genome.fa.s17.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  14  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4656814--4657002	35	5.3	35	69	10	125	23	20	20	35	1.96
4656711--4657049	142	2.4	142	81	3	396	23	21	19	35	1.96
4656723--4657037	71	4.4	70	81	6	321	23	21	20	34	1.96
4665671--4665702	12	2.6	13	85	14	50	56	6	0	37	1.25
4667829--4667871	19	2.3	19	88	8	61	23	9	9	58	1.58
4668554--4668592	17	2.2	18	86	13	55	51	0	10	38	1.36
4668567--4668625	13	4.6	13	76	4	57	55	1	3	38	1.26
4668585--4668619	4	8.5	4	93	6	61	54	0	0	45	0.99
4668577--4668615	17	2.3	17	90	0	60	56	0	2	41	1.13
4669494--4669534	15	2.5	17	88	11	68	68	0	0	31	0.90
4680717--4680759	21	2.1	20	83	12	52	48	4	6	39	1.51
4685205--4685260	21	2.6	21	83	8	60	26	21	17	33	1.96
4686668--4686820	76	2.0	77	97	1	290	22	16	13	47	1.82
4695963--4696012	19	2.5	20	87	3	66	62	4	8	26	1.41
4708949--4709012	25	2.6	25	78	9	76	32	23	17	26	1.96
4710252--4710288	16	2.3	16	85	0	56	67	0	8	24	1.17
4711548--4711573	12	2.2	12	100	0	52	46	7	7	38	1.61
4717642--4717937	50	5.8	50	78	9	244	28	23	27	20	1.99
4719642--4719880	48	5.0	48	86	0	307	25	27	20	27	1.99
4723109--4723182	29	2.6	29	89	4	107	43	18	14	22	1.87
4731545--4731988	167	2.7	167	93	0	746	32	13	18	35	1.89
4746807--4747094	144	2.0	144	95	0	513	29	15	12	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4751664--4751742	37	2.1	37	90	0	122	25	31	18	24	1.98
4751861--4752428	47	12.1	47	98	0	1064	29	30	8	31	1.87
4759009--4759079	16	4.4	16	92	0	115	36	5	29	28	1.80
4761261--4761313	24	2.2	25	77	12	58	45	18	3	32	1.68
4767207--4767334	42	3.0	42	77	17	138	28	31	18	21	1.97
4770768--4770799	16	2.0	16	93	0	55	46	0	0	53	1.00
4770761--4770947	58	3.2	58	72	14	159	39	4	4	50	1.45
4770818--4770971	58	2.6	60	78	12	163	39	4	6	49	1.49
4772810--4772870	27	2.3	27	97	0	113	27	19	31	21	1.97
4772978--4773019	17	2.4	17	84	11	50	64	0	35	0	0.94
4773156--4773341	21	9.1	21	77	13	176	30	0	13	55	1.42
4773137--4773366	120	1.9	118	86	7	322	29	0	14	55	1.43
4773155--4773344	19	9.4	19	77	17	163	30	0	13	55	1.43
4773406--4773527	60	2.0	60	85	3	165	30	0	13	54	1.45
4773644--4773680	16	2.4	15	90	4	56	35	2	2	59	1.26
4774003--4774325	162	2.0	162	98	0	628	20	23	28	28	1.99
4778736--4778813	27	2.9	27	82	3	86	24	34	21	19	1.96
4779644--4779695	26	2.0	26	88	3	79	46	0	3	50	1.20
4779658--4779794	61	2.3	57	82	6	157	52	2	0	43	1.21
4779705--4779823	12	10.5	11	68	22	61	51	3	0	45	1.18
4779757--4779827	34	2.1	35	84	12	94	49	2	0	47	1.16
4784570--4784638	3	22.3	3	73	16	52	60	2	2	33	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4784576--4784665	44	2.0	44	100	0	180	56	4	4	34	1.39
4784589--4784659	22	3.2	22	69	15	74	56	4	5	33	1.42
4784586--4784659	25	3.2	25	67	21	79	56	4	5	33	1.41
4786001--4786025	13	1.9	13	100	0	50	40	48	0	12	1.40
4785996--4786030	18	1.9	18	94	0	61	40	48	0	11	1.39
4786137--4786194	9	6.4	9	89	0	80	24	6	24	44	1.77
4786145--4786194	18	2.8	18	96	0	91	24	8	24	44	1.80
4786356--4786380	12	2.1	12	100	0	50	16	24	36	24	1.94
4788489--4788532	22	2.0	22	86	0	61	72	2	13	11	1.21
4788691--4788759	27	2.6	27	85	0	93	27	27	30	14	1.95
4788849--4788888	11	3.7	11	86	6	64	70	0	30	0	0.88
4788848--4788886	21	1.9	20	94	5	69	69	0	30	0	0.89
4789892--4789928	18	2.1	18	94	0	65	43	5	40	10	1.63
4795666--4795747	29	2.8	29	79	18	80	0	31	0	68	0.90
4795695--4795796	15	6.4	16	65	17	50	0	29	0	69	0.95
4795718--4795745	10	2.8	10	100	0	56	0	32	0	67	0.91
