genome.fa.s17.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  108  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34270250--34270299	17	2.9	17	93	0	91	44	6	26	24	1.76
34274772--34274821	17	2.9	17	93	0	91	44	6	26	24	1.76
34277230--34277288	21	2.7	21	73	16	57	35	8	20	35	1.83
34277450--34277509	21	2.8	21	82	2	75	38	11	16	33	1.85
34283318--34283368	25	2.0	25	96	0	93	33	5	19	41	1.76
34285828--34285871	17	2.8	17	87	12	60	61	0	0	38	0.96
34285829--34285906	15	5.1	15	76	16	61	58	0	2	38	1.12
34288320--34288442	43	2.8	44	80	9	128	25	17	26	30	1.97
34288652--34288734	36	2.3	37	82	2	96	33	2	20	43	1.65
34295948--34295976	11	2.6	11	100	0	58	55	10	6	27	1.59
34298354--34298399	21	2.2	21	96	0	83	34	23	10	30	1.89
34302499--34302645	52	2.8	50	79	8	134	39	4	7	48	1.53
34302505--34303041	149	3.6	149	90	4	784	43	3	9	43	1.54
34303648--34303686	9	4.1	9	84	12	51	20	2	0	76	0.90
34307155--34307233	37	2.2	37	88	2	115	49	15	17	17	1.80
34307155--34307248	37	2.6	37	81	5	102	44	15	18	21	1.86
34307648--34307696	16	2.9	17	79	14	57	51	2	4	42	1.32
34307705--34307742	13	2.7	14	80	12	51	50	2	0	47	1.15
34307739--34307798	14	4.2	14	72	16	52	51	0	0	48	1.00
34307742--34307794	23	2.2	24	80	6	63	49	0	0	50	1.00
34307750--34307807	28	2.1	29	87	6	84	53	1	0	44	1.10
34307839--34307865	13	2.1	13	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34309050--34309226	88	2.0	88	92	2	293	35	20	18	25	1.95
34313820--34313910	38	2.4	38	88	0	137	35	19	10	34	1.87
34321706--34321911	78	2.6	77	81	4	243	35	7	8	47	1.63
34322374--34322536	75	2.1	76	79	4	177	36	12	11	39	1.79
34327338--34327381	4	11.0	4	100	0	88	25	0	25	50	1.50
34337811--34337897	45	1.9	45	86	4	122	49	4	5	40	1.47
34338880--34338941	30	2.1	30	87	0	88	25	3	12	58	1.50
34339507--34339552	19	2.4	19	78	7	58	54	6	0	39	1.26
34342562--34342606	11	4.2	11	88	2	65	24	31	2	42	1.67
34342556--34342616	22	2.7	23	80	12	65	22	31	1	44	1.63
34344497--34344536	18	2.2	18	90	0	62	22	27	10	40	1.86
34345828--34346347	260	2.0	260	100	0	1040	27	22	17	32	1.97
34357869--34357908	18	2.2	18	86	8	55	67	12	0	20	1.22
34357991--34358053	30	2.1	30	90	0	99	57	11	4	26	1.53
34380201--34380361	61	2.6	62	77	6	159	39	16	3	39	1.67
34380791--34380921	62	2.1	63	80	5	151	43	4	10	41	1.60
34382461--34382522	27	2.2	28	82	8	72	51	1	6	40	1.37
34389715--34389850	42	3.2	42	74	0	119	15	21	17	45	1.85
34397524--34397564	21	2.0	21	85	9	57	12	17	21	48	1.79
34397406--34397562	63	2.5	63	78	4	165	15	22	16	45	1.85
34398600--34399133	134	4.0	134	95	0	879	26	28	22	22	1.99
34400968--34401021	24	2.2	25	80	9	58	38	3	3	53	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34401714--34401814	21	4.8	21	70	16	66	46	30	2	19	1.65
34401862--34401900	14	2.9	14	80	3	53	30	10	23	35	1.88
34403432--34403470	13	3.0	13	84	0	51	15	10	12	61	1.56
34408997--34409413	208	2.0	208	97	0	780	27	16	23	32	1.96
34411888--34411941	7	7.7	7	100	0	108	42	0	0	57	0.98
34412026--34412059	5	6.8	5	100	0	68	41	17	0	41	1.50
34412134--34412225	30	3.3	29	75	14	88	35	0	6	57	1.25
34415747--34415803	26	2.1	28	87	9	84	42	35	5	17	1.72
34417158--34417248	24	3.8	23	81	10	94	32	4	7	54	1.49
34423350--34423607	129	2.0	129	91	0	417	31	18	24	25	1.98
34423610--34424253	44	14.8	43	69	13	195	27	18	25	27	1.98
34423610--34424156	44	12.6	45	69	15	201	27	19	26	26	1.99
34423607--34424264	218	3.0	218	90	1	1018	27	18	25	27	1.98
34425166--34425207	20	2.0	21	86	4	59	7	19	4	69	1.31
34426052--34426142	24	3.8	23	81	10	94	32	4	7	54	1.49
34429352--34429418	33	2.0	33	97	0	125	35	8	34	20	1.84
