genome.fa.s17.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  185  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58822326--58822950	131	4.8	131	89	2	943	24	23	21	30	1.99
58822327--58823074	393	1.9	393	83	5	958	24	24	21	29	1.99
58825234--58825268	12	2.8	12	91	4	52	2	14	0	82	0.77
58825298--58825375	18	4.8	16	71	20	54	10	5	7	76	1.13
58825319--58825375	26	2.2	27	84	12	75	12	5	7	75	1.17
58825343--58825383	12	3.2	12	83	12	55	17	2	9	70	1.25
58825330--58825379	14	3.7	14	79	15	61	14	4	6	76	1.13
58825330--58825383	26	2.1	26	89	6	83	14	3	7	74	1.18
58830133--58830170	17	2.2	17	86	9	51	50	0	7	42	1.31
58832826--58832854	15	1.9	15	100	0	58	31	13	27	27	1.94
58840537--58840570	16	2.1	16	88	0	50	41	2	20	35	1.68
58845370--58845437	16	4.2	16	94	0	118	26	0	33	39	1.57
58845772--58845823	15	3.6	15	80	12	56	53	1	0	44	1.11
58845656--58845952	59	5.0	58	66	18	164	50	4	3	41	1.38
58845656--58845948	120	2.4	121	93	1	491	50	4	3	41	1.39
58848743--58848772	15	2.0	15	100	0	60	46	20	26	6	1.75
58852314--58852406	12	7.8	12	68	4	62	35	5	41	17	1.72
58852318--58852405	24	3.7	24	85	0	113	35	5	42	17	1.73
58860412--58860456	22	2.0	22	83	8	56	33	6	4	55	1.46
58861749--58861785	9	4.2	9	93	6	67	54	0	0	45	1.00
58861749--58861783	17	2.1	17	100	0	70	54	0	0	45	0.99
58865124--58865350	76	3.0	76	82	3	287	37	28	18	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58865124--58865350	38	6.0	38	83	2	240	37	28	18	15	1.91
58868564--58868633	27	2.6	27	76	13	81	38	17	21	22	1.93
58878348--58878421	38	2.0	37	86	2	103	14	22	29	32	1.94
58880091--58880131	21	2.0	21	90	0	64	41	17	7	34	1.77
58881596--58881639	21	2.1	21	95	0	79	36	4	20	38	1.73
58885845--58885882	20	1.9	20	89	10	60	55	5	21	18	1.62
58887297--58887343	15	3.1	15	93	3	76	27	27	6	38	1.81
58896002--58896221	46	4.8	46	82	2	264	26	21	21	30	1.99
58898924--58898996	36	2.0	36	83	0	92	10	13	23	52	1.72
58900051--58900088	18	2.1	18	100	0	76	39	0	5	55	1.23
58900233--58900285	13	4.1	13	80	0	70	32	7	24	35	1.84
58901416--58901481	33	2.0	33	87	0	96	12	43	3	40	1.57
58904592--58904660	35	1.9	36	94	2	122	26	4	17	52	1.63
58905982--58906048	34	1.9	35	87	3	100	49	11	5	32	1.64
58911394--58911424	15	2.1	15	93	0	53	45	3	6	45	1.45
58912276--58912360	45	1.9	44	83	7	109	36	12	21	29	1.91
58919289--58919317	8	3.6	8	100	0	58	65	10	0	24	1.23
58920894--58920953	25	2.3	26	91	2	95	50	13	8	28	1.70
58922208--58922322	37	3.1	37	88	2	169	22	14	26	35	1.93
58926656--58926689	17	2.0	17	88	0	50	41	0	52	5	1.25
58929159--58929264	55	1.9	56	82	1	133	24	30	21	23	1.99
58933543--58933615	35	2.1	35	92	5	121	32	21	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58939719--58939859	23	6.2	23	84	1	185	29	23	21	24	1.99
58939723--58939858	46	3.0	46	91	1	220	30	24	22	23	1.99
58940308--58940369	30	2.1	30	84	0	79	32	22	4	40	1.75
58948675--58948703	14	2.0	15	93	6	51	27	13	0	58	1.36
58959663--58959713	19	2.7	19	81	0	57	29	25	0	45	1.54
58961551--58961584	16	2.2	15	94	5	59	50	23	2	23	1.63
58965084--58965131	18	2.7	18	93	0	78	37	12	10	39	1.77
58970640--58970833	50	3.9	48	75	4	154	29	20	26	23	1.99
58972037--58972099	11	5.7	11	72	12	58	53	0	4	41	1.22
58972041--58972108	32	2.1	32	97	0	127	60	0	4	35	1.17
58972070--58972149	42	1.9	42	97	0	151	65	0	3	31	1.11
58974044--58974104	24	2.5	25	86	7	90	8	22	4	63	1.41
58974308--58974386	30	2.7	29	78	3	86	41	5	17	35	1.72
58974316--58974455	30	4.7	30	83	2	140	43	4	20	32	1.71
58974308--58974432	60	2.1	59	84	1	160	41	3	18	36	1.67
58974697--58974723	8	3.4	8	100	0	54	48	0	0	51	1.00