4795688--4795838	26	5.8	25	69	18	78	0	32	1	66	1.00
4795689--4795836	80	1.9	80	89	2	235	0	31	1	66	1.00
4795689--4795851	85	2.0	79	81	9	184	0	33	1	65	1.00
4795703--4795822	20	6.0	21	70	19	94	0	33	0	65	0.98
4795772--4795853	26	3.2	27	69	10	73	0	35	2	62	1.09
4795667--4795853	80	2.3	79	77	8	216	0	33	1	65	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4795879--4795957	27	2.9	27	80	0	86	18	26	25	29	1.98
4797858--4797892	18	2.0	18	94	5	63	57	0	0	42	0.99
4797957--4798008	15	3.6	15	80	12	56	53	1	0	44	1.11
4797841--4798129	120	2.4	120	90	2	451	50	4	2	42	1.36
4798127--4798280	47	3.3	46	67	19	131	44	3	4	47	1.42
4798173--4798225	28	2.0	28	85	7	74	43	3	3	49	1.38
4798146--4798351	91	2.3	91	100	0	412	41	4	5	49	1.45
4798174--4798231	28	2.2	26	81	6	62	46	3	3	46	1.36
4798264--4798316	28	2.0	28	85	7	74	43	3	3	49	1.38
4798171--4798313	44	3.2	44	67	20	132	42	3	4	48	1.41
4798265--4798322	28	2.2	26	81	6	62	46	3	3	46	1.36
4798377--4798404	6	4.7	6	100	0	56	53	17	0	28	1.44
4802365--4802429	16	4.1	16	87	0	103	44	4	29	21	1.72
4802406--4802503	44	2.2	44	85	5	135	35	5	26	32	1.78
4802634--4802691	16	3.9	15	80	8	57	51	1	0	46	1.11
4802676--4802983	61	5.1	61	68	17	221	48	5	2	43	1.41
4802639--4802989	120	2.9	120	96	0	648	48	5	2	43	1.40
4802781--4802815	18	2.0	17	88	5	52	54	0	0	45	0.99
4802890--4802931	15	2.9	15	82	10	52	52	0	0	47	1.00
4804926--4805477	274	2.0	277	97	1	1038	33	23	12	30	1.92
4812939--4813028	27	3.3	27	88	0	126	42	21	16	20	1.89
4814793--4814876	26	3.2	25	72	9	69	20	14	33	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4816164--4816224	25	2.4	25	86	2	77	31	9	13	45	1.75
4816831--4817573	370	2.0	370	85	3	1012	31	18	14	35	1.91
4829470--4829570	25	4.0	25	80	0	103	25	23	22	27	2.00
4829470--4829570	50	2.0	50	84	3	132	25	23	22	27	2.00
4829848--4829878	16	1.9	16	100	0	62	22	0	19	58	1.40
4831973--4832102	55	2.4	55	88	0	188	25	30	21	22	1.99
4837619--4837833	109	2.0	108	84	2	279	31	14	21	32	1.93
4840210--4840289	18	4.7	16	73	13	61	61	1	5	32	1.26
4840638--4840676	17	2.4	16	82	4	51	25	0	0	74	0.82
4841700--4841740	21	2.0	22	85	9	59	39	2	0	58	1.11
4841762--4841825	29	2.1	31	83	11	80	40	3	9	46	1.52
4843341--4843551	115	1.9	112	89	5	325	27	9	16	46	1.78
4844891--4845093	82	2.5	82	90	1	318	49	16	6	28	1.70
4847634--4847761	39	3.0	45	80	13	151	25	51	3	19	1.61
4847674--4847761	39	2.3	39	97	0	167	27	52	2	18	1.57
4850216--4850254	17	2.2	18	86	9	53	28	2	2	66	1.18
4862745--4862822	38	2.1	38	92	0	129	37	16	21	24	1.94
4867285--4868871	533	3.0	533	93	0	2717	26	22	15	35	1.94
4869284--4869357	27	2.7	27	85	4	78	18	24	17	39	1.92
4872372--4872420	22	2.2	22	85	0	62	32	14	22	30	1.93
4876117--4876178	26	2.4	26	91	0	97	33	11	14	40	1.82
4884477--4884505	12	2.3	13	94	5	51	65	6	6	20	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4886197--4886731	267	2.0	267	98	0	1034	32	20	15	30	1.94
4888301--4888392	21	4.4	21	77	8	80	40	26	16	17	1.90
4889549--4889584	19	1.9	19	88	5	56	36	5	8	50	1.56
4889661--4889730	30	2.3	30	95	0	122	40	1	7	51	1.38
4902322--4902412	44	2.1	44	87	4	130	27	13	10	48	1.75
4905089--4905185	38	2.6	36	83	3	113	51	7	9	31	1.61
4905120--4905197	38	2.1	37	83	7	95	51	8	8	30	1.64
4912781--4912836	16	3.5	16	85	0	76	33	7	28	30	1.84
4913223--4913280	27	2.1	27	80	6	62	31	12	6	50	1.66
4917507--4917821	156	2.0	156	89	0	486	27	14	26	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203