genome.fa.s17.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  156  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49632994--49633062	9	7.4	9	72	19	54	42	1	2	53	1.24
49633192--49633222	9	3.3	9	91	8	53	67	0	0	32	0.91
49633193--49633222	10	3.1	10	90	9	53	70	0	0	30	0.88
49636631--49636867	122	2.0	121	86	4	334	50	4	8	36	1.53
49643888--49643968	25	3.2	25	76	0	90	34	23	22	19	1.96
49649658--49649842	94	2.0	94	96	0	343	37	15	16	31	1.89
49653323--49653387	11	5.8	12	82	10	75	26	29	1	43	1.64
49653349--49653446	51	1.9	51	83	8	128	27	22	3	46	1.66
49655698--49655813	45	2.6	45	88	2	180	36	0	12	50	1.45
49658304--49658719	125	3.3	125	84	3	595	31	22	17	28	1.96
49659398--49659474	28	2.7	28	77	15	70	57	1	2	38	1.21
49659684--49659853	9	17.3	9	68	18	65	32	4	1	61	1.24
49659712--49659828	10	11.7	10	68	17	57	30	5	0	63	1.18
49659684--49659853	19	8.6	19	70	13	96	32	4	1	61	1.24
49659684--49659851	30	5.7	28	72	17	108	32	4	1	61	1.24
49659744--49659824	31	2.7	29	83	11	92	30	4	0	64	1.15
49665526--49665581	3	19.0	3	92	3	96	1	32	0	66	1.03
49665940--49665973	11	3.1	11	91	0	59	61	8	0	29	1.26
49668206--49668261	28	2.0	28	82	0	67	32	10	25	32	1.90
49677974--49678012	16	2.4	16	100	0	78	46	0	12	41	1.42
49678131--49678165	18	2.0	17	88	5	52	45	0	0	54	0.99
49678322--49678418	44	2.2	44	85	5	124	36	26	4	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49680550--49680749	100	2.0	100	100	0	400	33	8	13	46	1.72
49693530--49693714	79	2.3	82	84	7	238	25	27	22	24	2.00
49693511--49693714	40	5.1	40	82	8	238	25	27	22	25	2.00
49698119--49698155	19	1.9	19	88	0	56	64	10	0	24	1.25
49703732--49703784	23	2.4	22	76	20	56	9	18	1	69	1.25
49709409--49709689	93	3.0	93	94	1	474	34	18	11	34	1.87
49710522--49710668	73	2.0	73	97	0	276	38	17	8	36	1.79
49714678--49714745	24	2.9	23	73	2	64	25	10	17	47	1.79
49719130--49719156	14	1.9	14	100	0	54	33	29	14	22	1.94
49722159--49722220	20	3.2	20	75	11	58	43	1	1	53	1.20
49727881--49727926	5	9.8	5	84	11	62	86	0	13	0	0.56
49727881--49727930	18	2.9	17	88	8	75	86	0	14	0	0.58
49733025--49733059	17	2.1	17	88	0	52	22	0	5	71	1.07
49734597--49734627	13	2.3	14	94	5	55	12	0	16	70	1.16
49741514--49741552	6	6.5	6	87	0	60	79	5	0	15	0.90
49746728--49746758	16	1.9	16	93	0	53	80	3	6	9	0.99
49749940--49750010	33	2.2	33	82	5	90	19	26	29	23	1.98
49753837--49753871	17	2.0	18	88	5	54	25	5	28	40	1.78
49753990--49754039	22	2.3	23	82	10	68	18	26	8	48	1.75
49756521--49756573	25	2.1	25	100	0	106	43	15	18	22	1.87
49763833--49763904	30	2.4	30	84	6	94	43	12	18	26	1.85
49765349--49765464	62	1.9	61	85	5	162	39	6	3	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49770981--49771109	45	2.9	45	85	2	179	25	20	12	41	1.87
49774480--49774532	6	8.8	6	100	0	106	16	0	33	49	1.47
49776273--49776317	23	1.9	24	81	4	56	53	15	11	20	1.72
49780675--49780741	2	33.5	2	100	0	134	50	0	49	0	1.00
49782158--49782283	55	2.3	56	78	9	150	37	0	37	24	1.61
49783364--49783446	24	3.5	22	75	15	69	54	0	1	44	1.08
49783397--49783474	40	1.9	41	84	7	106	55	0	0	44	0.99
49786673--49786710	2	19.0	2	100	0	76	0	50	0	50	1.00
49789509--49789555	20	2.4	20	76	16	53	65	2	0	31	1.04
49789746--49789795	24	2.1	24	85	10	68	36	0	2	62	1.07
49789746--49789795	23	2.1	23	85	10	66	36	0	2	62	1.07