34437388--34437622	116	2.0	116	97	0	443	35	12	25	25	1.92
34441231--34441260	12	2.5	12	94	0	51	26	10	0	63	1.26
34441827--34441939	55	2.1	55	81	3	129	50	4	1	43	1.32
34447001--34447043	13	3.5	13	81	18	65	48	16	0	34	1.46
34447001--34447045	23	2.0	23	100	0	90	48	15	0	35	1.45
34448975--34449010	3	11.7	3	88	5	54	63	0	2	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34449702--34449735	10	3.5	10	92	4	52	85	2	0	11	0.71
34450105--34450159	27	2.0	28	82	10	69	9	3	36	50	1.51
34458973--34459035	31	2.0	31	100	0	126	47	15	3	33	1.62
34463039--34463077	13	2.9	14	80	7	53	15	17	0	66	1.25
34463385--34463502	52	2.3	53	86	5	161	33	2	5	58	1.36
34466457--34466629	24	7.0	24	75	9	134	16	25	21	35	1.95
34466478--34466629	72	2.1	74	88	2	227	17	25	22	34	1.95
34469742--34469789	16	3.0	16	100	0	96	25	12	25	37	1.91
34476865--34476916	20	2.4	22	81	18	65	42	0	5	51	1.25
34492977--34493048	26	2.8	26	85	2	83	30	16	9	43	1.80
34495529--34495619	34	2.6	35	83	15	125	45	13	0	41	1.43
34495552--34495603	15	3.3	15	75	19	61	46	11	0	42	1.40
34495559--34495611	15	3.4	15	78	19	63	45	9	0	45	1.36
34497995--34498148	24	6.2	25	70	10	93	16	24	20	38	1.93
34503309--34503370	23	2.7	23	87	0	79	37	22	20	19	1.95
34504061--34504940	439	2.0	439	100	0	1760	31	16	13	39	1.87
34508430--34508485	12	4.4	12	80	8	58	62	1	1	33	1.16
34510144--34510207	30	2.2	29	83	8	76	14	25	1	59	1.44
34510198--34510238	19	2.1	20	95	4	75	0	24	4	70	1.06
34515221--34515247	3	9.0	3	100	0	54	66	0	0	33	0.92
34517194--34517230	16	2.3	16	90	9	58	54	13	0	32	1.40
34517754--34517959	43	4.7	44	77	9	199	33	24	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34520631--34520690	12	5.3	11	72	20	52	61	3	1	33	1.22
34522506--34522605	41	2.6	39	80	10	116	31	24	18	27	1.97
34526293--34526369	34	2.3	35	84	13	115	48	12	0	38	1.42
34526302--34526353	15	3.3	15	75	19	61	48	11	0	40	1.40
34526309--34526361	15	3.4	15	73	19	54	47	9	0	43	1.36
34527045--34527074	16	1.9	15	93	6	51	0	26	0	73	0.84
34527045--34527082	20	1.9	20	84	10	51	0	26	2	71	1.00
34537395--34537421	13	2.1	13	100	0	54	55	0	7	37	1.28
34539247--34539638	95	4.1	95	85	2	441	29	18	14	37	1.90
34542471--34542526	26	2.2	26	83	6	69	33	25	5	35	1.79
34542483--34542530	13	3.7	13	78	10	62	35	25	6	33	1.81
34549524--34549609	43	2.0	43	90	0	136	23	23	1	52	1.54
34556710--34556738	3	9.7	3	100	0	58	31	0	0	68	0.89
34558867--34558907	21	2.0	21	81	18	50	31	19	26	21	1.97
34568755--34568931	46	3.8	45	84	4	210	38	9	22	29	1.85
34574976--34575008	3	11.0	3	100	0	66	66	0	0	33	0.92
34578956--34579013	29	2.0	29	89	0	89	25	6	13	53	1.65
34589400--34590161	309	2.4	309	90	4	1181	30	11	7	49	1.67
34589400--34590161	158	4.9	153	72	15	654	30	11	7	49	1.67
34590522--34590706	10	18.9	10	66	26	69	0	29	0	69	0.97
34590496--34590580	33	2.5	34	78	16	88	1	30	1	67	1.06
34590563--34590701	14	9.3	14	74	15	91	0	30	0	69	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34590530--34590706	28	5.9	28	72	20	85	0	29	0	69	0.97
34590494--34590715	38	5.8	39	73	17	150	0	31	0	67	0.98
34590757--34590819	27	2.3	27	80	0	72	12	28	39	19	1.88
34591917--34592042	28	4.5	28	88	2	173	30	13	25	30	1.94
34592756--34593131	23	16.3	23	74	13	267	28	15	16	39	1.89
34592735--34593153	93	4.5	93	93	1	648	29	15	16	38	1.90
34593056--34593093	20	1.9	20	94	0	67	26	13	13	47	1.79
34599225--34599322	28	3.5	28	88	0	142	30	12	27	29	1.93
34600018--34600313	93	3.2	93	97	0	558	27	17	17	38	1.91
34600094--34600478	163	2.4	163	93	1	641	26	16	16	39	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203