genome.fa.s17.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  99  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31322233--31322310	38	2.1	38	100	0	156	38	7	23	30	1.83
31325541--31326870	4	332.8	4	88	1	1777	44	24	4	26	1.74
31327378--31327420	21	2.0	21	95	0	77	16	18	37	27	1.92
31331647--31331678	15	2.1	15	94	0	55	15	6	9	68	1.36
31338550--31338604	23	2.4	23	87	0	83	23	18	21	36	1.95
31338594--31338646	21	2.5	21	78	0	61	20	28	22	28	1.99
31339778--31339831	18	3.0	18	75	8	56	42	3	3	50	1.38
31339778--31339852	11	6.8	11	71	24	52	42	2	2	52	1.29
31340050--31340103	18	3.0	18	75	8	56	42	3	3	50	1.38
31340050--31340124	11	6.8	11	71	24	52	42	2	2	52	1.29
31339669--31340212	272	2.0	272	100	0	1088	34	8	12	44	1.72
31341905--31342025	35	3.5	35	82	2	145	27	29	17	25	1.97
31348215--31348252	8	4.8	8	100	0	76	36	0	10	52	1.36
31348215--31348259	24	1.9	24	90	4	74	37	0	11	51	1.38
31349616--31349725	45	2.5	45	80	1	123	31	16	25	26	1.96
31352920--31353055	28	4.9	28	72	10	100	23	14	4	57	1.56
31352925--31353055	56	2.3	57	79	6	160	24	15	4	55	1.58
31354472--31354500	2	14.5	2	100	0	58	51	0	48	0	1.00
31354650--31354682	17	1.9	17	93	0	57	24	24	6	45	1.75
31357159--31357310	79	1.9	79	94	2	270	28	21	12	36	1.90
31357874--31357906	17	1.9	17	100	0	66	24	27	6	42	1.78
31358770--31358823	8	7.0	8	79	12	51	25	0	3	70	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31358772--31358828	30	2.0	29	86	6	80	24	0	3	71	1.01
31359098--31359129	12	2.6	13	85	14	50	28	0	0	71	0.86
31365481--31365544	31	2.1	31	82	5	76	50	14	14	21	1.78
31376061--31376138	5	15.6	5	75	17	65	41	1	2	55	1.22
31376102--31376143	8	5.0	8	83	11	57	42	0	0	57	0.99
31376096--31376147	18	3.1	17	86	8	70	42	0	0	57	0.98
31379396--31379555	30	5.3	30	89	1	216	26	49	3	20	1.65
31380113--31380171	25	2.4	25	85	0	82	35	3	0	61	1.13
31380102--31380173	25	2.7	26	76	8	74	36	4	1	58	1.26
31380115--31380179	16	4.1	17	75	18	68	35	3	0	61	1.12
31380195--31380280	25	3.6	25	80	7	83	31	6	5	55	1.50
31380197--31380287	23	3.9	24	75	11	73	32	6	5	54	1.49
31380413--31380460	16	3.1	15	87	6	60	29	2	4	64	1.23
31380413--31380464	8	6.5	8	78	8	52	28	1	3	65	1.21
31382135--31382508	73	5.0	71	74	14	302	29	15	21	33	1.94
31382208--31383775	160	9.8	158	93	2	2205	28	17	19	34	1.95
31383499--31383881	77	5.0	77	97	0	687	30	19	20	29	1.97
31384094--31384128	14	2.5	14	90	0	52	14	20	5	60	1.54
31384023--31384216	85	2.2	87	84	6	250	25	17	18	39	1.91
31384183--31384245	14	4.5	14	82	7	74	20	14	4	60	1.52
31384095--31384333	117	2.1	115	82	5	284	24	17	15	42	1.88
31385556--31385603	16	3.1	15	90	6	69	31	2	2	64	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31385556--31385607	8	6.5	8	82	8	61	30	1	1	65	1.14
31387215--31387245	15	2.1	15	100	0	62	38	25	6	29	1.81
31387575--31387692	43	2.8	43	83	6	150	31	27	15	25	1.95
31387544--31387701	42	3.7	42	79	5	149	30	25	13	29	1.94
31390009--31390047	3	13.0	3	100	0	78	66	0	33	0	0.92
31390529--31390571	16	2.8	16	89	3	61	32	2	0	65	1.06
31390529--31390585	15	3.6	16	83	9	64	33	1	0	64	1.04
31390643--31390680	18	2.2	18	90	4	60	21	0	2	76	0.91
31390914--31391012	19	5.4	17	73	12	63	37	4	1	57	1.24
31390921--31391010	35	2.4	36	76	14	85	38	4	0	56	1.19
31391007--31391075	21	3.5	19	81	13	77	42	8	0	49	1.34
31391082--31391129	25	1.9	25	95	0	87	35	0	4	60	1.16
31395585--31395628	18	2.4	18	85	7	54	61	0	6	31	1.22
31395615--31395658	21	2.1	21	83	8	54	61	0	0	38	0.96
31396060--31396094	16	2.1	17	89	5	54	40	0	5	54	1.24
31407779--31407813	5	7.4	5	93	6	56	62	0	0	37	0.95
