genome.fa.s17.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  93  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29412229--29412270	15	2.7	16	82	14	52	52	2	0	45	1.13
29412238--29412279	15	2.9	15	82	10	52	52	0	0	47	1.00
29412445--29412505	28	2.2	28	85	5	81	50	3	0	45	1.17
29420198--29420268	25	2.7	27	80	8	76	33	21	23	21	1.97
29420413--29420478	26	2.6	26	88	4	100	37	22	22	16	1.93
29422823--29422929	30	3.6	30	87	0	115	34	22	20	22	1.97
29423039--29423166	26	4.9	26	79	3	114	40	21	21	17	1.91
29423341--29423538	27	7.3	27	77	3	166	20	16	18	44	1.87
29423381--29423539	81	2.0	81	83	2	203	22	14	18	45	1.85
29426038--29426079	12	3.5	12	83	0	57	66	2	21	9	1.32
29426064--29426106	20	2.1	20	86	4	59	60	2	27	9	1.40
29427277--29427313	14	2.6	14	86	0	56	37	0	45	16	1.47
29431788--29431826	5	7.6	5	82	5	51	41	17	0	41	1.50
29432098--29432136	19	2.1	19	100	0	78	38	20	5	35	1.75
29432593--29432625	13	2.4	14	90	5	50	39	12	6	42	1.67
29434115--29434146	15	2.1	15	100	0	64	62	6	6	25	1.42
29436347--29436408	31	2.0	31	90	0	97	40	11	24	24	1.87
29436523--29436552	7	4.4	7	95	4	53	43	0	0	56	0.99
29437067--29437109	22	2.0	21	86	4	59	4	41	2	51	1.35
29437067--29437118	21	2.4	22	83	3	61	5	38	1	53	1.36
29437953--29437991	19	2.0	19	85	5	51	82	0	7	10	0.86
29442664--29442717	27	2.0	27	85	0	72	31	22	5	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29455053--29455081	11	2.6	11	100	0	58	51	0	0	48	1.00
29455124--29455149	11	2.4	11	100	0	52	53	0	7	38	1.30
29457934--29457985	21	2.4	22	83	3	61	53	1	38	5	1.36
29465849--29465956	44	2.4	43	78	6	117	28	19	19	32	1.96
29465975--29466770	51	15.9	51	81	6	831	28	24	17	29	1.97
29465885--29466238	194	1.8	194	88	2	550	27	22	18	31	1.98
29470633--29470679	19	2.5	20	86	6	62	44	8	19	27	1.79
29472526--29472559	17	1.9	18	88	5	52	58	20	2	17	1.51
29474725--29474789	29	2.2	29	86	0	94	10	35	27	26	1.90
29478600--29478780	59	3.1	59	100	0	362	18	26	21	33	1.96
29480090--29480127	18	2.1	19	85	5	51	42	15	7	34	1.76
29480352--29480392	21	1.9	22	85	5	57	43	29	0	26	1.55
29480364--29480669	151	2.0	151	98	1	587	40	18	5	35	1.75
29480772--29480820	25	2.0	25	95	0	89	26	22	24	26	2.00
29483062--29483104	22	2.1	20	83	12	52	53	9	11	25	1.67
29484043--29484345	41	7.4	40	76	4	237	14	23	27	34	1.94
29484043--29484324	82	3.5	82	88	4	381	14	23	28	33	1.94
29484043--29484344	163	1.8	164	81	4	378	14	23	27	34	1.94
29491484--29491549	26	2.5	27	85	11	93	37	10	0	51	1.37
29492142--29492174	10	3.3	10	100	0	66	48	0	0	51	1.00
29492142--29492180	20	2.0	20	89	0	60	46	2	2	48	1.29
29492036--29492656	234	2.5	251	79	8	715	37	9	6	45	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29492840--29492885	19	2.3	20	85	3	67	41	2	10	45	1.51
29496237--29496280	19	2.3	19	88	7	63	25	20	0	54	1.45
29498998--29499046	22	2.1	24	82	14	59	34	12	0	53	1.39
29510009--29510039	7	4.4	7	95	0	53	22	3	0	74	0.96
29510809--29510841	13	2.4	14	90	10	50	48	0	3	48	1.17
29513727--29513802	29	2.5	31	82	4	93	25	11	14	48	1.77
29513730--29513802	31	2.4	29	81	4	83	26	12	13	47	1.78
29525195--29525225	8	3.9	8	91	0	53	51	12	0	35	1.40
29526472--29526503	9	3.6	9	95	0	55	25	9	21	43	1.82
29528216--29528382	26	6.3	26	84	2	208	34	11	25	29	1.91
29528368--29528426	27	2.2	27	78	0	64	40	15	23	20	1.90
29534715--29534866	76	2.0	76	92	0	250	32	10	18	38	1.85
29535500--29535532	13	2.4	14	90	10	50	48	0	3	48	1.17
29538418--29538493	29	2.5	31	82	4	93	25	11	14	48	1.77
29538421--29538493	31	2.4	29	81	4	83	26	12	13	47	1.78
29549702--29549732	8	3.9	8	91	0	53	51	12	0	35	1.40
