genome.fa.s17.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  169  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53550928--53551054	6	20.7	6	72	4	101	70	2	20	6	1.20
53552821--53552859	16	2.5	15	83	4	51	23	2	15	58	1.49
53556414--53556458	13	3.5	13	75	6	56	46	11	20	22	1.81
53556403--53556469	25	2.6	25	88	2	107	50	13	17	17	1.77
53558130--53558216	33	2.5	33	83	12	97	12	22	6	57	1.59
53558154--53558228	33	2.2	34	81	11	82	14	22	4	58	1.53
53560182--53560268	33	2.5	33	83	12	97	12	22	6	57	1.59
53560206--53560280	33	2.2	34	81	11	82	14	22	4	58	1.53
53563754--53563808	21	2.4	22	76	14	58	41	16	16	25	1.88
53565838--53565862	13	1.9	13	100	0	50	64	0	0	36	0.94
53565913--53565943	12	2.6	12	94	0	53	70	6	9	12	1.31
53566027--53566073	14	3.3	14	91	8	69	74	6	6	12	1.20
53566884--53567021	6	22.5	6	70	6	80	71	1	18	8	1.19
53566885--53566970	18	5.2	17	79	12	90	74	0	16	9	1.06
53566904--53566970	35	1.9	35	87	6	100	71	0	19	8	1.12
53566903--53567076	18	9.8	18	69	12	110	67	1	20	10	1.28
53570367--53570419	27	2.0	27	96	0	97	22	22	15	39	1.91
53571115--53571186	36	2.0	36	97	0	135	43	16	5	34	1.72
53572880--53573010	50	2.5	51	84	6	158	38	12	15	33	1.86
53582423--53582553	50	2.6	52	75	6	133	36	12	15	35	1.86
53583154--53583536	191	2.0	191	97	0	730	30	17	15	36	1.91
53585191--53585331	44	3.2	44	64	11	115	34	17	15	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53585183--53585333	51	3.2	51	63	21	137	33	16	15	35	1.90
53585174--53585368	90	2.2	90	99	0	381	33	15	14	36	1.88
53586001--53586048	25	1.9	25	87	8	71	18	22	27	31	1.97
53586667--53586696	9	3.3	9	95	0	51	40	3	10	46	1.54
53586811--53586883	25	2.9	25	84	8	103	32	9	19	38	1.84
53589155--53589193	10	3.7	10	87	12	60	74	2	7	15	1.15
53589149--53589196	12	4.3	11	87	12	71	66	2	8	22	1.29
53590192--53590223	15	2.1	16	94	5	57	71	0	21	6	1.07
53591094--53591120	12	2.2	12	100	0	54	37	11	29	22	1.89
53596681--53596724	21	2.1	21	87	8	63	40	11	11	36	1.77
53599191--53599263	25	2.9	25	84	8	103	32	9	19	38	1.84
53604099--53604360	39	6.7	40	87	7	337	25	22	27	24	2.00
53615686--53615758	35	2.1	35	100	0	146	35	5	16	42	1.71
53625345--53625393	20	2.5	20	75	0	53	42	16	20	20	1.89
53635677--53635719	14	3.1	14	100	0	86	13	27	23	34	1.93
53636885--53636915	14	2.3	13	94	5	53	48	0	6	45	1.28
53636962--53637046	28	3.1	27	72	12	75	24	12	12	49	1.76
53642657--53642808	76	2.0	76	100	0	304	34	10	7	47	1.67
53645976--53646221	132	1.9	132	91	1	404	18	20	21	39	1.92
53655812--53655850	21	1.9	21	89	5	62	10	10	5	74	1.21
53665791--53665857	33	2.0	33	100	0	134	23	17	26	31	1.97
53668097--53668287	41	4.7	41	77	4	172	35	16	27	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53668097--53668287	81	2.3	81	81	0	238	35	16	27	20	1.95
53668174--53668235	20	3.1	20	71	15	65	33	19	29	17	1.95
53675071--53675269	39	4.9	42	77	10	161	30	19	23	27	1.98
53677109--53677149	18	2.4	17	84	8	55	4	17	0	78	0.93
53680957--53680992	16	2.4	15	86	13	56	77	0	5	16	0.94
53682090--53682129	10	3.5	12	80	19	50	67	2	17	12	1.33
53696607--53696660	25	2.2	25	89	0	81	20	50	9	20	1.75
53697296--53697393	48	2.0	48	100	0	196	29	14	16	39	1.88
53699091--53699120	14	2.1	14	93	0	51	26	0	6	66	1.16
53702363--53702407	20	2.2	20	84	7	56	53	11	4	31	1.56
53715941--53715975	18	1.9	18	88	0	52	22	25	0	51	1.48
53715966--53716014	24	2.0	24	88	4	71	10	18	2	69	1.27
53732664--53733898	617	2.0	617	99	0	2452	37	17	14	30	1.90
53755101--53755351	40	6.3	40	87	4	312	29	28	19	22	1.98
53759282--53759326	19	2.5	17	82	10	54	37	11	13	37	1.80
53761625--53761671	24	1.9	25	82	4	60	42	4	25	27	1.73
