genome.fa.s17.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  129  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40958487--40958563	40	1.9	39	86	2	109	19	22	28	29	1.98
40962875--40962917	14	3.2	14	83	6	54	65	0	2	32	1.06
40967844--40968608	197	4.0	195	83	8	976	35	18	16	29	1.93
40967844--40968584	380	1.9	386	85	7	1038	35	18	15	29	1.93
40983655--40983695	11	3.6	11	90	3	64	34	0	0	65	0.93
40984333--40984410	37	2.1	37	83	4	95	33	3	2	60	1.28
40986760--40986795	18	2.0	18	100	0	72	55	16	16	11	1.68
40991673--40991703	16	1.9	16	93	0	53	29	16	12	41	1.85
41002133--41002165	16	2.1	16	94	5	59	81	0	0	18	0.68
41002133--41002165	5	6.4	5	93	6	57	81	0	0	18	0.68
41013699--41013799	49	2.2	46	85	7	132	46	7	5	39	1.57
41014414--41014525	58	1.9	57	96	0	197	51	19	7	20	1.69
41015633--41015681	16	3.0	17	77	22	68	36	16	10	36	1.82
41019883--41019923	21	2.0	21	90	0	64	24	0	4	70	1.06
41028477--41028559	31	2.8	29	78	8	78	39	6	12	42	1.67
41032848--41032893	17	2.7	17	79	0	65	4	0	34	60	1.16
41033532--41033566	13	2.7	13	90	0	52	62	11	11	14	1.54
41033711--41033804	49	2.0	49	89	4	147	34	20	17	28	1.95
41033758--41034127	72	5.0	72	91	6	573	33	18	16	31	1.94
41034091--41034196	54	1.9	55	83	5	135	39	19	13	27	1.89
41034176--41034209	13	2.5	13	90	4	50	58	8	11	20	1.59
41034047--41034534	140	3.5	140	94	1	852	37	20	17	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41034231--41034336	54	1.9	54	81	9	126	38	18	14	28	1.90
41034327--41034351	13	1.9	13	100	0	50	64	0	12	24	1.27
41034371--41034476	54	1.9	54	83	9	135	37	18	15	28	1.91
41042858--41042893	12	3.0	12	95	0	63	41	0	27	30	1.56
41044847--41044892	17	2.6	17	86	6	56	6	0	28	65	1.17
41044861--41044894	17	2.0	17	100	0	68	5	0	23	70	1.09
41047525--41047750	38	5.9	38	85	3	247	33	26	19	20	1.97
41047539--41047750	114	1.8	116	83	4	286	31	25	21	21	1.98
41051108--41051132	11	2.3	11	100	0	50	16	0	0	84	0.63
41051838--41051906	6	11.7	6	73	17	56	15	4	0	79	0.88
41051838--41051905	13	5.8	12	74	19	54	16	4	0	79	0.89
41052751--41052780	12	2.5	12	94	0	51	46	0	6	46	1.29
41053430--41053500	27	2.6	27	75	14	74	23	14	4	57	1.54
41054448--41054481	17	2.0	17	100	0	68	23	29	5	41	1.78
41055610--41055644	18	1.9	18	88	0	52	42	0	0	57	0.99
41059553--41059681	50	2.5	51	88	5	190	35	17	22	24	1.95
41059657--41059743	31	2.8	31	92	0	147	26	19	28	25	1.99
41059705--41059902	100	2.0	100	100	0	396	26	19	26	27	1.99
41059866--41060041	47	3.7	47	86	4	185	27	14	27	30	1.95
41062399--41062437	20	2.0	20	89	0	60	38	33	7	20	1.81
41063734--41063993	131	2.0	131	87	2	371	35	18	17	28	1.93
41064316--41064344	7	4.1	7	100	0	58	82	0	0	17	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41066374--41066415	21	1.9	23	85	9	61	50	7	4	38	1.51
41067267--41067303	19	2.0	19	89	5	58	51	0	48	0	1.00
41067325--41067366	18	2.3	18	76	11	50	9	42	33	14	1.78
41068305--41068330	13	2.0	13	100	0	52	53	0	0	46	1.00
41068352--41068384	5	6.8	5	93	6	59	81	0	0	18	0.68
41068353--41068383	9	3.3	9	95	4	53	80	0	0	19	0.71
41068352--41068384	14	2.3	15	94	5	59	81	0	0	18	0.68
41074362--41074419	3	20.3	3	81	13	61	31	1	1	65	1.13
41074526--41074550	13	1.9	13	100	0	50	40	0	4	56	1.18
41076112--41076158	21	2.2	22	92	3	78	21	19	38	21	1.94
41079107--41079185	38	2.1	38	97	0	149	36	15	13	34	1.87
41083234--41083289	26	2.2	26	83	0	67	17	14	16	51	1.76
41087829--41087890	3	21.0	3	74	9	56	59	0	8	32	1.26
41091908--41092091	62	3.0	62	93	0	314	41	20	4	33	1.73
41092023--41092215	96	2.0	96	95	0	350	40	20	10	28	1.85
41093411--41093461	10	4.7	10	80	17	57	84	1	7	5	0.85
