genome.fa.s17.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  183  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58124363--58124524	40	4.1	39	80	5	157	33	21	16	29	1.95
58125730--58125770	21	1.9	22	90	5	66	41	0	0	58	0.98
58125818--58125860	21	2.0	21	86	0	59	27	11	13	46	1.78
58126466--58126570	53	1.9	55	86	3	151	48	6	5	39	1.53
58142975--58143127	69	2.2	69	96	0	279	39	20	18	21	1.93
58143267--58143319	27	2.0	27	92	0	88	37	15	24	22	1.92
58145705--58145826	42	2.9	43	80	7	140	32	27	18	20	1.96
58147741--58147783	18	2.4	18	80	3	52	34	20	18	25	1.96
58149675--58149772	27	3.6	27	78	0	106	32	31	20	15	1.93
58150629--58150660	7	4.6	7	92	0	55	46	34	0	18	1.49
58159490--58159528	20	2.0	20	95	5	71	25	35	0	38	1.56
58161502--58161564	31	2.0	31	90	0	99	41	11	6	41	1.66
58169296--58169430	48	2.8	47	82	4	162	31	18	16	34	1.93
58172674--58172786	59	1.9	59	88	0	172	46	8	22	23	1.79
58173060--58173114	28	2.0	28	92	0	92	30	12	32	23	1.92
58176964--58177060	43	2.3	43	81	0	113	30	15	24	28	1.96
58176986--58177087	43	2.4	42	83	3	125	28	11	27	32	1.92
58184154--58184264	43	2.6	43	78	2	134	43	20	16	19	1.88
58188660--58188701	18	2.2	20	87	8	61	50	9	2	38	1.48
58192691--58192730	5	8.0	5	100	0	80	60	0	0	40	0.97
58196794--58196983	95	2.0	95	100	0	380	49	4	5	41	1.45
58201467--58201521	26	2.2	25	93	6	94	32	1	30	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58213084--58213156	36	2.0	36	97	0	137	45	13	6	34	1.71
58218734--58218762	10	2.9	10	100	0	58	72	0	10	17	1.11
58225070--58225110	22	1.9	21	85	5	55	39	12	4	43	1.63
58231322--58231384	27	2.4	27	89	2	92	58	1	6	33	1.33
58231403--58231442	21	1.9	21	84	0	53	55	2	10	32	1.47
58233808--58234104	50	5.9	50	78	0	252	23	21	22	31	1.98
58240601--58240740	74	1.9	74	96	0	262	31	21	21	25	1.98
58241543--58241605	27	2.4	27	89	2	92	58	1	6	33	1.33
58241624--58241663	21	1.9	21	84	0	53	55	2	10	32	1.47
58241787--58241897	56	2.0	56	96	3	206	57	8	6	27	1.52
58259770--58259915	40	3.6	41	81	9	176	23	21	27	26	1.99
58264948--58265222	48	5.7	48	84	4	333	27	29	16	26	1.97
58264948--58265214	144	1.9	143	88	4	403	26	29	16	27	1.97
58269330--58269413	40	2.1	40	95	0	150	42	5	21	29	1.76
58270522--58270554	16	2.1	16	94	0	57	57	3	18	21	1.53
58279244--58279422	71	2.5	71	99	0	349	36	13	17	31	1.90
58279315--58279757	192	2.3	193	96	0	809	30	13	21	34	1.92
58279579--58280101	121	4.3	121	98	0	976	27	13	22	36	1.92
58280119--58280153	17	2.0	18	88	5	54	17	11	5	65	1.43
58280058--58280302	92	2.7	88	82	10	268	27	18	18	35	1.94
58280058--58280317	85	2.9	88	81	10	293	26	17	18	37	1.93
58280265--58280467	101	2.0	100	99	0	397	25	15	14	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58280517--58280735	54	4.1	55	89	7	333	28	16	17	37	1.91
58281006--58281107	30	3.4	31	82	5	113	29	23	3	43	1.72
58281374--58281420	17	2.8	17	84	12	62	68	0	31	0	0.90
58281371--58281420	19	2.7	20	81	12	61	68	0	32	0	0.90
58281475--58281547	3	25.0	3	75	18	57	71	0	28	0	0.87
58281478--58281506	10	2.9	10	100	0	58	62	0	37	0	0.96
58281475--58281517	13	3.5	13	82	17	56	62	0	37	0	0.95
58281502--58281548	11	4.2	11	84	10	51	78	0	21	0	0.75
58281516--58281558	19	2.4	17	81	14	50	83	0	11	4	0.78
58281624--58281662	15	2.6	14	84	8	51	84	12	2	0	0.72
58282194--58282684	17	27.8	18	69	15	226	34	11	10	43	1.76
58282205--58282258	16	3.2	16	75	14	56	35	14	9	40	1.78
58282251--58282427	74	2.4	76	82	5	200	37	12	9	41	1.75
58282194--58282685	35	13.9	35	71	14	194	34	11	10	43	1.76
58282705--58282742	16	2.3	17	81	4	51	36	15	10	36	1.82
58283990--58284234	127	1.9	128	79	7	275	28	15	18	37	1.91