31437819--31437868	23	2.2	23	100	0	100	8	8	32	52	1.60
31440906--31441079	78	2.3	78	91	2	280	58	8	6	27	1.51
31441825--31441918	9	10.4	9	85	0	125	42	24	8	24	1.82
31444060--31444100	16	2.6	16	80	0	55	65	4	0	29	1.13
31444095--31444739	103	6.2	103	87	7	939	54	15	0	28	1.47
31444815--31444921	52	2.0	53	94	1	189	53	14	0	31	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31445086--31445141	6	8.1	7	86	11	64	0	28	0	71	0.86
31445086--31445160	9	7.2	11	77	21	65	0	30	0	69	0.89
31445104--31445137	3	11.7	3	93	6	61	0	32	0	67	0.91
31445086--31445160	4	20.5	4	84	13	60	0	30	0	69	0.89
31450472--31450521	21	2.3	23	89	6	77	62	8	10	20	1.52
31460020--31460076	14	4.1	14	83	0	69	28	26	19	26	1.99
31460022--31460125	28	3.7	28	80	0	127	26	26	22	24	2.00
31460330--31460402	27	2.6	28	80	6	87	31	27	19	21	1.97
31477090--31477314	40	5.7	40	87	5	278	25	28	22	24	2.00
31477090--31477314	119	1.9	120	83	6	296	25	28	22	24	2.00
31485103--31485195	40	2.3	40	90	3	143	26	26	21	24	1.99
31485103--31485248	40	3.6	39	80	5	123	28	26	20	25	1.99
31486540--31487036	49	10.3	49	94	3	801	29	29	8	32	1.87
31490559--31490618	30	2.0	31	90	3	95	46	0	33	20	1.51
31490669--31490705	9	4.1	9	92	0	65	29	10	13	45	1.77
31490757--31490787	9	3.4	9	90	0	53	38	22	12	25	1.90
31495142--31495463	161	2.0	161	99	0	635	31	16	19	32	1.94
31496213--31496397	51	3.6	51	84	1	219	24	15	27	32	1.95
31528807--31528864	9	6.4	9	91	0	89	24	6	22	46	1.76
31532817--31532959	71	2.0	71	98	0	277	34	11	23	30	1.90
31533858--31533909	24	2.2	24	85	0	68	38	3	7	50	1.50
31537949--31537976	14	2.0	14	100	0	56	28	0	28	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31544563--31544656	35	2.7	34	79	11	111	45	31	3	19	1.66
31547733--31547777	20	2.3	19	84	3	63	48	6	0	44	1.29
31548463--31548521	19	3.1	19	65	4	55	50	10	10	28	1.68
31548896--31548957	19	3.2	19	81	4	88	27	9	22	40	1.85
31548896--31548977	39	2.1	39	84	8	105	28	8	23	40	1.83
31548927--31549038	20	5.7	20	75	5	102	28	9	16	44	1.80
31551527--31551657	41	3.3	41	75	9	137	32	25	16	25	1.96
31555947--31556207	132	2.0	132	93	0	450	24	15	27	31	1.96
31557431--31557518	39	2.3	38	88	5	131	32	21	5	39	1.77
31563616--31563650	18	1.9	18	88	11	54	22	2	0	74	0.95
31565501--31565548	20	2.3	21	85	7	62	45	8	6	39	1.59
31565498--31565550	22	2.4	21	77	22	56	47	7	5	39	1.56
31567072--31567130	31	1.9	31	82	6	75	37	8	10	44	1.69
31571533--31571580	21	2.2	23	82	14	57	33	12	0	54	1.38
31571586--31571636	3	17.0	3	87	0	75	31	3	1	62	1.24
31571595--31571636	15	2.8	15	100	0	84	33	4	0	61	1.17
31573082--31573108	4	6.8	4	100	0	54	25	0	22	51	1.48
31574203--31574227	13	1.9	13	100	0	50	72	4	0	24	1.02
31574421--31574492	26	2.8	26	87	6	103	13	5	37	43	1.68
31574790--31575574	100	7.8	100	91	0	1097	23	18	23	34	1.96
31574873--31575548	50	13.5	49	72	5	458	23	18	22	35	1.96
31576861--31576911	7	7.3	7	85	14	70	13	13	1	70	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31587535--31587566	16	2.0	16	93	0	55	15	25	28	31	1.96
31595962--31595996	16	2.2	16	94	0	61	17	14	22	45	1.84
31596848--31596882	16	2.2	16	94	0	61	17	14	22	45	1.84
31595205--31596976	886	2.0	886	100	0	3544	27	17	18	35	1.94
31600343--31600381	11	3.5	11	82	3	51	76	0	23	0	0.78
31600322--31600381	22	2.7	22	82	10	61	75	0	20	5	0.99
31601283--31601394	44	2.5	46	86	2	156	41	20	23	15	1.90
31601283--31601417	46	3.0	45	83	4	166	40	18	23	17	1.91
31602898--31603059	51	3.2	51	82	3	191	32	17	23	27	1.97
31602793--31603233	174	2.5	174	87	2	591	31	16	23	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203