genome.fa.s17.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  19  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6074205--6074461	25	10.9	25	68	19	110	30	1	17	49	1.58
6074312--6074453	42	3.4	42	79	14	175	30	0	16	52	1.48
6074352--6074529	7	23.7	7	69	21	80	29	1	16	51	1.54
6074220--6074680	16	28.9	16	70	16	164	31	1	18	48	1.59
6074471--6074565	44	2.2	44	94	0	163	33	1	15	49	1.52
6074483--6074562	21	3.7	21	76	12	90	35	0	15	50	1.44
6074548--6074635	41	2.1	41	89	4	133	32	2	21	43	1.65
6074584--6074667	25	3.3	25	80	9	80	29	1	21	47	1.58
6074607--6074741	34	3.9	35	73	15	122	31	2	20	45	1.65
6074644--6074717	25	3.0	25	76	5	78	32	4	18	44	1.69
6074549--6074721	68	2.6	68	89	1	251	32	2	20	43	1.66
6074727--6074771	20	2.2	20	84	7	56	31	2	15	51	1.56
6075315--6075436	18	6.9	18	75	18	123	44	0	10	45	1.38
6075340--6075483	39	3.8	37	81	12	150	43	1	11	43	1.49
6076477--6076583	55	1.9	55	98	0	205	36	21	14	27	1.93
6077559--6077599	19	2.2	19	86	0	55	12	2	9	75	1.13
6078272--6078302	16	1.9	16	100	0	62	25	51	0	22	1.48
6078289--6078344	21	2.7	20	83	5	67	39	37	3	19	1.69
6078591--6078773	73	2.5	73	82	4	226	25	26	23	24	2.00
6078968--6079046	41	1.9	41	92	0	131	22	29	20	27	1.98
6078664--6079454	114	6.9	114	83	2	962	24	26	23	25	2.00
6078691--6079454	227	3.3	227	86	3	1007	24	26	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6078664--6079442	341	2.3	341	84	1	988	24	26	23	25	2.00
6079386--6079524	73	1.9	72	83	1	179	23	19	28	28	1.98
6084250--6084315	19	3.5	19	82	13	57	59	4	0	36	1.18
6084267--6084335	9	7.4	9	73	12	50	63	4	1	30	1.22
6084274--6084316	19	2.2	20	87	4	61	62	2	0	34	1.08
6084455--6084494	21	1.9	21	85	10	55	45	7	10	37	1.66
6087627--6087709	39	2.1	40	80	11	98	48	4	14	32	1.65
6087722--6087764	14	3.1	14	89	0	68	51	0	4	44	1.22
6088732--6088763	9	3.4	10	87	12	50	75	0	0	25	0.81
6088723--6088763	14	3.0	14	80	16	50	78	0	2	19	0.87
6089600--6089973	41	8.8	41	76	9	304	27	20	20	32	1.97
6089604--6089973	128	2.9	127	82	6	462	27	20	20	31	1.97
6089998--6090365	50	7.3	50	67	1	171	26	22	21	29	1.99
6090003--6090370	201	1.8	201	88	0	556	27	22	21	29	1.99
6090000--6090370	100	3.7	101	85	1	494	26	22	21	29	1.99
6090645--6090695	24	2.1	24	89	7	77	35	19	9	35	1.85
6091576--6091623	16	3.1	16	82	14	64	0	22	0	77	0.78
6091587--6091639	20	2.7	19	82	8	70	0	22	0	77	0.77
6091580--6091638	16	3.6	16	80	19	61	0	22	0	77	0.76
6091579--6091640	20	3.3	19	79	18	67	0	20	0	79	0.74
6096144--6096185	2	21.0	2	80	9	50	50	0	4	45	1.23
6096355--6096389	6	5.8	6	86	0	52	65	2	2	28	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6096355--6096389	9	3.9	9	84	0	52	65	2	2	28	1.21
6097458--6097485	14	2.0	14	100	0	56	7	21	50	21	1.72
6098618--6098736	48	2.4	50	85	4	152	40	0	34	24	1.61
6098659--6098691	16	2.1	16	94	0	57	45	0	27	27	1.54
6098618--6098752	48	2.8	47	82	6	139	41	0	33	24	1.60
6099328--6099370	19	2.3	19	88	8	61	32	4	0	62	1.15
6099327--6099370	10	4.7	9	81	18	54	31	4	0	63	1.14
6099327--6099370	9	4.6	10	77	11	56	31	4	0	63	1.14
6099665--6099733	20	3.6	19	81	12	63	36	2	1	59	1.21
6099683--6099739	9	6.1	9	80	12	62	35	1	0	63	1.05
6107174--6107234	6	10.2	6	79	10	54	13	4	4	77	1.10
6107259--6107295	3	12.3	3	94	0	65	29	2	0	67	1.04
6107495--6107539	18	2.3	21	78	17	53	26	8	0	64	1.23
6109444--6109492	20	2.7	17	77	17	53	69	4	4	22	1.23
6112696--6112887	63	3.0	63	92	0	303	34	16	14	34	1.89
6120279--6120356	31	2.4	34	85	6	99	37	3	6	52	1.45
