genome.fa.s17.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  164  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51805975--51806015	17	2.3	18	80	16	50	29	0	12	58	1.34
51805986--51806019	17	1.9	18	88	5	52	26	0	17	55	1.42
51806835--51806872	16	2.4	16	86	4	51	78	0	7	13	0.94
51815962--51816052	30	3.0	30	86	1	119	27	23	6	42	1.78
51815977--51816057	15	5.3	16	68	11	53	28	20	6	44	1.76
51820631--51820721	30	3.0	31	90	4	132	27	19	6	46	1.75
51820634--51820717	15	5.5	15	68	12	55	28	17	7	46	1.75
51822874--51822920	24	2.0	24	83	8	60	40	4	0	55	1.19
51823857--51823925	22	3.1	23	85	4	90	17	21	17	43	1.88
51830696--51830727	4	8.0	4	92	0	55	46	25	28	0	1.53
51833577--51833638	32	1.9	32	96	0	115	33	9	11	45	1.73
51834725--51834760	18	2.0	18	94	0	63	47	11	19	22	1.80
51840608--51840671	29	2.3	29	86	10	89	29	3	15	51	1.59
51846265--51846395	41	3.2	41	84	0	172	51	6	19	22	1.70
51847603--51847639	18	2.0	19	94	5	67	24	21	5	48	1.71
51847605--51847644	18	2.2	18	86	8	55	25	20	2	52	1.59
51865884--51865947	13	4.9	13	94	0	110	23	12	25	39	1.90
51869250--51869386	68	2.0	68	97	0	256	29	16	24	30	1.96
51869702--51869830	41	3.1	41	80	6	154	51	6	20	20	1.68
51874142--51874278	68	2.0	68	97	0	256	29	16	24	30	1.96
51874594--51874722	41	3.1	41	80	6	154	51	6	20	20	1.68
51881935--51882108	27	6.4	27	84	4	197	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51881935--51882087	82	1.9	81	87	4	227	26	15	28	30	1.96
51881935--51882108	82	2.1	81	84	3	215	26	14	28	30	1.95
51885970--51886048	5	16.4	5	72	12	67	73	2	21	2	1.07
51885975--51886046	23	3.1	23	80	6	65	72	2	22	2	1.11
51886016--51886062	19	2.5	20	79	10	62	74	0	17	8	1.05
51888311--51888380	28	2.4	29	80	15	83	50	15	0	34	1.45
51888309--51888380	30	2.5	29	86	6	94	50	15	0	34	1.44
51888277--51888388	34	3.4	32	79	12	95	49	16	0	33	1.52
51890413--51890483	19	3.6	19	88	7	115	36	9	15	38	1.81
51890422--51890506	19	4.0	22	77	14	81	37	7	16	38	1.76
51890841--51890876	3	12.0	3	93	0	63	33	2	0	63	1.08
51890874--51890933	28	2.1	29	81	3	68	38	10	3	48	1.53
51891002--51891045	17	2.6	17	85	3	63	40	11	0	47	1.39
51891206--51891263	31	1.9	31	85	3	82	34	3	1	60	1.24
51891225--51891283	28	2.1	27	81	3	64	32	3	5	59	1.36
51897096--51897574	88	5.4	88	89	0	715	29	28	22	19	1.98
51897145--51897371	44	5.2	44	64	9	122	28	26	23	21	1.99
51897585--51897750	44	3.8	44	81	4	210	27	16	27	28	1.97
51897585--51897761	88	2.0	88	86	2	248	27	16	27	28	1.97
51898001--51898180	100	1.8	100	82	2	236	27	21	23	28	1.99
51899392--51899435	17	2.6	17	85	3	63	40	11	0	47	1.39
51899599--51899655	30	1.9	30	89	7	89	35	3	3	57	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51900541--51900585	23	2.0	23	86	4	65	37	6	17	37	1.76
51901066--51901109	17	2.6	17	85	3	63	40	11	0	47	1.39
51901273--51901329	30	1.9	30	89	7	89	35	3	3	57	1.33
51910337--51910389	20	2.5	22	75	6	56	30	22	22	24	1.99
51914361--51914463	28	3.5	28	72	10	89	44	16	6	32	1.74
51914454--51914523	34	2.1	33	81	5	79	48	17	1	32	1.56
51918630--51918679	22	2.2	22	82	3	55	50	14	16	20	1.78
51918720--51918773	28	1.9	28	88	0	81	55	5	29	9	1.54
51922075--51922125	3	17.0	3	100	0	102	66	0	33	0	0.92
51923270--51923309	19	2.0	21	85	9	57	45	20	0	35	1.51
51931951--51932072	60	2.0	60	95	0	217	45	16	9	27	1.79
51945849--51945890	21	2.0	22	85	4	59	26	9	19	45	1.80
51949984--51950061	39	2.0	39	84	0	102	29	3	20	46	1.68
51955562--51955602	6	6.8	6	91	8	66	68	29	2	0	1.03
51955562--51955595	17	2.0	17	100	0	68	70	29	0	0	0.87
51968978--51969058	30	2.7	30	88	0	117	27	12	17	43	1.84