53767326--53767390	19	3.5	19	87	6	89	10	21	0	67	1.20
53767351--53767459	45	2.4	45	83	11	134	12	21	0	65	1.32
53794287--53794328	17	2.5	16	82	17	50	4	19	2	73	1.12
53799158--53799196	13	3.1	12	85	10	51	30	10	2	56	1.46
53799149--53799196	25	2.0	24	87	4	69	25	8	4	62	1.41
53799141--53799197	12	4.6	12	76	6	60	26	10	3	59	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53799357--53799403	24	1.9	25	82	4	60	42	4	25	27	1.73
53800303--53800341	13	3.1	12	85	10	51	30	10	2	56	1.46
53800294--53800341	25	2.0	24	87	4	69	25	8	4	62	1.41
53800286--53800342	12	4.6	12	76	6	60	26	10	3	59	1.46
53800502--53800548	24	1.9	25	82	4	60	42	4	25	27	1.73
53808115--53808294	90	2.0	90	95	0	324	27	19	21	31	1.97
53808824--53808861	19	2.1	19	85	14	53	28	18	13	39	1.88
53815959--53816087	67	1.9	67	88	1	197	25	34	19	20	1.96
53816209--53816322	57	2.0	57	86	6	160	25	25	18	30	1.98
53819417--53819473	16	3.5	16	76	4	51	40	31	3	24	1.72
53819569--53819636	23	3.0	23	88	0	100	42	26	10	20	1.84
53820400--53820505	52	2.1	51	83	5	133	20	14	10	54	1.69
53821083--53821129	22	2.1	22	84	0	58	46	14	19	19	1.84
53821147--53821387	32	7.5	32	79	3	229	37	23	19	19	1.94
53821141--53821387	64	3.9	64	79	9	254	37	22	19	20	1.95
53821147--53821387	96	2.5	96	82	6	283	37	23	19	19	1.94
53821390--53821443	26	2.1	26	82	0	63	37	25	18	18	1.94
53821559--53821631	24	3.1	23	84	5	92	47	24	8	19	1.76
53821710--53821909	27	7.5	26	86	8	251	25	26	16	32	1.96
53821694--53821881	81	2.3	80	89	2	288	26	26	17	30	1.97
53821694--53821909	80	2.7	81	85	5	287	25	25	17	31	1.97
53823360--53823622	40	6.6	40	87	3	309	26	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53831310--53831612	80	3.8	80	88	2	387	26	28	20	24	1.99
53831340--53831612	120	2.3	120	85	4	363	27	28	20	23	1.99
53831310--53831559	40	6.3	40	94	0	376	26	28	20	23	1.99
53831544--53831621	40	1.9	41	82	10	97	26	28	21	23	1.99
53836958--53836988	12	2.7	11	90	9	53	74	0	3	22	0.96
53839312--53839389	29	2.7	28	84	11	104	25	15	30	28	1.96
53839342--53839669	174	1.9	174	97	0	620	29	14	24	30	1.95
53847568--53847718	27	5.6	26	80	4	115	26	16	28	28	1.97
53847568--53847693	54	2.3	54	82	8	148	26	16	28	28	1.97
53847595--53847744	55	2.8	54	81	6	160	27	15	30	27	1.96
53847568--53847723	82	1.9	81	81	3	188	26	16	28	28	1.96
53847595--53847744	27	5.5	27	81	3	113	27	15	30	27	1.96
53848399--53848435	19	2.0	18	89	5	56	67	0	27	5	1.12
53850270--53850308	20	1.9	21	89	5	62	25	28	12	33	1.93
53855478--53855655	27	6.6	27	84	3	205	29	28	15	26	1.96
53855499--53855654	82	1.9	81	88	3	233	29	28	15	26	1.96
53862984--53863025	17	2.5	17	92	0	66	11	4	9	73	1.22
53865052--53865111	22	2.7	23	73	19	63	66	6	0	26	1.16
53865061--53865094	4	8.0	4	90	9	50	73	2	0	23	0.97
53866448--53866500	23	2.4	22	76	20	56	9	18	1	69	1.25
53868849--53868908	22	2.7	23	73	19	63	66	6	0	26	1.16
53868858--53868891	4	8.0	4	90	9	50	73	2	0	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53874007--53874065	24	2.5	24	81	13	68	67	1	28	1	1.10
53886840--53887023	40	4.6	39	80	9	194	25	22	27	24	2.00
53886892--53887056	79	2.1	79	83	6	201	26	21	27	24	1.99
53890791--53890841	24	2.1	24	92	0	84	11	27	17	43	1.84
53891126--53891159	17	2.0	17	88	11	52	52	5	0	41	1.25
53898366--53898413	16	3.2	15	88	8	64	14	12	22	50	1.77
53898473--53898500	14	2.0	14	100	0	56	35	14	14	35	1.86
53899905--53899937	14	2.4	14	90	10	50	75	6	3	15	1.11
53900811--53900844	6	5.7	6	85	0	50	76	0	20	2	0.92
53900813--53900903	18	4.6	18	72	17	65	67	3	23	6	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203