58974965--58975008	19	2.3	19	80	7	54	47	2	0	50	1.13
58975235--58975272	13	2.9	13	96	0	67	39	26	7	26	1.83
58984703--58984740	3	12.7	3	100	0	76	65	0	0	34	0.93
58984891--58984987	34	2.8	34	78	12	90	15	17	29	37	1.91
58984938--58985022	18	4.7	18	73	13	59	15	21	29	34	1.94
58984891--58985022	17	7.5	17	71	6	77	15	19	30	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58985037--58985093	17	3.4	17	77	0	60	21	21	28	29	1.98
58986788--58986842	19	3.0	17	81	10	56	41	0	14	43	1.45
58992821--58992923	17	5.9	17	68	7	55	15	17	29	37	1.91
58993576--58993615	21	1.9	21	84	0	53	37	5	7	50	1.53
58999911--59000253	51	6.8	51	77	5	288	29	14	25	30	1.95
58999912--59000247	102	3.3	100	85	4	381	29	14	25	30	1.95
59001496--59001534	20	2.0	19	90	5	60	15	35	0	48	1.45
59002742--59002810	20	3.2	20	77	18	84	43	14	5	36	1.70
59002721--59002810	45	2.0	45	97	0	171	43	16	6	33	1.74
59002721--59002795	25	3.2	25	76	18	97	44	17	8	30	1.77
59003160--59003268	41	2.7	41	88	0	146	29	23	20	26	1.99
59009018--59009149	67	2.0	65	91	2	210	30	6	17	45	1.74
59012752--59012783	17	1.9	17	93	6	57	37	21	6	34	1.79
59017769--59017819	10	5.4	10	77	13	54	66	0	1	31	1.03
59017767--59017819	19	2.9	18	80	5	70	66	0	1	32	1.03
59019806--59019847	19	2.2	20	91	4	68	7	26	28	38	1.82
59033971--59034035	20	3.3	19	77	14	69	16	23	20	40	1.92
59033968--59034054	39	2.2	39	85	4	113	14	25	21	37	1.92
59033967--59034027	19	3.2	19	77	13	70	16	21	21	40	1.91
59034031--59034094	20	3.3	18	76	10	56	10	31	21	35	1.88
59034029--59034104	39	1.9	40	84	7	102	11	30	22	35	1.90
59034038--59034096	20	3.0	21	74	16	63	11	28	22	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59044512--59044589	26	2.9	27	83	14	108	28	20	6	44	1.76
59044512--59044589	28	2.9	26	82	14	104	28	20	6	44	1.76
59049882--59049917	3	12.0	3	93	0	63	66	2	0	30	1.06
59051651--59051687	20	1.9	18	89	10	56	48	8	5	37	1.56
59054772--59054807	3	12.0	3	87	0	54	63	2	2	30	1.22
59056575--59056611	20	1.9	18	89	10	56	48	8	5	37	1.56
59066980--59067047	34	2.0	34	97	0	127	35	10	14	39	1.80
59070072--59070129	26	2.2	26	90	0	89	17	22	22	37	1.93
59077665--59077695	16	1.9	16	93	0	53	9	6	6	77	1.12
59079112--59079160	20	2.7	17	75	12	53	44	4	0	51	1.20
59085846--59086072	48	4.7	48	83	5	285	45	15	13	25	1.82
59085853--59086045	99	1.9	99	89	2	298	45	15	12	26	1.82
59085952--59086031	23	3.4	23	70	13	72	40	16	15	28	1.88
59085973--59086051	25	3.2	25	71	7	81	43	15	15	26	1.86
59086627--59086738	42	2.6	43	77	1	127	33	18	16	32	1.93
59089154--59089192	20	2.0	20	90	10	62	56	5	23	15	1.59
59096098--59096379	48	5.8	48	83	1	312	43	17	14	25	1.86
59096202--59096283	23	3.5	23	69	12	67	40	15	14	29	1.87
59096082--59096378	96	3.1	97	85	3	375	43	16	14	25	1.86
59096920--59097034	42	2.7	41	77	5	122	30	24	16	28	1.96
59110991--59111174	40	4.7	40	81	11	195	25	27	21	25	2.00
59110991--59111174	79	2.3	81	81	11	213	25	27	21	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59119358--59119542	79	2.3	82	84	7	238	25	27	22	24	2.00
59119339--59119542	40	5.1	40	82	8	238	25	27	22	25	2.00
59123890--59123936	16	2.9	16	71	22	53	44	8	0	46	1.33
59128696--59128838	73	2.0	73	98	0	277	38	20	11	30	1.87
59129726--59129825	20	5.1	20	66	12	64	32	20	31	17	1.95
59129718--59129814	39	2.5	40	87	3	142	34	18	30	16	1.93
59131440--59131472	16	2.0	17	88	5	50	48	18	6	27	1.71
59132956--59132984	14	2.1	14	100	0	58	34	13	6	44	1.71
59146423--59146490	25	2.7	25	86	0	100	25	26	16	32	1.96
59149100--59150778	839	2.0	839	99	0	3340	35	22	12	29	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203