genome.fa.s17.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  168  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53205444--53205498	13	3.9	14	77	17	60	56	1	0	41	1.10
53208075--53208491	138	3.0	138	92	2	694	45	5	6	41	1.55
53210025--53210084	22	2.7	22	81	0	75	13	10	15	61	1.56
53216525--53216549	13	1.9	13	100	0	50	20	40	8	32	1.81
53216716--53216844	68	1.9	68	91	0	213	18	20	5	55	1.63
53225817--53225853	9	4.1	9	89	0	56	29	8	13	48	1.71
53230037--53230129	48	2.0	47	95	2	168	38	10	32	18	1.85
53238186--53238668	243	2.0	243	92	0	804	24	20	23	31	1.98
53239753--53239788	3	12.0	3	100	0	72	33	33	0	33	1.58
53243207--53243306	31	3.2	30	76	5	94	41	11	12	36	1.78
53243713--53243766	11	4.7	12	80	17	53	70	3	0	25	1.04
53246353--53246411	29	2.0	31	83	12	79	64	0	0	35	0.94
53251800--53251857	29	2.0	29	83	6	73	34	8	3	53	1.49
53253644--53253731	41	2.1	41	85	8	117	42	14	4	38	1.67
53260493--53260520	7	4.0	7	100	0	56	42	0	0	57	0.99
53263898--53263942	22	2.0	22	100	0	90	28	17	0	53	1.44
53266587--53266631	17	2.6	17	96	0	81	33	22	11	33	1.89
53267718--53267889	60	2.9	59	83	3	202	37	15	23	23	1.93
53272347--53272391	23	2.0	23	95	0	81	37	17	13	31	1.89
53277606--53277694	42	2.1	42	87	4	126	13	29	28	29	1.94
53278505--53278699	50	3.9	50	78	8	193	28	21	27	22	1.99
53286587--53286638	26	2.0	26	100	0	104	23	15	30	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53292303--53292357	14	3.7	14	80	7	56	20	1	1	76	0.97
53295375--53295417	6	7.2	6	79	10	52	30	6	0	62	1.21
53296843--53296882	19	2.1	19	90	9	64	30	10	10	50	1.69
53302483--53302532	26	2.0	26	84	7	68	50	12	16	22	1.77
53303729--53303762	14	2.4	14	95	0	59	17	41	29	11	1.85
53303996--53304088	22	4.2	21	84	11	116	20	30	1	48	1.57
53303996--53304088	11	8.5	10	88	8	105	20	30	1	48	1.57
53303996--53304088	44	2.1	44	86	11	129	20	30	1	48	1.57
53308445--53308499	21	2.6	21	82	0	56	32	45	14	7	1.72
53308614--53308712	34	3.0	33	74	14	98	41	9	6	43	1.61
53311713--53312129	126	3.3	126	92	0	690	25	22	18	32	1.97
53312168--53312443	96	2.9	96	81	4	326	40	15	2	40	1.63
53313577--53313608	5	6.4	5	100	0	64	62	18	0	18	1.33
53314647--53314675	6	4.8	6	100	0	58	17	0	0	82	0.66
53325576--53325636	18	3.4	17	80	11	59	8	19	3	68	1.29
53326577--53326619	15	2.9	15	100	0	86	20	11	4	62	1.46
53326657--53326704	12	4.2	11	89	10	78	22	0	8	68	1.16
53326657--53326704	23	2.1	23	96	0	87	22	0	8	68	1.16
53331170--53331301	43	3.1	43	83	1	167	28	14	25	31	1.95
53332201--53332537	169	2.0	169	96	0	620	29	19	15	35	1.93
53332926--53333005	35	2.3	35	84	4	99	22	20	17	40	1.92
53332940--53333028	35	2.5	35	76	8	90	25	21	11	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53335649--53335731	20	4.3	20	73	22	70	31	3	1	63	1.19
53338578--53338724	75	2.0	75	82	2	179	46	12	13	27	1.79
53339656--53339709	25	2.2	24	83	3	63	64	3	1	29	1.21
53340916--53341569	116	5.6	117	72	11	411	16	17	16	48	1.81
53348310--53348379	31	2.3	31	85	2	88	21	14	18	45	1.84
53349522--53349546	8	3.1	8	100	0	50	12	0	0	88	0.53
53349540--53349568	11	2.6	11	100	0	58	37	0	0	62	0.96
53349551--53349588	18	2.1	18	90	5	58	36	0	0	63	0.95
53351713--53351897	101	1.8	102	85	3	266	22	16	28	31	1.96
53351767--53351897	51	2.6	50	82	4	165	22	18	28	31	1.97
53351819--53351899	26	3.2	25	65	28	62	22	16	29	32	1.95
53352123--53352154	16	2.0	16	93	0	55	59	0	15	25	1.36
53354349--53354402	19	2.6	21	77	17	58	31	0	12	55	1.38
53358013--53358139	50	2.6	49	75	10	125	39	12	11	36	1.80
53375958--53376097	53	2.6	53	88	0	217	27	25	12	35	1.91
53377847--53378045	41	4.9	40	81	6	159	35	28	18	18	1.94
