genome.fa.s17.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  150  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47740585--47740624	21	1.9	21	89	0	62	37	17	42	2	1.63
47740653--47740694	21	2.0	21	90	0	66	30	16	40	11	1.85
47741016--47741425	42	9.7	42	76	6	299	25	20	24	29	1.99
47741054--47741417	85	4.3	87	75	6	316	24	20	24	30	1.98
47750626--47750724	28	3.6	27	76	9	101	32	11	27	29	1.91
47751673--47751805	25	5.6	24	72	16	98	27	12	15	45	1.81
47751662--47751829	22	7.2	22	69	20	101	27	11	15	45	1.80
47751660--47751871	47	4.5	47	86	2	248	28	11	15	43	1.82
47757854--47757878	10	2.5	10	100	0	50	8	16	0	76	1.02
47759007--47759081	27	2.8	27	82	9	75	50	1	2	45	1.24
47759037--47759080	23	2.0	22	90	4	70	50	2	4	43	1.35
47764609--47764707	23	4.3	23	93	0	171	22	22	25	30	1.99
47766461--47766736	27	10.3	27	77	10	255	21	15	18	44	1.86
47766460--47766742	81	3.5	79	86	5	338	21	15	18	44	1.86
47769337--47769398	14	4.4	14	70	8	54	33	1	3	61	1.22
47769366--47769398	13	2.4	14	95	5	59	42	0	0	57	0.98
47770842--47770945	50	2.1	50	80	3	111	24	17	29	28	1.97
47771600--47771660	22	2.9	21	83	9	79	18	19	14	47	1.82
47772165--47772227	31	2.0	31	84	0	81	46	26	12	14	1.80
47776094--47776185	44	2.1	44	82	9	109	31	15	10	42	1.81
47777718--47777742	12	2.1	12	100	0	50	28	8	24	40	1.83
47784488--47784523	7	5.1	7	86	0	54	16	52	0	30	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47784700--47784769	36	1.9	36	85	5	97	42	15	17	24	1.88
47785409--47785445	15	2.3	17	86	9	51	35	10	16	37	1.83
47789796--47789824	14	2.0	15	93	6	51	31	13	20	34	1.92
47792244--47792300	30	1.9	30	82	7	71	40	24	3	31	1.72
47793918--47793942	12	2.1	12	100	0	50	16	24	16	44	1.86
47804082--47804136	21	2.6	21	77	11	58	32	10	9	47	1.70
47804082--47804135	22	2.5	22	79	8	58	33	11	9	46	1.71
47804717--47804750	17	2.1	16	94	5	59	32	17	5	44	1.73
47804500--47805317	299	2.7	289	76	12	710	36	11	10	41	1.75
47806066--47806091	4	6.5	4	100	0	52	0	0	23	76	0.78
47806107--47806152	23	2.0	23	86	0	65	28	10	13	47	1.76
47807518--47807543	8	3.2	8	100	0	52	42	0	0	57	0.98
47809436--47809492	22	2.7	22	83	5	64	61	1	1	35	1.17
47809484--47809512	8	3.6	8	100	0	58	89	0	0	10	0.48
47809473--47809522	15	3.3	15	81	10	57	78	2	0	20	0.86
47809707--47809733	4	6.8	4	100	0	54	77	0	0	22	0.76
47810665--47810757	46	2.0	45	81	6	107	43	17	13	25	1.86
47829360--47829413	12	4.6	12	74	4	56	12	12	22	51	1.74
47829354--47829401	24	2.0	24	95	0	87	14	12	22	50	1.77
47830799--47830829	16	2.0	16	93	6	55	64	12	9	12	1.50
47837491--47837555	31	2.0	33	82	11	82	44	3	3	49	1.33
47838501--47838569	21	3.3	21	76	9	61	47	2	2	46	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47840159--47840259	53	1.9	53	85	4	141	28	30	13	26	1.94
47844161--47844775	306	2.0	306	94	0	1077	32	18	20	29	1.96
47850149--47850196	18	2.7	17	81	15	53	43	0	14	41	1.45
47850514--47850580	25	2.7	25	84	9	75	38	10	13	37	1.79
47852719--47852800	27	2.8	29	78	10	87	34	29	23	13	1.93
47852662--47853084	103	4.1	103	98	0	801	33	28	19	18	1.95
47852822--47852903	27	2.8	29	78	10	87	34	30	21	13	1.92
47852925--47853006	27	2.8	29	78	10	87	34	30	21	13	1.92
47861548--47861755	43	4.8	43	84	4	231	30	23	17	28	1.97
47861548--47861729	87	2.1	86	86	2	256	29	23	19	27	1.98
47861591--47861756	87	1.9	87	85	4	228	31	24	16	27	1.96
47867828--47868045	50	4.4	50	87	1	276	27	23	29	19	1.98
47867829--47868021	100	1.9	100	90	0	305	27	22	29	20	1.98
47870366--47870607	9	27.7	9	76	8	198	32	0	19	47	1.49
47870352--47870406	26	2.1	25	86	10	74	40	0	14	45	1.45
