genome.fa.s17.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  113  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35713700--35713906	45	4.6	44	74	17	187	28	20	25	26	1.99
35713700--35713906	89	2.3	89	92	0	351	28	20	25	26	1.99
35713790--35714470	217	3.1	217	90	0	1056	29	20	22	28	1.98
35713700--35714383	44	15.6	44	68	14	221	28	20	23	27	1.99
35713619--35714421	44	18.4	43	66	14	217	28	20	23	27	1.99
35716486--35716534	16	3.1	16	93	0	80	28	0	36	34	1.58
35716486--35716543	16	3.6	16	92	0	71	32	0	34	32	1.58
35716536--35716628	44	2.1	44	81	2	105	32	6	26	34	1.82
35716789--35716823	18	2.0	17	88	5	52	54	0	0	45	0.99
35716923--35716964	15	2.7	16	82	14	52	52	2	0	45	1.13
35716932--35716973	15	2.9	15	82	10	52	52	0	0	47	1.00
35716675--35716989	154	2.0	157	95	2	564	44	3	5	46	1.41
35716921--35717217	120	2.5	121	90	6	462	50	5	2	41	1.39
35717042--35717093	15	3.6	15	80	12	56	53	1	0	44	1.11
35717019--35717109	44	2.1	43	81	6	103	53	3	2	40	1.29
35716961--35717144	59	3.1	59	65	21	148	49	7	2	41	1.42
35717178--35717216	17	2.5	15	80	15	51	51	0	5	43	1.24
35717183--35717216	17	2.0	17	94	0	59	50	0	5	44	1.26
35717249--35717443	93	2.1	92	88	4	286	47	4	4	44	1.41
35718844--35718870	11	2.5	11	100	0	54	51	18	7	22	1.70
35725281--35725324	15	2.9	15	86	10	54	59	0	0	40	0.98
35727820--35727849	15	2.0	15	93	0	51	16	13	23	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35731701--35731781	29	3.0	26	80	16	94	62	3	0	33	1.12
35733451--35733558	44	2.5	43	79	5	112	29	17	21	31	1.96
35733478--35733772	44	6.8	43	73	12	210	28	23	18	29	1.98
35733809--35734070	50	5.3	50	67	5	181	27	22	19	30	1.98
35733866--35734120	50	5.1	49	67	3	170	26	20	20	32	1.97
35733783--35734188	99	4.1	99	88	1	553	25	22	21	31	1.98
35742483--35742524	22	2.0	22	90	4	68	61	4	0	33	1.17
35745331--35745373	11	3.8	11	77	17	52	62	4	2	30	1.28
35749128--35749288	87	1.9	86	88	1	241	27	14	21	36	1.92
35751588--35751636	20	2.5	20	96	0	89	20	16	0	63	1.31
35752359--35752404	16	2.8	17	83	9	60	39	0	2	58	1.10
35768309--35768339	16	1.9	16	93	0	53	74	3	0	22	0.96
35770981--35771032	25	2.1	25	92	7	88	25	26	9	38	1.86
35779647--35779703	22	2.5	22	88	2	87	26	33	0	40	1.56
35780869--35780893	7	3.6	7	100	0	50	28	0	12	60	1.32
35782390--35782607	116	1.9	116	98	0	418	38	9	9	43	1.69
35782583--35782624	17	2.4	18	80	4	50	42	9	2	45	1.49
35788268--35788377	41	2.7	41	81	1	132	32	17	29	20	1.96
35791844--35791902	30	1.9	31	89	3	93	30	20	1	47	1.60
35792613--35792660	25	1.9	25	100	0	96	37	18	22	20	1.94
35793706--35794240	127	4.3	126	85	5	702	30	16	22	30	1.96
35797250--35797428	53	3.2	53	67	17	155	42	6	8	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35797269--35797434	37	4.4	38	65	19	105	42	6	8	42	1.61
35797250--35797528	114	2.4	114	98	0	531	41	7	8	42	1.63
35797528--35798110	21	26.7	21	79	7	574	26	1	29	42	1.64
35797531--35798020	43	11.4	43	84	2	610	26	1	30	42	1.62
35797748--35797777	15	2.0	15	93	0	51	30	0	26	43	1.55
35797968--35798065	27	3.8	27	85	9	134	22	4	32	40	1.73
35797528--35798110	43	13.3	42	79	8	574	26	1	29	42	1.64
35800336--35800392	25	2.3	25	71	0	60	26	7	12	54	1.63
35802121--35802184	2	33.0	2	73	6	51	46	1	6	45	1.37
35802117--35802184	10	7.0	10	71	18	63	45	1	7	45	1.40
35802134--35802186	22	2.7	20	81	16	65	49	0	7	43	1.31
35802106--35802177	12	6.3	12	72	18	57	45	1	8	44	1.42
35802242--35802300	25	2.4	25	80	8	66	52	1	8	37	1.42
35802847--35803158	89	3.5	89	69	13	260	28	22	18	30	1.98
35802765--35803153	181	2.2	181	88	1	584	29	21	18	29	1.97
35803006--35803363	143	2.5	143	88	2	528	27	20	19	31	1.97