58284703--58284740	3	12.7	3	100	0	76	34	0	0	65	0.93
58285939--58285980	3	14.0	3	94	0	75	64	0	2	33	1.07
58286056--58286106	21	2.5	20	78	6	66	68	0	5	25	1.12
58286334--58286405	3	23.7	3	74	2	63	58	5	2	33	1.36
58286334--58286387	24	2.2	24	93	0	90	61	5	1	31	1.30
58286418--58286452	18	1.9	18	88	0	52	71	2	0	25	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58286495--58286549	4	13.8	4	77	11	51	72	0	3	23	1.00
58286495--58286542	18	2.6	19	87	6	64	70	0	4	25	1.04
58286495--58286549	18	2.8	20	78	18	62	72	0	3	23	1.00
58286627--58286661	3	11.7	3	100	0	70	65	0	0	34	0.93
58291617--58291945	164	2.0	164	100	0	658	46	13	13	25	1.80
58302832--58302872	20	2.1	19	86	13	57	58	7	0	34	1.26
58308281--58308328	12	3.9	13	74	20	50	62	2	0	35	1.07
58311937--58311980	21	2.1	21	91	0	70	31	31	11	25	1.91
58319599--58320218	310	2.0	310	98	0	1195	33	24	8	33	1.86
58327098--58327150	24	2.2	24	82	0	70	32	3	11	52	1.55
58328546--58328587	22	1.9	22	85	0	57	23	4	4	66	1.30
58328638--58328775	70	2.0	70	100	0	276	36	14	13	36	1.85
58329921--58329986	31	2.1	32	88	2	98	54	4	12	28	1.57
58352677--58352708	16	2.0	17	88	11	50	43	3	0	53	1.16
58357917--58357999	42	2.0	42	81	9	98	21	25	37	15	1.93
58360322--58360372	23	2.2	23	78	0	57	29	19	9	41	1.84
58371126--58371381	75	3.4	75	89	1	390	29	18	21	30	1.97
58371324--58371435	54	2.0	57	89	5	176	26	15	19	38	1.91
58371381--58371609	73	3.2	72	78	5	246	31	15	18	34	1.92
58371630--58371821	75	2.6	75	90	0	294	28	18	22	29	1.98
58371467--58371783	163	1.9	162	89	3	483	29	17	20	33	1.95
58371777--58372319	87	6.5	87	86	5	583	30	17	19	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58371702--58372319	173	3.7	170	78	12	585	29	17	20	32	1.95
58372044--58372260	77	2.8	77	97	1	400	27	19	23	29	1.98
58372974--58373041	35	1.9	35	90	0	109	17	51	8	22	1.72
58375353--58375404	25	2.1	25	88	0	77	19	3	26	50	1.65
58377972--58378037	34	1.9	34	93	0	114	36	12	9	42	1.74
58386335--58386382	17	2.8	17	77	0	60	20	6	0	72	1.05
58394937--58395048	25	4.6	24	80	5	109	26	31	16	25	1.97
58394937--58395048	49	2.3	48	81	6	127	26	31	16	25	1.97
58398183--58398238	20	3.2	17	72	18	53	19	8	0	71	1.12
58400004--58400452	222	2.0	222	99	0	889	32	15	17	34	1.91
58404592--58404649	29	2.0	28	86	3	80	39	27	8	24	1.84
58408680--58408798	50	2.3	52	88	2	170	38	13	15	31	1.87
58408815--58408904	39	2.3	39	88	0	144	48	15	7	27	1.72
58412023--58412111	21	4.1	21	84	5	90	53	10	23	12	1.68
58412023--58412091	21	3.3	21	87	2	95	55	8	24	11	1.64
58416254--58416282	14	2.1	14	100	0	58	51	6	13	27	1.66
58418640--58418697	29	2.0	29	89	0	89	41	6	18	32	1.78
58421968--58422000	16	2.1	16	94	0	57	39	9	12	39	1.74
58422462--58422495	15	2.3	15	89	0	50	35	2	23	38	1.70
58423496--58423535	19	2.1	19	90	0	62	30	15	2	52	1.55
58425217--58425245	14	2.1	14	100	0	58	34	0	13	51	1.42
58425370--58425409	21	1.9	21	89	0	62	30	12	0	57	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58426002--58426026	11	2.3	11	100	0	50	64	8	0	28	1.22
58427010--58427067	21	2.7	22	89	10	93	67	17	15	0	1.24
58431405--58431450	23	2.0	23	100	0	92	34	13	13	39	1.83
58431995--58432022	14	2.0	14	100	0	56	35	7	21	35	1.81
58433181--58433238	29	2.0	29	100	0	116	37	17	13	31	1.89
58450061--58450089	12	2.4	12	100	0	58	48	0	17	34	1.47
58454969--58455039	33	2.2	33	87	5	101	43	4	0	52	1.20
58455044--58455187	7	19.7	7	67	25	68	60	4	2	32	1.30
58455054--58455091	17	2.3	17	95	4	69	50	10	0	39	1.37
58455077--58455187	28	4.0	28	76	14	88	62	3	3	30	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203