47870397--47870504	34	3.4	33	74	18	129	34	0	18	47	1.49
47870370--47870574	52	3.8	52	87	7	241	32	0	18	48	1.48
47870371--47870583	61	3.7	60	84	12	300	32	0	18	48	1.49
47872927--47873007	14	5.7	14	70	1	54	48	27	2	22	1.63
47878263--47878385	62	2.0	61	98	0	228	23	22	14	38	1.91
47878668--47878693	9	2.9	9	100	0	52	7	23	0	69	1.14
47881988--47882048	24	2.7	22	75	20	54	57	3	3	36	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47882975--47883010	18	1.9	18	88	5	54	66	0	2	30	1.06
47889713--47889750	18	2.1	19	90	5	60	21	21	5	52	1.66
47898776--47898851	39	1.9	39	84	12	102	39	7	9	43	1.66
47898776--47898851	20	3.8	20	86	10	104	39	7	9	43	1.66
47901481--47901700	115	1.9	115	97	0	413	40	20	14	24	1.90
47902359--47902408	20	2.5	20	87	6	75	14	4	6	76	1.13
47902826--47902866	21	2.0	21	90	0	64	39	39	0	21	1.54
47903056--47903081	11	2.4	11	100	0	52	61	0	0	38	0.96
47903299--47903325	14	1.9	14	100	0	54	44	29	0	25	1.54
47903343--47903376	14	2.4	14	90	0	50	44	29	0	26	1.55
47903427--47903451	13	1.9	13	100	0	50	24	8	28	40	1.83
47910785--47910832	23	2.1	23	92	0	78	31	10	41	16	1.82
47914029--47914378	105	3.3	105	99	0	691	29	15	13	41	1.85
47915058--47915118	18	3.4	18	76	0	59	27	19	22	29	1.98
47918658--47918704	23	2.0	23	83	0	58	57	8	8	25	1.57
47921490--47921523	16	2.1	16	88	0	50	64	0	0	35	0.94
47926178--47926264	21	4.2	20	74	10	68	26	1	3	68	1.12
47926179--47926276	10	9.8	10	69	11	51	28	2	3	66	1.18
47926473--47926525	19	3.0	17	73	10	52	35	7	18	37	1.80
47926497--47926555	22	2.7	23	84	7	70	35	3	16	44	1.65
47937299--47938348	44	24.0	44	69	13	415	30	20	22	26	1.98
47937349--47937911	214	2.6	216	89	4	875	30	19	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47937306--47938215	87	10.4	86	70	13	366	30	20	22	26	1.98
47937302--47938310	399	2.6	393	89	2	1494	30	20	22	26	1.98
47937909--47938338	87	5.0	87	73	11	280	30	20	22	26	1.99
47939758--47939803	3	15.3	3	95	0	83	30	0	2	67	1.03
47941241--47941327	21	4.2	20	74	10	68	26	1	3	68	1.12
47941242--47941339	10	9.8	10	69	11	51	28	2	3	66	1.18
47941536--47941588	19	3.0	17	73	10	52	35	7	18	37	1.80
47941560--47941618	22	2.7	23	84	7	70	35	3	16	44	1.65
47952226--47952288	27	2.3	27	86	8	83	44	9	6	39	1.62
47952241--47952294	27	2.0	27	100	0	108	37	11	7	44	1.68
47952717--47952771	25	2.2	26	83	3	67	12	7	1	78	1.04
47954432--47954542	41	2.6	42	78	12	120	28	26	18	26	1.98
47954515--47954673	43	3.7	43	88	0	228	25	27	14	33	1.94
47959454--47959498	20	2.3	19	85	7	63	75	2	0	22	0.91
47961906--47962117	45	4.7	44	80	4	237	29	16	18	34	1.93
47961905--47962117	90	2.4	89	84	4	284	29	16	18	34	1.94
47969166--47969208	21	2.0	21	100	0	86	41	30	9	18	1.82
47970262--47970297	18	2.0	18	89	10	56	25	0	5	69	1.10
47971240--47971309	7	9.9	7	87	3	95	1	0	55	42	1.08
47971239--47971320	14	5.9	14	81	8	51	2	0	51	46	1.14
47973493--47973531	10	3.9	10	89	0	60	41	0	0	58	0.98
47973572--47973607	16	2.2	16	95	0	63	27	11	8	52	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47973667--47973886	67	3.3	67	96	0	395	38	5	12	44	1.64
47974685--47974734	21	2.4	21	86	0	73	38	18	42	2	1.61
47978296--47978347	20	2.6	21	77	20	65	65	1	1	30	1.14
47978294--47978350	19	2.8	21	79	10	66	63	1	1	33	1.15
47978296--47978357	19	3.1	19	73	15	54	61	1	3	33	1.22
47985551--47985617	34	2.0	34	87	0	98	20	20	7	50	1.72
47989825--47989877	24	2.2	24	82	0	61	24	5	60	9	1.49
47991586--47991658	29	2.5	29	75	4	76	32	5	1	60	1.28
47993267--47993305	16	2.4	16	88	12	62	30	0	0	69	0.89
47993269--47993305	17	2.2	16	95	4	65	29	0	0	70	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203