51978345--51978573	81	2.8	82	91	1	388	22	28	20	28	1.98
51978350--51978573	122	1.8	122	94	0	394	22	28	20	28	1.99
51978346--51978573	41	5.6	41	90	1	368	22	28	20	28	1.98
51981001--51981409	203	2.0	204	94	1	714	34	22	9	32	1.87
51982535--51982600	29	2.2	30	86	2	89	46	12	12	28	1.77
51982533--51982603	30	2.4	30	83	4	90	46	11	12	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51982550--51982606	29	2.0	29	86	3	80	43	15	12	28	1.83
51986573--51986600	7	4.0	7	100	0	56	42	0	0	57	0.99
51987316--51987360	16	2.6	17	82	6	56	28	28	0	42	1.56
51994966--51995008	17	2.5	17	88	0	59	34	16	18	30	1.93
51996932--51996969	14	2.8	13	92	7	67	47	5	10	36	1.61
51997222--51997366	34	4.3	34	88	0	200	22	23	13	40	1.89
52000153--52000191	19	2.0	20	90	10	62	12	7	10	69	1.37
52000228--52000270	21	2.0	23	81	9	54	34	11	9	44	1.73
52002137--52002166	13	2.3	13	100	0	60	40	6	13	40	1.71
52018170--52018207	7	5.6	7	90	3	51	15	0	0	84	0.63
52021166--52021214	24	2.0	24	100	0	98	36	14	8	40	1.75
52033507--52033543	3	12.3	3	94	0	65	35	0	32	32	1.58
52033836--52033876	2	20.5	2	100	0	82	0	0	48	51	1.00
52044824--52045032	111	1.9	113	93	3	368	26	0	13	59	1.39
52048651--52048815	48	3.5	48	73	11	142	35	9	9	45	1.69
52049182--52049221	6	6.7	6	82	0	53	5	35	27	32	1.79
52051265--52051744	103	4.6	103	82	6	499	56	14	0	27	1.44
52051489--52051640	50	3.0	48	67	17	130	59	15	0	24	1.40
52051874--52051951	4	18.2	4	87	10	102	0	26	0	73	0.84
52055523--52055599	14	5.0	15	71	20	52	42	15	9	32	1.78
52055539--52055578	20	2.0	20	90	0	62	50	12	10	27	1.72
52055527--52055593	34	1.9	35	90	3	109	46	13	8	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52055562--52055601	14	2.9	14	84	0	53	42	17	7	32	1.77
52055799--52055835	9	4.1	9	92	0	65	45	13	10	29	1.77
52072837--52072996	43	3.8	42	75	9	135	30	15	24	30	1.95
52074489--52074601	42	2.7	43	75	15	119	24	18	25	30	1.98
52081394--52081434	22	1.9	22	85	5	57	29	24	24	21	1.99
52093138--52093171	6	5.7	6	92	0	50	35	0	41	23	1.55
52093138--52093171	12	2.8	12	90	0	59	35	0	41	23	1.55
52100756--52100803	23	2.1	23	84	7	62	33	0	2	64	1.05
52106957--52107005	11	4.5	11	85	7	64	22	28	0	48	1.50
52106957--52107005	23	2.2	22	82	10	64	22	28	0	48	1.50
52112270--52112684	125	3.3	125	96	0	722	25	22	19	32	1.98
52112717--52112995	96	2.9	94	80	5	319	40	18	3	37	1.68
52113687--52113711	2	12.5	2	100	0	50	52	0	0	48	1.00
52116739--52116773	18	1.9	18	88	0	52	77	0	2	20	0.90
52117794--52117825	7	4.6	7	100	0	64	59	12	28	0	1.34
52120246--52120278	8	4.2	8	96	3	59	75	0	0	24	0.80
52124092--52124146	3	18.3	3	85	7	76	32	1	3	61	1.24
52127177--52127238	32	1.9	32	96	0	115	29	9	22	38	1.86
52128113--52128138	8	3.2	8	100	0	52	11	11	11	65	1.48
52137784--52137827	24	1.9	24	81	9	56	43	2	0	54	1.12
52137957--52138169	67	3.2	66	64	19	159	46	3	3	46	1.37
52137913--52138178	137	1.9	138	91	0	435	47	4	3	44	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52138061--52138095	18	2.0	17	88	5	52	45	0	0	54	0.99
52137947--52138161	70	3.1	69	66	18	176	46	3	4	46	1.38
52137947--52138520	156	3.9	146	90	5	695	46	5	3	44	1.44
52138037--52138520	156	3.1	156	98	0	932	46	6	3	43	1.46
52138217--52138265	15	2.9	18	80	20	61	44	0	0	55	0.99
52138217--52138271	15	3.4	16	80	16	53	43	0	1	54	1.10
52138373--52138421	15	2.9	18	80	20	61	44	0	0	55	0.99
52138373--52138427	15	3.4	16	80	16	53	43	0	1	54	1.10
52138572--52138662	45	2.0	45	85	2	121	37	28	6	27	1.82
52138643--52138678	16	2.2	16	100	0	72	38	36	0	25	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203