genome.fa.s17.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  131  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41520329--41520394	33	2.0	32	85	2	87	30	6	27	36	1.81
41525042--41525101	25	2.3	25	83	16	70	43	3	1	51	1.28
41527671--41527730	27	2.2	27	78	3	66	63	1	1	33	1.14
41539867--41539919	24	2.2	25	80	16	58	39	1	13	45	1.54
41541947--41542013	27	2.4	28	80	7	66	34	1	1	62	1.13
41543673--41543713	17	2.3	19	80	16	52	63	12	0	24	1.28
41543672--41543711	18	2.2	18	86	8	55	65	12	0	22	1.26
41546148--41546238	40	2.3	38	87	7	137	35	10	16	37	1.84
41546148--41546241	19	4.8	19	90	5	143	35	10	18	36	1.85
41553203--41553930	88	8.3	88	90	0	1089	25	23	26	24	2.00
41553908--41554088	42	4.1	42	79	9	166	30	15	25	28	1.96
41554433--41554488	21	2.8	19	84	10	85	35	10	17	35	1.85
41556700--41556752	19	2.8	18	78	13	54	62	1	5	30	1.29
41565654--41565689	18	2.0	18	100	0	72	22	27	16	33	1.95
41568126--41568195	6	10.5	6	73	19	50	77	5	1	15	1.03
41577042--41577444	47	8.6	47	95	0	707	29	29	8	33	1.87
41582602--41582669	28	2.4	28	90	0	100	10	16	4	69	1.33
41592056--41592090	17	2.1	17	89	5	54	54	0	5	40	1.24
41594967--41595002	17	2.1	17	100	0	72	36	22	11	30	1.89
41601743--41601780	19	2.0	20	89	5	60	44	2	21	31	1.66
41602702--41602770	16	4.2	16	96	3	129	24	0	37	37	1.56
41602702--41602770	33	2.1	32	97	2	129	24	0	37	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41602751--41602841	45	2.0	45	85	2	121	27	6	28	37	1.82
41603006--41603042	19	2.0	19	85	15	51	54	0	0	45	1.00
41603084--41603269	59	3.1	58	69	19	157	51	3	2	42	1.34
41602986--41603275	120	2.4	120	89	3	456	49	4	2	43	1.35
41615730--41615758	14	2.0	15	93	6	51	62	6	17	13	1.52
41646550--41646675	38	3.3	38	82	7	148	33	19	15	32	1.92
41646519--41646675	76	2.1	76	83	8	194	33	18	15	32	1.92
41648235--41648495	45	5.8	45	85	0	351	24	21	17	36	1.95
41648232--41648626	135	2.7	141	81	8	417	26	21	16	35	1.94
41648498--41648640	50	3.0	49	79	14	179	28	19	14	37	1.91
41648394--41648603	110	2.0	105	85	6	287	25	21	16	36	1.94
41648348--41648626	155	1.8	150	88	3	423	26	21	16	35	1.95
41648498--41648646	45	3.2	45	83	8	174	28	19	14	37	1.91
41648303--41648691	200	2.0	195	81	4	449	26	20	15	37	1.93
41649273--41649309	16	2.2	17	81	18	51	29	18	2	48	1.62
41651854--41652030	27	6.6	27	81	8	184	46	18	16	18	1.85
41651850--41652049	80	2.5	80	81	9	223	45	17	18	19	1.86
41651863--41652030	53	3.2	53	83	4	221	45	18	17	18	1.85
41651863--41652058	53	3.7	52	80	7	196	44	18	16	19	1.87
41651850--41652060	27	8.0	26	80	5	165	44	18	17	19	1.88
41651854--41652073	80	2.7	80	78	10	202	45	17	16	19	1.85
41662461--41662563	51	2.0	51	98	0	197	36	8	17	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41668897--41668937	20	2.0	20	86	9	57	73	2	0	24	0.96
41669250--41669289	21	2.0	20	85	14	55	62	2	5	30	1.29
41669827--41669862	18	2.0	18	88	0	54	22	5	2	69	1.22
41670221--41670257	18	2.1	18	94	0	65	62	0	0	37	0.96
41670602--41670638	18	2.0	20	84	10	51	35	5	0	59	1.20
41671057--41671166	34	3.2	34	85	1	148	38	0	18	43	1.50
41671057--41671182	34	3.7	33	83	7	144	38	0	15	46	1.47
41671267--41671789	126	4.2	125	90	1	762	37	17	16	28	1.91
41671267--41671789	251	2.1	251	87	2	773	37	17	16	28	1.91
41674097--41674129	13	2.5	13	100	0	66	21	9	27	42	1.83
41676666--41676713	18	2.7	18	90	0	78	41	10	12	35	1.77
41687803--41687990	51	3.7	50	83	6	236	29	15	25	29	1.96
41691210--41691239	11	2.6	11	94	5	51	60	0	3	36	1.14
41691180--41691246	29	2.2	32	86	7	95	70	0	1	28	0.96
41691895--41692005	58	1.9	59	82	10	140	57	4	3	34	1.36
41722130--41722181	22	2.5	20	80	17	61	51	0	1	46	1.12