35803187--35803273	44	2.0	44	81	6	104	20	22	26	29	1.99
35803332--35803405	36	2.1	36	89	0	112	31	21	21	25	1.98
35803367--35803518	51	3.0	51	76	1	162	28	27	16	27	1.97
35803487--35803529	21	2.1	21	86	4	61	20	30	9	39	1.84
35803394--35803892	123	3.9	123	73	10	412	28	24	16	31	1.96
35803507--35803630	51	2.4	50	82	6	149	27	23	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35803545--35803717	87	2.0	87	80	4	197	30	20	19	29	1.97
35803518--35803768	138	1.8	138	83	1	333	29	20	18	31	1.96
35803761--35803800	21	1.9	21	89	0	62	22	30	7	40	1.81
35803311--35803875	261	2.2	261	87	1	785	28	24	17	30	1.97
35803782--35803953	51	3.4	51	87	0	227	27	26	16	30	1.97
35803654--35804050	174	2.3	174	85	3	539	28	24	16	31	1.96
35805397--35805437	17	2.3	19	83	8	50	7	17	0	75	1.02
35805426--35805476	26	2.0	26	92	3	86	23	1	5	68	1.22
35808949--35809004	10	6.0	10	72	16	57	46	1	7	44	1.41
35808962--35809039	32	2.6	29	82	13	95	52	0	6	41	1.27
35809096--35809123	3	9.3	3	100	0	56	67	0	0	32	0.91
35810094--35810165	34	2.1	34	92	0	117	18	16	52	12	1.74
35810435--35810772	82	4.1	82	89	0	478	26	13	14	45	1.82
35811125--35811324	82	2.4	81	79	5	222	27	14	13	45	1.81
35821915--35821951	20	1.9	19	89	10	58	29	27	10	32	1.90
35823624--35823671	24	2.0	24	83	0	60	45	4	10	39	1.58
35824777--35825151	82	4.6	81	85	2	446	27	12	12	46	1.78
35824778--35825151	163	2.3	164	84	2	466	27	12	12	47	1.78
35840540--35840879	82	4.1	82	87	0	457	27	12	13	46	1.79
35844119--35844152	15	2.3	15	89	0	50	58	8	14	17	1.61
35846513--35846818	44	6.9	44	75	3	238	29	25	16	28	1.97
35866923--35866973	18	2.9	17	82	5	57	31	27	7	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35867209--35867243	15	2.4	15	95	4	63	42	31	5	20	1.75
35867185--35867373	85	2.2	85	84	0	245	32	28	17	21	1.96
35867209--35867373	14	11.5	15	73	9	105	33	29	16	21	1.95
35867221--35867373	43	3.6	44	73	9	145	32	28	17	21	1.96
35869126--35869150	12	2.1	12	100	0	50	44	16	8	32	1.76
35870543--35870596	15	3.5	15	75	5	54	27	27	22	22	1.99
35870597--35870663	15	4.5	15	79	7	64	25	35	14	23	1.94
35870623--35870662	14	2.7	14	88	7	53	22	30	20	27	1.98
35870696--35870758	30	2.1	30	84	0	81	28	34	12	23	1.92
35880177--35880254	30	2.6	30	83	4	104	28	23	24	24	2.00
35887623--35887657	15	2.3	15	100	0	70	31	5	42	20	1.75
35914179--35914204	11	2.4	11	100	0	52	34	19	0	46	1.50
35917321--35917359	19	2.1	19	85	0	51	43	2	10	43	1.52
35918808--35918915	51	2.1	52	84	1	146	39	7	20	32	1.80
35922260--35922285	11	2.4	11	100	0	52	34	19	0	46	1.50
35925402--35925440	19	2.1	19	85	0	51	43	2	10	43	1.52
35926889--35926996	51	2.1	52	84	1	146	39	7	20	32	1.80
35929473--35929980	250	2.0	250	95	0	910	27	12	28	32	1.92
35930549--35930693	40	3.7	40	82	9	165	25	22	26	25	2.00
35930549--35930726	80	2.3	79	79	7	175	26	21	26	24	1.99
35930695--35930790	48	2.0	48	97	0	183	29	15	28	27	1.96
35931352--35931469	59	2.0	59	98	0	227	29	15	24	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35931859--35932058	100	2.0	100	99	0	391	31	19	23	26	1.98
35935227--35935344	43	2.8	42	78	7	139	31	15	23	29	1.95
35939044--35939127	41	2.0	41	93	4	143	19	22	8	50	1.74
35951752--35951929	27	6.6	27	85	3	214	26	14	28	30	1.95
35951753--35951908	82	1.9	81	89	3	242	26	14	28	30	1.95
35951749--35951929	82	2.2	81	84	2	238	27	14	27	30	1.95
35954412--35954495	36	2.4	35	80	5	100	30	22	21	25	1.98
35954405--35954491	34	2.5	34	79	5	95	31	24	19	25	1.98
35968375--35968549	42	4.0	42	69	12	111	28	25	18	26	1.98
35968373--35968591	90	2.4	90	80	3	226	29	25	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203