genome.fa.s17.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  39  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12906723--12906920	108	1.8	107	88	3	299	28	16	24	29	1.97
12910053--12910271	116	1.9	117	89	0	341	42	7	10	39	1.67
12910273--12910318	22	2.2	20	88	11	67	26	0	28	45	1.54
12910302--12910449	51	2.9	51	83	9	192	31	0	21	45	1.57
12910277--12910481	23	8.5	23	74	19	170	29	0	24	45	1.57
12910277--12910508	74	3.1	73	83	9	258	29	0	25	44	1.57
12910313--12910507	52	3.8	52	78	11	170	31	0	23	44	1.57
12910371--12910551	30	6.6	29	76	18	172	27	0	26	45	1.58
12911066--12911100	18	1.9	18	94	0	61	34	8	31	25	1.86
12913607--12913664	31	1.9	30	85	3	80	43	10	5	41	1.61
12926058--12926123	32	2.1	32	100	0	132	31	25	12	30	1.92
12927384--12927536	36	4.2	36	82	0	180	18	13	51	16	1.76
12927394--12927571	72	2.5	72	81	0	176	16	13	52	16	1.74
12927528--12927621	24	3.8	24	80	9	109	11	8	60	19	1.56
12927530--12927621	48	1.9	48	93	0	157	11	8	59	19	1.58
12928143--12928172	3	10.0	3	100	0	60	0	0	66	33	0.92
12939549--12939775	110	2.1	110	98	0	436	23	14	18	43	1.87
12945606--12945631	6	4.3	6	100	0	52	80	0	19	0	0.71
12947570--12947920	192	1.8	193	84	4	485	19	11	22	47	1.81
12959993--12960029	13	2.8	13	83	0	56	13	5	0	81	0.86
12959993--12960032	6	6.3	6	85	8	53	15	5	0	80	0.88
12959994--12960030	19	1.9	20	94	5	67	16	5	0	78	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12970563--12970625	33	1.9	33	100	0	126	36	25	15	22	1.94
12973354--12973385	11	2.9	11	100	0	64	34	28	9	28	1.88
12973659--12973698	21	1.9	21	90	10	64	40	0	0	60	0.97
12981428--12981466	4	9.8	4	100	0	78	48	25	0	25	1.51
12983856--12983890	18	1.9	18	94	0	61	48	0	2	48	1.16
12984015--12984066	20	2.6	21	77	20	65	46	1	0	51	1.12
12984226--12984264	6	6.5	6	100	0	78	15	0	0	84	0.62
12988730--12988819	43	2.2	39	80	14	110	34	3	15	46	1.62
12988745--12988830	43	2.0	43	97	0	163	31	4	16	47	1.67
12989553--12989647	31	3.0	30	72	20	86	49	1	3	46	1.24
13001726--13001782	23	2.5	23	77	5	62	47	1	1	49	1.22
13002516--13002562	24	2.0	24	84	16	62	31	0	14	53	1.42
13002724--13002850	40	3.2	39	76	7	132	29	18	22	29	1.97
13003183--13003227	17	2.6	17	89	0	54	26	6	8	57	1.54
13003997--13004086	40	2.2	41	86	2	119	43	1	2	53	1.20
13006776--13006810	16	2.3	15	90	5	52	25	0	0	74	0.82
13009402--13009461	29	2.0	30	84	9	79	31	0	8	60	1.27
13014995--13015028	7	4.9	7	96	0	59	44	38	0	17	1.49
13018078--13018119	15	2.6	16	77	7	50	30	2	0	66	1.04
13021762--13021804	19	2.3	19	88	8	61	32	0	6	60	1.23
13021940--13021992	25	2.2	25	86	3	72	52	16	11	18	1.73
13025614--13025647	18	1.9	17	88	5	50	26	2	5	64	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13026926--13026971	21	2.3	21	85	14	62	47	0	4	47	1.21
13027591--13027627	18	2.1	18	100	0	74	32	13	5	48	1.65
13045628--13045678	25	2.0	25	81	7	59	64	7	0	27	1.21
13049160--13049266	56	1.9	56	84	1	142	40	24	10	25	1.86
13049801--13049855	27	2.0	27	85	0	74	38	10	16	34	1.84
13054182--13054223	19	2.2	20	83	12	52	38	2	0	59	1.10
13061388--13061445	30	1.9	31	86	10	84	32	6	13	46	1.70
13064207--13064274	30	2.3	29	95	5	127	48	10	13	27	1.74
13064657--13064690	16	2.1	16	94	0	59	17	52	5	23	1.66
13074447--13074510	30	2.1	31	88	8	96	59	9	3	28	1.44
13074540--13074582	22	2.0	22	85	0	59	58	11	11	18	1.63
13074547--13074587	11	3.7	11	80	0	55	56	9	14	19	1.66
13074548--13074597	22	2.3	22	86	6	66	60	6	16	18	1.55
13076737--13076780	20	2.2	20	95	4	79	52	15	4	27	1.63
13079042--13079090	15	3.3	15	77	11	55	36	4	0	59	1.17
13079806--13079843	19	2.0	20	89	5	60	57	2	0	39	1.12
