genome.fa.s17.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  127  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40364356--40364393	18	2.1	18	90	9	60	57	0	0	42	0.98
40364386--40364454	9	7.4	9	72	4	57	65	2	4	27	1.26
40364386--40364454	18	3.7	18	78	3	75	65	2	4	27	1.26
40364740--40364801	19	3.2	18	76	14	61	30	4	3	61	1.33
40364740--40364801	9	6.4	9	73	12	52	30	4	3	61	1.33
40375396--40375442	9	5.1	9	82	10	51	25	2	0	72	0.96
40375396--40375440	19	2.4	19	82	10	58	24	2	0	73	0.95
40389531--40389609	26	3.0	26	83	0	104	27	25	17	29	1.98
40390208--40390246	20	2.0	20	100	0	78	15	38	25	20	1.92
40404569--40404609	19	2.2	19	90	0	64	2	17	0	80	0.82
40412096--40412185	47	1.9	47	84	4	119	26	18	17	36	1.94
40412077--40412282	42	4.7	43	74	10	177	28	18	17	34	1.94
40412143--40412318	85	2.1	85	82	4	212	28	18	19	33	1.96
40412255--40412338	43	2.0	42	81	11	100	28	15	27	28	1.96
40423487--40423513	7	3.9	7	100	0	54	74	0	0	25	0.83
40423823--40423953	40	3.2	40	81	3	147	30	20	22	26	1.98
40423854--40423969	40	2.9	39	80	2	133	31	19	20	28	1.97
40424008--40424096	40	2.2	40	86	4	117	34	20	21	23	1.96
40423865--40424447	157	3.9	145	82	9	459	33	17	21	27	1.96
40423996--40424482	157	3.1	157	86	4	614	31	16	22	28	1.96
40424522--40424582	7	8.6	7	78	3	50	19	0	27	52	1.46
40424522--40424586	21	3.0	21	77	2	76	20	0	27	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40424529--40424617	43	2.1	43	80	4	99	22	0	23	53	1.46
40424608--40424652	14	3.2	14	87	6	65	20	0	28	51	1.48
40424620--40424658	7	5.6	7	85	11	53	15	0	30	53	1.42
40424613--40424658	21	2.2	21	92	0	74	15	0	30	54	1.41
40424864--40424944	14	5.9	14	73	13	60	20	1	28	49	1.57
40424911--40424965	7	7.9	7	81	18	62	16	0	30	52	1.44
40424885--40424965	21	3.9	21	80	9	94	17	1	30	50	1.54
40424914--40424972	14	4.2	14	78	8	57	16	0	32	50	1.46
40424918--40424987	21	3.3	21	81	2	77	15	1	37	45	1.55
40424961--40425016	29	1.9	29	88	0	85	19	3	37	39	1.69
40425811--40425895	43	2.1	41	87	10	122	28	25	9	36	1.87
40427746--40427993	43	5.8	43	82	6	279	28	33	17	19	1.95
40431959--40431990	14	2.2	15	94	5	57	40	31	0	28	1.57
40433141--40433188	25	1.9	25	95	0	87	62	2	0	35	1.07
40433255--40433304	23	2.2	23	86	13	68	40	46	0	14	1.44
40433317--40433357	14	2.9	15	82	10	59	39	31	0	29	1.57
40433297--40433373	22	3.6	22	72	8	70	38	33	0	27	1.57
40433716--40434031	41	7.8	40	80	7	282	30	28	20	20	1.98
40433716--40434029	82	3.9	81	81	6	329	30	28	21	20	1.98
40433716--40434029	123	2.6	118	82	4	371	30	28	21	20	1.98
40436609--40436641	3	11.0	3	100	0	66	66	0	0	33	0.92
40438320--40438353	17	2.1	17	88	5	52	41	2	0	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40439585--40439641	28	2.0	28	93	0	96	40	5	0	54	1.23
40439847--40439915	4	17.5	4	74	16	56	73	0	26	0	0.83
40439841--40439922	10	8.3	10	76	12	80	71	0	28	0	0.86
40439827--40439936	37	2.8	40	79	10	118	67	0	32	0	0.91
40439849--40439936	27	3.0	27	79	14	70	70	0	29	0	0.88
40439876--40439916	13	3.1	13	85	3	55	78	0	21	0	0.76
40439844--40439936	37	2.4	38	87	3	125	70	0	29	0	0.87
40440714--40440749	18	2.1	17	89	5	54	19	0	5	75	1.00
40440786--40440878	24	3.5	27	84	12	131	40	8	1	49	1.40
40442197--40442233	17	2.2	17	100	0	74	29	16	8	45	1.76
40445776--40445804	3	9.7	3	100	0	58	65	0	0	34	0.93
40445650--40445792	61	2.4	59	79	12	143	52	11	1	34	1.46
40446269--40446336	28	2.5	26	76	17	68	52	2	4	39	1.36
40456593--40456804	53	4.0	53	86	2	246	36	12	22	28	1.90
40459579--40459608	15	2.0	15	100	0	60	80	0	20	0	0.72
40474644--40474716	29	2.5	28	85	14	96	28	15	28	27	1.96