29550977--29551008	9	3.6	9	95	0	55	25	9	21	43	1.82
29552691--29552858	26	6.4	26	86	2	219	33	11	25	29	1.92
29559187--29559280	47	2.0	47	100	0	188	27	12	12	46	1.78
29559967--29559998	15	2.1	16	94	5	57	53	0	3	43	1.16
29560119--29560226	52	2.1	52	87	0	153	34	5	17	42	1.73
29561848--29561885	15	2.5	15	87	8	51	60	2	0	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29563589--29563867	116	2.3	118	85	4	366	25	26	17	30	1.97
29563844--29564126	96	3.0	96	82	7	298	27	25	17	29	1.97
29563974--29564152	45	4.0	45	88	1	270	31	22	13	31	1.93
29564480--29564704	88	2.6	87	82	4	265	22	24	25	27	2.00
29564685--29564851	87	1.9	87	88	0	253	25	25	20	28	1.99
29564807--29565138	88	3.8	88	80	8	304	28	24	19	28	1.98
29564807--29565138	132	2.5	132	80	4	339	28	24	19	28	1.98
29564695--29565138	44	10.1	43	78	6	261	27	25	19	28	1.99
29567065--29567181	57	2.1	57	100	0	234	35	18	11	35	1.87
29571833--29571866	9	3.7	9	84	7	50	52	11	2	32	1.53
29571833--29571869	19	1.9	19	94	0	65	51	10	5	32	1.60
29571823--29571948	54	2.3	54	90	0	207	42	15	9	32	1.79
29571887--29571925	19	2.1	19	90	0	60	51	12	7	28	1.67
29575253--29575334	24	3.4	24	81	6	103	43	1	35	19	1.59
29578177--29578205	12	2.4	12	100	0	58	58	10	10	20	1.60
29589498--29589561	28	2.5	26	82	14	71	17	15	3	64	1.42
29594277--29594734	87	5.4	87	75	11	446	28	22	23	25	1.99
29594364--29594904	127	4.3	127	95	0	974	27	22	23	26	1.99
29594364--29594904	255	2.1	254	95	0	974	27	22	23	26	1.99
29601431--29601494	25	2.6	25	85	5	85	25	15	6	53	1.65
29602150--29602211	6	9.8	6	81	16	56	77	1	6	14	1.04
29603516--29603659	44	3.3	44	88	1	200	31	15	26	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29603885--29604066	50	3.7	49	73	11	172	32	19	23	24	1.97
29603891--29604102	100	2.1	99	85	6	277	34	18	20	25	1.96
29604194--29604811	44	14.5	43	71	12	391	30	22	21	26	1.98
29604099--29604836	125	5.8	129	89	2	1070	31	21	21	26	1.98
29606188--29606215	3	9.3	3	100	0	56	32	0	0	67	0.91
29606325--29606399	28	2.6	28	77	12	73	32	5	1	61	1.27
29608704--29608771	33	2.0	34	86	8	95	48	14	7	29	1.71
29610173--29610197	2	12.5	2	100	0	50	52	0	0	48	1.00
29610724--29610755	16	1.9	17	93	6	57	62	0	0	37	0.95
29620241--29620301	21	2.9	19	79	13	59	13	0	6	80	0.90
29620235--29620283	17	2.9	17	79	11	57	16	0	4	79	0.88
29623389--29623431	18	2.4	18	88	0	59	41	44	2	11	1.53
29623535--29623601	9	7.4	9	77	12	66	28	10	20	40	1.86
29623535--29623601	18	3.7	18	88	6	82	28	10	20	40	1.86
29623535--29623601	27	2.5	27	85	4	82	28	10	20	40	1.86
29625924--29625996	31	2.4	29	81	4	83	24	10	15	49	1.76
29626406--29626446	17	2.6	16	82	14	50	75	0	7	17	1.02
29626398--29626450	26	2.1	25	82	10	63	75	0	5	18	0.99
29626706--29626740	16	2.2	16	100	0	70	37	0	5	57	1.23
29640968--29641073	38	2.8	38	84	8	130	29	9	4	56	1.51
29644211--29644251	21	2.0	21	85	0	55	19	0	34	46	1.50
29644389--29644427	15	2.5	16	83	8	53	58	0	2	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29647384--29647552	20	8.6	20	71	13	120	47	6	5	40	1.52
29647395--29647586	57	3.3	57	89	2	276	46	6	5	41	1.52
29647476--29647714	94	2.6	91	79	10	265	44	7	5	42	1.55
29647568--29647783	57	3.6	58	74	14	188	43	9	4	42	1.55
29647625--29647730	37	3.1	35	75	23	116	45	11	2	40	1.55
29647563--29647798	124	1.9	124	85	6	327	44	9	4	41	1.57
29647820--29648151	9	39.3	9	66	18	153	45	20	2	31	1.64
29647817--29647944	26	4.9	26	79	5	159	44	20	0	34	1.57
29647797--29647964	79	2.1	79	96	0	309	44	21	0	33	1.57
29647860--29647897	16	2.4	16	90	0	58	44	23	0	31	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203