	58	24	0	20	55	1.44
36335868--36336003	57	2.4	57	84	7	188	44	5	18	31	1.71
36335971--36336053	41	2.0	42	83	2	105	49	2	22	25	1.62
36340076--36340122	21	2.2	22	81	11	53	17	19	4	59	1.53
36341638--36341778	57	2.6	54	87	4	201	41	5	21	31	1.76
36341737--36341817	43	1.9	43	85	5	112	53	2	22	22	1.58
36345513--36345577	32	2.0	33	82	8	80	36	3	1	58	1.23
36359440--36359504	33	2.0	33	87	6	96	20	18	23	38	1.93
36362493--36362547	24	2.3	24	96	0	101	43	3	20	32	1.69
36366653--36366728	20	3.8	20	67	19	59	17	31	18	32	1.94
36374591--36374632	21	2.0	21	81	9	50	33	7	26	33	1.83
36377879--36377921	22	2.0	22	90	0	68	69	2	0	27	1.00
36379615--36379687	23	3.2	23	82	5	94	30	24	19	26	1.98
36386339--36386378	17	2.4	17	95	0	71	57	25	0	17	1.40
36386885--36386937	23	2.3	23	83	0	70	32	20	22	24	1.98
36388557--36388674	59	2.0	60	83	5	150	22	27	14	34	1.93
36388617--36388785	40	4.2	40	84	2	207	17	27	17	37	1.92
36388718--36388779	20	3.1	20	70	9	63	12	32	17	37	1.88
36390578--36390693	25	4.6	25	72	12	76	16	24	20	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36390636--36390718	25	3.3	25	80	12	82	21	25	19	33	1.97
36398303--36398455	73	2.1	73	90	0	234	21	22	20	35	1.96
36398555--36398626	25	2.9	26	76	13	71	23	23	18	34	1.96
36398644--36398696	25	2.1	25	82	0	61	20	26	20	32	1.98
36404021--36404061	21	2.0	21	85	9	57	26	19	21	31	1.97
36445176--36445336	51	3.1	51	61	19	116	26	20	7	45	1.77
36445167--36445373	104	2.0	104	99	0	405	27	19	7	45	1.77
36445363--36445736	188	2.0	187	97	0	712	26	24	12	36	1.92
36446017--36446171	79	2.0	79	98	0	301	34	24	10	30	1.89
36447503--36447631	49	2.6	49	86	0	168	28	15	16	39	1.89
36465899--36465947	21	2.3	20	77	16	55	18	16	26	38	1.91
36469075--36469107	16	2.1	16	94	5	59	30	0	0	69	0.88
36484272--36484303	8	4.0	8	95	0	55	59	12	0	28	1.34
36494744--36494781	20	1.9	20	88	0	58	44	0	10	44	1.38
36497747--36497775	15	1.9	15	100	0	58	34	27	13	24	1.93
36497762--36498055	27	11.0	27	75	7	201	38	19	20	22	1.94
36497762--36498134	54	7.0	54	75	8	192	37	18	20	22	1.94
36497779--36498244	81	5.8	81	78	5	232	36	18	20	24	1.95
36497960--36498252	27	10.9	27	81	0	325	34	18	21	25	1.96
36498290--36498371	24	3.5	24	77	1	76	23	3	25	47	1.68
36498546--36498745	32	6.3	32	83	2	224	19	20	22	38	1.93
36498546--36498745	64	3.1	64	84	2	251	19	20	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36498550--36498731	96	1.9	96	86	2	258	19	20	22	37	1.94
36500378--36500407	16	1.9	16	93	6	53	30	0	20	50	1.49
36502378--36502421	20	2.2	19	84	15	54	27	6	11	54	1.61
36505947--36506001	27	2.0	27	89	0	83	25	16	14	43	1.86
36512549--36513033	27	18.1	27	79	4	378	43	21	17	17	1.88
36513369--36513478	28	4.0	28	87	1	168	25	23	20	30	1.99
36525224--36525258	15	2.3	15	100	0	70	28	20	8	42	1.81
36527318--36527465	54	2.7	54	84	4	183	17	28	27	27	1.98
36527375--36527502	54	2.4	54	86	2	168	17	28	27	27	1.97
36545452--36545510	29	2.0	29	86	0	82	33	32	10	23	1.88
36554538--36554580	21	2.1	21	83	12	54	39	13	2	44	1.57
36568777--36568854	29	2.7	28	84	11	104	25	15	30	28	1.96
36568807--36569310	175	2.9	175	98	0	965	30	14	24	30	1.94
36575110--36575170	29	2.1	29	87	6	88	37	13	21	27	1.90
36575194--36575266	30	2.4	30	88	0	101	36	8	27	27	1.85
36582721--36582745	13	1.9	13	100	0	50	40	16	12	32	1.84
36582922--36582959	19	2.0	19	94	0	67	26	23	10	39	1.87
36592699--36592797	50	2.0	50	81	0	117	25	26	19	29	1.98
36597486--36597555	35	2.0	35	97	0	131	37	24	14	24	1.92
36605931--36606040	43	2.6	43	80	2	141	34	20	19	25	1.96
36607492--36607526	14	2.4	14	95	4	61	34	20	2	42	1.66
36625029--36625201	74	2.4	73	79	13	201	34	12	19	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36630829--36631143	40	7.9	40	93	2	490	25	20	27	26	1.99
36637847--36638869	40	25.6	40	97	0	1845	24	20	27	27	1.99
36654534--36654585	6	9.2	6	95	4	74	73	0	0	26	0.84
36669120--36669946	3	275.7	3	100	0	1654	0	33	0	66	0.92
36671587--36671669	3	27.7	3	83	9	107	62	1	2	33	1.16
36674613--36674648	17	2.1	17	100	0	72	30	5	22	41	1.76
36675245--36675269	11	2.3	11	100	0	50	64	8	20	8	1.46
36677558--36677658	30	3.4	28	76	11	87	31	4	1	61	1.28
36677583--36677717	30	4.7	30	74	16	108	28	2	0	68	1.09
36677596--36677695	9	10.7	9	72	15	62	28	4	1	67	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203