40474699--40475117	145	2.9	145	97	0	784	30	15	23	31	1.95
40482905--40482977	29	2.5	28	85	14	96	28	15	28	27	1.96
40482935--40483262	174	1.9	174	96	0	611	29	14	24	31	1.94
40485943--40485984	16	2.6	16	84	0	57	42	0	28	28	1.56
40485935--40486011	41	1.9	40	91	2	127	44	2	25	27	1.67
40487741--40487942	85	2.4	83	87	2	296	30	16	21	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40493801--40493851	23	2.2	23	89	0	75	43	21	7	27	1.80
40504944--40504986	23	1.9	23	90	4	70	39	18	4	37	1.72
40506959--40507165	49	4.2	49	88	4	267	33	19	15	30	1.94
40513074--40513116	23	1.9	23	90	4	70	39	18	4	37	1.72
40515145--40515182	19	2.0	19	100	0	76	36	10	21	31	1.87
40517734--40517777	23	1.9	23	95	0	79	45	0	27	27	1.54
40517982--40518018	9	4.1	9	92	0	65	29	10	13	45	1.77
40525090--40525191	27	3.8	27	77	0	96	28	19	17	34	1.95
40528165--40528224	25	2.5	23	81	10	75	13	6	18	61	1.53
40528165--40528221	12	4.7	12	72	12	53	12	5	19	63	1.47
40530343--40530503	44	3.6	45	78	12	147	27	22	20	29	1.98
40530531--40530646	45	2.6	45	81	14	150	28	25	18	27	1.98
40530377--40530655	147	1.9	147	93	0	477	27	22	19	30	1.98
40530667--40530778	44	2.5	44	78	8	120	32	19	19	28	1.97
40546054--40546094	17	2.3	19	76	16	52	36	14	14	34	1.87
40552998--40553498	46	11.6	45	81	13	601	34	14	22	28	1.93
40553035--40553455	82	5.0	82	80	11	483	35	14	21	28	1.93
40553117--40553455	128	2.6	128	97	0	624	35	14	21	28	1.93
40552998--40553455	128	3.6	127	89	4	604	35	13	22	28	1.92
40554474--40554527	21	2.7	19	77	13	56	42	14	11	31	1.81
40559644--40559692	21	2.3	21	78	0	53	44	14	22	18	1.85
40559673--40559773	42	2.4	42	81	0	112	42	15	22	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40561383--40561504	57	2.1	57	82	7	149	47	4	17	30	1.68
40564253--40565248	42	23.7	42	96	0	1733	33	21	21	23	1.97
40565325--40565358	14	2.4	14	95	0	59	52	20	8	17	1.71
40565584--40565639	21	2.7	21	80	5	60	3	42	19	33	1.69
40570486--40570847	19	19.5	19	68	23	147	33	0	19	46	1.50
40570517--40570894	26	14.1	26	85	12	498	33	0	19	46	1.50
40570604--40570894	53	5.5	53	98	1	518	33	0	18	47	1.49
40570734--40570856	9	13.9	9	66	27	50	36	0	19	43	1.51
40570931--40571080	73	2.1	73	100	0	300	41	6	1	50	1.37
40570962--40571074	35	3.1	35	67	16	104	38	7	1	52	1.41
40573153--40573197	13	3.5	13	87	0	72	51	2	6	40	1.41
40573153--40573219	23	2.8	24	84	11	75	49	2	7	40	1.46
40573202--40573614	17	23.6	17	90	7	641	37	0	15	46	1.50
40573491--40573597	40	2.7	40	94	2	189	43	1	11	42	1.51
40574959--40574998	11	3.7	11	93	3	64	27	27	10	35	1.89
40576425--40576454	14	2.1	14	100	0	60	53	6	13	26	1.64
40576590--40576932	71	4.8	71	97	0	634	49	18	5	26	1.70
40577239--40577285	22	2.1	22	96	0	85	40	23	8	27	1.83
40578393--40578447	22	2.6	21	76	2	56	40	34	1	23	1.66
40578427--40578497	14	5.0	14	69	16	56	40	35	1	22	1.63
40578716--40579058	113	3.0	113	87	2	472	27	23	18	30	1.98
40578849--40579721	321	2.7	323	86	6	1198	27	21	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40579060--40579839	113	6.9	112	82	5	710	27	22	18	32	1.97
40579072--40579839	227	3.4	225	79	5	694	27	22	18	31	1.97
40579060--40579839	340	2.3	340	84	3	953	27	22	18	32	1.97
40584020--40584083	28	2.2	30	80	5	78	56	1	6	35	1.34
40593791--40593831	21	2.0	21	95	0	73	19	26	21	31	1.97
40596243--40596544	150	2.0	150	99	0	595	42	19	13	25	1.87
40598702--40598742	21	2.0	21	90	0	64	19	29	21	29	1.98
40604554--40604848	128	2.3	127	83	4	371	52	7	3	36	1.44
40605551--40605641	30	3.0	30	96	0	173	27	9	19	42	1.83
40611225--40611270	23	2.0	23	95	0	83	39	10	26	23	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203