6120640--6120681	23	1.9	23	85	9	61	33	19	4	42	1.72
6128184--6128640	227	2.0	227	98	0	887	41	23	12	22	1.88
6129794--6129832	20	2.0	20	84	0	51	41	7	20	30	1.80
6138002--6138047	23	2.0	23	95	0	83	36	17	21	23	1.94
6145010--6145051	21	2.0	21	85	0	57	23	2	7	66	1.28
6146806--6146831	7	3.7	7	100	0	52	15	0	15	69	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6146867--6146898	14	2.3	14	94	0	55	21	0	28	50	1.49
6147198--6147245	21	2.3	21	88	0	78	20	0	39	39	1.53
6147198--6147250	7	7.6	7	84	0	61	22	0	35	41	1.54
6147624--6148028	127	3.2	125	66	17	303	29	14	20	35	1.92
6147618--6148121	253	2.0	251	92	1	839	30	15	20	33	1.94
6149250--6149287	13	2.9	13	77	14	51	18	0	31	50	1.47
6149911--6149955	18	2.5	18	96	0	81	48	11	0	40	1.39
6149915--6149955	9	4.6	9	81	0	55	46	12	0	41	1.41
6149977--6150010	17	1.9	18	88	5	52	38	5	0	55	1.24
6150125--6150396	9	30.0	9	74	12	209	46	17	1	35	1.55
6150126--6150396	27	10.3	27	76	12	233	46	17	1	35	1.56
6152946--6153290	179	1.9	177	90	1	546	41	10	12	36	1.77
6167913--6167940	14	2.0	14	100	0	56	28	0	21	50	1.49
6168570--6168741	43	4.0	43	75	14	158	26	18	25	30	1.98
6187269--6187335	26	2.5	26	83	9	73	55	4	2	37	1.36
6188128--6188186	7	7.7	7	82	17	73	81	0	0	18	0.69
6188139--6188199	26	2.3	26	83	11	79	77	0	1	21	0.86
6188128--6188241	42	2.8	41	76	8	108	76	2	0	20	0.96
6188280--6188426	77	1.9	77	83	2	188	33	13	28	24	1.93
6194850--6194928	40	2.0	39	100	0	149	7	15	27	48	1.72
6212425--6213097	98	6.9	98	92	0	1033	31	23	21	22	1.98
6214469--6214578	3	36.7	3	100	0	220	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6214747--6214800	22	2.4	23	75	3	56	31	9	7	51	1.61
6216718--6216790	36	2.0	36	100	0	146	24	21	32	20	1.97
6216820--6216881	28	2.2	29	77	13	76	48	1	24	25	1.60
6231898--6231934	9	4.1	9	92	0	65	29	10	13	45	1.77
6235497--6235545	24	2.1	24	82	14	59	34	8	0	57	1.29
6239213--6239260	19	2.5	19	82	3	60	72	0	4	22	1.01
6246885--6246926	17	2.5	17	96	0	75	16	50	19	14	1.79
6246918--6246958	20	2.0	20	100	0	82	34	51	4	9	1.56
6246962--6247020	28	2.1	28	81	6	66	23	38	20	16	1.92
6247293--6247394	30	3.4	30	84	2	134	29	22	3	44	1.71
6247954--6248000	19	2.6	18	86	6	60	78	12	6	2	1.02
6247956--6247995	22	1.9	20	90	10	62	77	15	7	0	0.98
6247885--6248117	117	2.0	116	99	0	457	55	9	24	10	1.63
6248071--6248116	19	2.6	18	86	6	58	78	13	6	2	1.04
6248072--6248111	22	1.9	20	90	10	62	77	15	7	0	0.98
6248425--6248454	16	1.9	16	93	6	53	36	3	0	60	1.14
6254523--6254586	20	3.2	20	72	0	65	21	28	14	35	1.92
6264474--6264525	21	2.6	19	71	17	52	42	13	3	40	1.62
6264513--6264792	147	1.9	146	86	6	406	42	9	4	43	1.58
6265118--6265165	3	15.7	3	78	4	51	56	0	6	37	1.25
6274656--6274785	66	2.0	66	96	0	242	29	13	20	36	1.92
6296621--6296812	100	1.9	100	98	0	375	31	28	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6296884--6296951	29	2.3	29	85	5	93	27	30	13	27	1.94
6296773--6297100	174	1.9	174	98	0	638	31	24	14	29	1.95
6297053--6297131	29	2.7	30	82	13	110	29	30	15	25	1.96
6305325--6305378	17	3.2	17	75	0	54	9	12	3	74	1.20
6307737--6307775	12	2.9	13	85	14	53	15	10	2	71	1.23
6307741--6307775	12	2.6	14	91	8	56	11	8	2	77	1.10
6308038--6308115	21	3.4	23	74	8	70	26	3	30	38	1.74
6308074--6308135	21	2.9	21	82	2	79	30	3	32	33	1.74
6312344--6312397	17	3.2	17	75	0	54	9	12	3	74	1.20
6314611--6314649	12	2.9	13	85	14	53	15	10	2	71	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203