53377847--53378045	81	2.4	82	84	2	240	35	28	18	18	1.94
53378015--53378061	16	3.0	16	93	3	78	36	31	17	14	1.90
53377983--53378090	57	1.9	57	98	0	207	39	29	14	15	1.88
53378035--53378121	41	2.1	41	89	0	129	41	29	12	16	1.85
53377937--53378121	98	1.9	97	86	3	264	38	29	15	16	1.89
53378573--53378695	41	3.0	40	80	2	138	34	27	19	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53378637--53378869	41	5.7	41	82	7	240	37	27	17	17	1.92
53378574--53378869	82	3.6	82	81	7	219	37	28	17	17	1.92
53381344--53381390	22	2.0	25	84	12	64	31	27	2	38	1.69
53388185--53388230	5	9.2	5	100	0	92	60	0	0	39	0.97
53392651--53392898	119	2.1	119	90	1	381	22	21	31	24	1.98
53402736--53402781	21	2.2	21	88	0	65	4	26	2	67	1.21
53425381--53425411	14	2.3	13	94	5	53	90	3	6	0	0.55
53432176--53432237	18	3.3	19	74	12	56	30	1	1	66	1.11
53432170--53432209	18	2.2	18	86	4	53	32	0	0	67	0.91
53432243--53432286	21	2.0	21	82	4	52	29	4	2	63	1.26
53442362--53442718	40	8.9	40	86	3	477	43	26	15	14	1.86
53443279--53443323	20	2.2	20	88	0	63	28	15	11	44	1.81
53452147--53452222	20	3.8	20	73	0	71	35	19	34	10	1.86
53452144--53452235	40	2.3	41	79	9	109	33	19	34	11	1.89
53458375--53458571	101	2.0	101	93	0	340	29	11	25	33	1.91
53460301--53460342	21	2.0	20	82	13	50	47	11	7	33	1.68
53468548--53468600	27	2.0	27	92	0	88	18	24	22	33	1.97
53469106--53469166	31	2.0	31	96	0	113	40	24	14	19	1.89
53469697--53469731	17	2.1	17	100	0	70	37	5	28	28	1.80
53474438--53474555	43	2.7	42	89	5	182	10	16	10	63	1.51
53475085--53475180	31	3.1	31	95	3	174	45	13	9	31	1.75
53484904--53484988	43	2.0	43	97	0	161	36	11	22	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53487069--53487118	26	1.9	26	95	0	91	40	12	6	42	1.67
53491231--53491280	26	1.9	26	95	0	91	38	12	8	42	1.71
53495462--53495511	26	1.9	26	95	0	91	38	12	8	42	1.71
53497581--53497630	26	1.9	26	95	0	91	38	12	8	42	1.71
53499700--53499749	26	1.9	26	95	0	91	38	12	8	42	1.71
53501819--53501868	26	1.9	26	95	0	91	38	12	8	42	1.71
53504302--53504351	26	1.9	26	95	0	91	36	14	6	44	1.69
53506422--53506473	26	2.0	26	88	0	77	34	9	7	48	1.65
53509681--53509728	5	9.0	5	78	13	51	72	0	6	20	1.05
53511035--53511108	22	3.3	22	64	17	62	28	31	10	29	1.91
53511025--53511130	45	2.4	45	98	0	203	30	31	7	31	1.85
53511361--53511504	72	2.0	72	98	0	279	36	8	13	42	1.74
53513962--53514138	27	6.5	27	80	3	167	25	16	29	28	1.97
53513962--53514117	82	1.9	81	84	3	206	25	16	29	28	1.97
53513958--53514138	82	2.2	81	80	2	202	25	16	28	28	1.97
53514538--53514735	98	2.0	98	99	0	387	21	19	19	39	1.93
53521374--53521411	14	2.6	15	83	4	51	39	7	2	50	1.46
53523576--53523620	3	15.0	3	95	0	81	35	0	64	0	0.94
53524149--53524198	26	1.9	26	84	8	66	54	0	0	46	1.00
53527303--53527425	46	2.6	47	80	6	133	32	16	22	28	1.96
53529244--53529292	10	4.8	10	80	14	55	40	18	28	12	1.86
53531562--53531865	152	2.0	152	98	0	590	28	11	24	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53534239--53534665	47	9.1	47	94	0	701	32	8	30	28	1.88
53534784--53534862	37	2.1	37	88	4	115	25	18	30	25	1.98
53537392--53537467	38	2.0	38	97	0	143	35	15	19	28	1.93
53538752--53538791	12	3.3	12	78	0	53	10	15	2	72	1.21
53542418--53542448	16	1.9	16	93	0	53	64	0	9	25	1.24
53543395--53543491	6	16.2	6	73	0	86	71	2	20	6	1.18
53543397--53543566	18	9.6	18	72	11	118	67	1	20	10	1.30
53547397--53547458	10	5.9	10	74	10	52	33	32	3	30	1.74
53547397--53547459	21	3.0	21	88	2	90	33	33	3	30	1.74
53548620--53548655	11	3.3	11	88	11	56	75	8	2	13	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203