13089205--13089252	24	2.0	23	88	11	71	41	2	4	52	1.32
13091079--13091142	30	2.1	31	82	5	78	50	1	7	40	1.41
13091089--13091146	31	1.9	31	89	3	91	44	3	6	44	1.47
13101239--13101330	47	2.0	45	87	4	130	34	3	5	56	1.38
13103429--13103454	11	2.4	11	100	0	52	26	23	0	50	1.50
13104465--13104522	20	2.8	20	80	15	64	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13104478--13104524	15	3.2	15	77	14	53	63	0	0	36	0.94
13104471--13104522	7	7.4	7	77	16	54	61	0	0	38	0.96
13105525--13105568	23	2.0	21	82	8	52	38	0	0	61	0.96
13109009--13109119	22	5.0	21	74	21	77	37	2	0	58	1.18
13109009--13109127	31	3.7	31	68	14	73	38	2	0	57	1.18
13113272--13113492	106	2.1	107	95	1	401	32	15	13	39	1.86
13115425--13115533	53	2.1	53	100	0	218	3	19	20	56	1.56
13115452--13115535	27	3.1	27	61	16	66	4	22	17	54	1.61
13127525--13127969	180	2.5	178	82	7	536	24	15	21	38	1.92
13129914--13130165	120	2.1	120	82	2	310	17	28	27	26	1.98
13130035--13130681	132	4.9	131	78	9	527	17	27	27	26	1.98
13130201--13130681	252	1.9	252	85	2	662	17	28	27	26	1.98
13132751--13132779	5	6.0	5	92	8	51	79	0	0	20	0.74
13136008--13136059	22	2.3	22	90	3	77	32	1	15	50	1.55
13136008--13136052	11	3.8	12	75	24	51	33	2	17	46	1.61
13139092--13139136	22	2.0	22	91	0	72	33	2	15	48	1.57
13140200--13140235	13	2.8	14	84	16	51	27	25	0	47	1.52
13140187--13140227	18	2.2	19	87	12	59	29	24	0	46	1.53
13140350--13140484	39	3.4	38	73	8	101	28	28	20	23	1.99
13140724--13140762	18	2.1	19	90	4	62	48	10	0	41	1.37
13142078--13142134	5	11.0	5	78	14	62	56	1	0	42	1.10
13142077--13142132	12	4.5	12	81	16	69	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13142079--13142134	26	2.2	26	90	6	69	55	1	0	42	1.10
13149424--13149453	7	4.3	7	100	0	60	0	16	13	70	1.18
13149424--13149466	21	2.0	21	82	8	52	0	16	9	74	1.06
13151401--13151455	27	2.0	27	100	0	110	47	10	7	34	1.66
13152587--13152618	10	3.2	10	100	0	64	37	50	0	12	1.41
13158322--13158389	23	3.0	24	81	12	72	27	0	5	66	1.15
13159593--13159651	30	2.0	30	82	0	73	32	6	1	59	1.34
13160832--13160872	18	2.3	19	80	16	52	65	12	0	21	1.25
13160955--13161016	30	2.1	30	90	0	97	58	11	3	27	1.48
13160985--13161610	340	1.8	339	82	7	802	40	15	12	31	1.85
13164366--13164458	42	2.2	43	85	11	122	37	7	21	33	1.82
13172054--13172286	127	1.8	127	87	0	349	42	18	10	28	1.84
13172190--13172549	191	1.9	191	87	3	528	38	19	12	29	1.88
13172368--13172665	160	1.9	160	85	5	415	38	18	12	30	1.88
13174478--13174504	13	2.1	13	100	0	54	55	0	7	37	1.28
13174522--13174554	17	1.9	17	93	0	57	51	6	3	39	1.42
13177042--13177078	12	3.0	12	92	4	56	37	0	2	59	1.12
13177042--13177080	13	3.1	13	85	7	53	38	0	2	58	1.12
13182857--13182919	12	5.3	12	78	1	65	41	1	11	46	1.49
13182856--13182910	16	3.4	16	84	0	83	40	1	10	47	1.49
13183947--13183994	18	2.4	19	76	16	53	54	10	8	27	1.63
13190156--13190214	23	2.5	23	69	2	55	59	0	1	38	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13191028--13191067	18	2.2	19	86	4	55	57	5	2	35	1.34
13196610--13196652	15	2.6	16	85	14	61	60	0	0	39	0.97
13197821--13197850	15	2.0	15	93	0	51	33	30	16	20	1.94
13198969--13199002	2	17.5	2	87	6	52	55	0	0	44	0.99
13206421--13206454	17	2.0	17	94	0	59	44	50	0	5	1.26
13211060--13211093	17	2.0	17	94	0	59	44	50	0	5	1.26
13216510--13216631	56	2.2	56	96	0	235	55	12	6	25	1.60
13217249--13217273	3	8.3	3	100	0	50	32	0	0	68	0.90
13222190--13222220	2	15.5	2	100	0	62	51	0	48	0	1.00
13228967--13229048	29	2.7	30	83	7	103	51	14	2	31	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203