41728677--41728760	25	3.4	25	83	0	87	23	25	20	30	1.98
41734170--41734214	24	2.0	24	86	8	67	20	31	2	46	1.62
41735344--41735408	24	2.7	24	82	0	85	29	29	23	18	1.98
41739290--41739359	28	2.4	30	88	4	108	45	12	27	14	1.81
41739297--41739437	70	2.0	69	83	6	178	41	13	26	18	1.87
41739418--41739484	30	2.2	30	86	0	98	34	11	26	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41753966--41754089	29	4.2	29	81	4	115	22	27	14	35	1.93
41753968--41754076	29	3.7	29	84	7	130	22	28	12	35	1.91
41759235--41759575	51	6.7	51	79	4	357	30	26	14	28	1.95
41759245--41759575	152	2.2	153	84	3	427	30	26	14	28	1.95
41759235--41759575	102	3.4	102	85	3	429	30	26	14	28	1.95
41762603--41762683	41	2.0	42	82	7	103	32	24	13	29	1.94
41769814--41769865	24	2.2	24	85	0	68	51	9	3	34	1.53
41783253--41783595	50	6.9	50	85	1	413	21	29	21	27	1.99
41784100--41784127	8	3.5	8	100	0	56	21	25	0	53	1.46
41791359--41791392	18	1.9	17	88	5	50	23	11	11	52	1.70
41793677--41793707	15	2.1	15	93	0	53	32	9	6	51	1.60
41795742--41795777	14	2.5	15	90	4	56	19	5	11	63	1.46
41795880--41795922	18	2.3	19	92	4	70	25	2	2	69	1.12
41800068--41800135	32	2.1	32	100	0	136	33	19	8	38	1.82
41813219--41813258	21	1.9	21	89	0	62	15	27	2	55	1.53
41820276--41820873	27	22.1	27	83	1	678	42	21	17	17	1.88
41823694--41823730	19	1.9	19	89	10	58	35	24	0	40	1.55
41825022--41825051	12	2.5	12	94	0	51	43	0	36	20	1.52
41842620--41842652	16	2.0	17	88	5	50	27	3	18	51	1.60
41865067--41865130	31	2.1	31	87	0	92	18	18	7	54	1.67
41876668--41876713	20	2.3	21	88	7	69	47	19	10	21	1.80
41885846--41885893	23	2.1	23	96	0	87	41	8	4	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41888508--41888542	18	2.0	17	94	5	61	40	0	20	40	1.52
41895474--41895614	37	3.8	37	76	11	153	38	15	17	29	1.90
41895464--41895626	75	2.2	75	95	0	299	41	14	15	28	1.86
41896540--41896581	14	2.7	15	85	10	50	64	2	30	2	1.19
41898415--41898478	20	3.2	20	81	0	65	15	28	25	31	1.96
41900341--41900375	14	2.5	14	90	0	61	22	22	22	31	1.98
41901444--41901475	12	2.7	12	95	0	55	37	0	12	50	1.41
41901425--41901462	19	2.0	19	85	10	51	34	2	18	44	1.64
41903984--41904010	14	1.9	14	100	0	54	51	0	0	48	1.00
41904001--41904081	18	4.4	18	68	26	53	67	1	0	30	0.98
41904683--41904751	10	6.5	10	76	12	66	40	1	1	56	1.17
41904688--41904753	22	3.0	22	82	6	80	42	1	1	54	1.18
41904715--41904764	22	2.3	22	80	16	59	48	0	0	52	1.00
41906293--41906524	125	1.9	124	89	4	360	26	28	22	22	1.99
41907520--41907610	44	2.1	44	89	0	137	47	12	9	30	1.73
41908010--41908048	20	2.0	21	85	10	55	43	10	12	33	1.77
41914840--41914878	19	2.1	19	85	4	53	41	12	7	38	1.72
41918709--41918799	44	2.1	44	87	0	128	43	10	10	34	1.75
41937643--41937755	19	5.8	19	85	4	163	34	15	10	38	1.83
41937643--41937754	40	2.8	40	93	2	183	34	15	10	39	1.82
41941470--41941897	214	2.0	214	94	0	757	36	17	17	28	1.93
41947012--41947050	17	2.4	16	86	4	51	5	28	5	61	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41954676--41954865	45	4.2	45	87	2	274	35	16	20	26	1.94
41961860--41961898	19	2.1	19	100	0	78	25	33	10	30	1.89
41964704--41964987	41	6.9	41	86	1	345	20	19	28	31	1.97
41964704--41964987	83	3.5	81	84	4	354	20	19	28	31	1.97
41965346--41965401	14	4.1	14	76	19	55	23	0	35	41	1.55
41965330--41965418	21	4.2	21	72	13	67	23	0	37	39	1.55
41965842--41965894	21	2.5	22	84	3	63	20	0	28	50	1.48
41966613--41966764	73	2.1	73	80	7	166	27	14	20	37	1.91
41967266--41967475	105	2.0	105	95	0	375	26	18	12	42	1.86
41968941--41969000	31	2.0	31	96	3	113	46	13	3	36	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203