41093411--41093462	23	2.4	22	87	12	72	82	3	7	5	0.93
41093888--41093949	13	4.6	13	75	11	54	83	0	11	4	0.78
41093890--41093930	21	2.0	21	95	0	73	85	0	7	7	0.75
41093887--41093949	11	5.5	11	78	12	65	82	0	12	4	0.82
41094272--41094471	108	1.9	108	84	2	276	25	16	11	47	1.79
41098336--41098397	3	20.0	3	77	6	61	32	1	6	59	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41098339--41098400	23	2.8	22	87	4	81	32	1	8	58	1.37
41098363--41098408	23	2.0	23	82	0	56	30	4	10	54	1.55
41098425--41098472	24	2.0	24	84	12	62	29	4	0	66	1.10
41102415--41102481	34	2.0	34	100	0	134	35	16	11	35	1.86
41104580--41104634	28	2.0	28	85	0	74	12	21	20	45	1.84
41104554--41104709	71	2.2	71	93	1	269	12	23	16	47	1.80
41104652--41104710	28	2.1	28	87	0	82	11	23	20	44	1.85
41105424--41105455	17	1.9	17	93	6	57	56	6	6	31	1.49
41115699--41115740	20	2.1	20	82	8	50	11	33	0	54	1.37
41119825--41119867	11	3.8	11	82	11	52	62	11	0	25	1.29
41119901--41119947	21	2.1	22	84	7	60	55	10	12	21	1.67
41124217--41124329	44	2.5	45	88	1	165	38	10	24	25	1.88
41125576--41125781	102	2.0	102	99	0	403	30	14	21	33	1.93
41128690--41128722	17	1.9	18	88	11	52	45	0	12	42	1.41
41135588--41135618	3	10.3	3	100	0	62	35	0	0	64	0.94
41135926--41136005	40	2.0	40	100	0	160	32	10	2	55	1.47
41141797--41141834	14	2.5	15	87	8	51	68	0	15	15	1.22
41143076--41143343	86	3.1	86	89	1	419	26	22	25	26	2.00
41143549--41143941	44	9.1	44	67	13	188	29	17	24	28	1.97
41143501--41143954	173	2.6	173	88	2	662	29	17	24	28	1.97
41145418--41145474	3	19.0	3	96	0	96	33	3	0	63	1.12
41150068--41150109	18	2.3	18	95	4	75	50	4	0	45	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41150414--41150445	2	16.0	2	93	0	55	53	0	0	46	1.00
41150590--41150694	41	2.6	41	75	6	97	30	31	20	17	1.96
41156795--41156908	52	2.2	53	83	3	140	22	9	27	40	1.85
41156795--41156912	26	4.5	26	73	7	103	22	10	27	38	1.87
41157407--41157613	101	2.0	101	99	0	405	24	3	25	46	1.69
41157439--41157643	101	2.0	98	85	6	266	24	6	23	44	1.76
41171241--41171273	11	2.8	12	86	4	50	33	3	12	51	1.54
41177328--41177358	15	2.1	15	93	0	53	32	12	9	45	1.75
41184326--41184366	21	2.0	21	85	9	57	36	2	17	43	1.62
41184415--41184483	23	3.0	23	66	19	61	39	2	14	43	1.60
41184415--41184489	24	3.2	24	71	16	75	40	2	14	42	1.60
41197028--41197053	13	2.0	13	100	0	52	46	0	0	53	1.00
41199987--41200170	51	3.6	50	73	11	171	23	17	29	29	1.97
41200405--41200436	16	2.0	16	93	0	55	59	0	15	25	1.36
41205800--41205861	24	2.6	24	84	0	79	61	20	4	12	1.50
41205800--41205869	24	2.9	24	84	0	77	61	21	4	12	1.48
41207216--41207291	36	2.1	36	80	11	84	38	9	1	51	1.42
41207373--41207411	21	1.9	20	89	5	60	33	7	2	56	1.41
41212371--41213129	44	17.7	44	78	11	672	26	18	26	28	1.98
41212371--41213129	132	5.9	132	77	10	743	26	18	26	28	1.98
41212676--41212740	34	1.9	34	90	0	103	23	21	24	30	1.99
41212932--41213081	78	1.9	78	89	2	230	25	18	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41212651--41213282	298	2.1	297	93	2	1054	28	19	24	27	1.99
41213230--41213389	88	1.8	88	81	4	198	31	16	21	29	1.96
41213228--41213466	44	5.5	44	74	7	154	29	19	22	28	1.98
41213393--41213480	44	2.0	44	82	4	106	31	22	22	22	1.98
41213939--41213996	19	2.7	22	84	10	68	36	8	17	37	1.80
41214526--41214601	36	2.1	36	80	11	84	38	9	1	51	1.42
41216752--41216855	31	3.4	29	71	23	81	47	0	3	48	1.26
41217732--41217855	55	2.2	55	87	4	178	54	2	5	37	1.37
41227581--41227620	20	2.0	20	95	0	71	10	7	50	32	1.64
41228264--41228387	34	3.6	34	85	0	158	33	8	14	43	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203