49789826--49789994	59	2.7	59	80	17	152	44	8	5	40	1.60
49789983--49790024	16	2.6	16	92	0	66	42	7	2	47	1.43
49789998--49790053	23	2.5	23	82	2	69	44	1	1	51	1.22
49790778--49790841	6	10.7	6	85	9	62	12	4	1	81	0.92
49790778--49790840	15	4.3	15	80	9	60	12	4	1	80	0.93
49790778--49790842	21	3.1	20	74	24	62	12	4	1	81	0.91
49791959--49791991	17	2.0	17	88	5	50	18	12	3	66	1.36
49796306--49796692	193	2.0	193	97	0	738	28	15	24	31	1.96
49798656--49798728	36	2.0	36	97	0	137	23	15	19	42	1.88
49801664--49801776	50	2.3	50	81	6	122	33	15	21	29	1.94
49802396--49802449	19	2.8	19	77	0	54	66	3	1	27	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49802535--49802598	10	6.7	9	74	13	56	65	3	1	29	1.17
49802989--49803149	10	16.7	10	68	18	58	32	3	4	59	1.35
49803089--49803188	9	11.0	9	73	18	75	33	4	2	61	1.26
49803115--49803152	20	2.0	20	94	5	69	34	2	0	63	1.09
49804044--49804085	21	2.0	21	100	0	84	42	14	14	28	1.84
49807738--49807894	43	3.7	44	76	11	157	32	25	16	25	1.96
49807736--49807856	41	2.9	41	79	11	138	32	24	16	26	1.96
49808896--49809073	91	2.0	90	87	5	261	42	23	8	26	1.82
49817414--49817443	6	5.0	6	100	0	60	16	0	16	66	1.25
49817413--49817460	12	3.9	12	82	12	53	18	0	10	70	1.15
49817484--49817508	13	1.9	13	100	0	50	12	0	48	40	1.40
49819349--49819379	16	2.0	16	93	6	55	70	0	0	29	0.87
49821059--49821152	35	2.7	35	81	0	107	53	14	8	23	1.69
49821699--49821784	30	3.0	28	79	15	97	44	6	24	24	1.78
49821696--49821774	30	2.9	27	83	12	99	45	6	24	24	1.76
49829896--49830277	44	8.7	45	73	12	267	27	27	18	26	1.98
49829892--49830603	218	3.2	218	85	5	894	28	26	18	26	1.98
49830394--49830510	44	2.7	44	79	2	137	24	29	21	24	1.99
49832670--49832714	14	3.0	15	80	9	56	6	17	0	75	1.01
49840658--49840948	114	2.5	113	81	7	302	29	18	23	29	1.97
49841656--49841704	13	3.7	13	78	5	53	20	2	46	30	1.62
49841656--49841709	27	2.0	27	85	0	72	20	1	48	29	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49841673--49841711	20	2.0	20	89	0	60	15	5	51	28	1.64
49841877--49841947	7	9.9	7	79	10	56	16	0	43	39	1.48
49841855--49841942	28	3.1	28	79	6	97	18	1	43	37	1.57
49844685--49844734	17	3.2	17	78	21	72	36	6	6	52	1.51
49844703--49844730	13	2.2	13	100	0	56	39	7	7	46	1.59
49844726--49844764	16	2.5	15	88	8	60	41	0	5	53	1.23
49844696--49844844	62	2.4	61	81	4	174	36	5	10	47	1.61
49844917--49845060	31	4.6	31	70	19	118	48	11	3	36	1.56
49844881--49845074	95	2.0	95	95	0	352	45	11	4	39	1.59
49845074--49845291	9	24.7	9	79	9	220	47	16	3	33	1.62
49845074--49845254	27	6.7	27	95	1	294	48	15	2	33	1.60
49845075--49845282	27	7.8	27	90	6	293	47	15	3	33	1.63
49850790--49850831	21	2.0	21	95	0	75	35	14	40	9	1.78
49850086--49851613	778	2.0	745	88	5	2274	33	14	20	31	1.93
49851539--49851580	21	2.0	21	95	0	75	35	14	40	9	1.78
49851959--49852297	42	8.1	41	87	2	376	33	21	21	23	1.97
49851970--49852256	126	2.3	123	87	4	414	35	20	21	22	1.96
49855785--49855824	17	2.4	17	82	0	53	5	10	35	50	1.58
49856525--49856567	21	2.2	19	83	8	50	27	2	16	53	1.55
49862623--49862657	17	2.1	17	88	0	52	45	0	8	45	1.34
49864095--49864154	24	2.4	25	77	2	59	31	3	6	58	1.40
49865538--49865567	14	2.1	14	93	0	51	33	0	3	63	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49865563--49865596	10	3.4	10	88	12	52	20	0	0	79	0.73
49868596--49868649	16	3.4	16	82	10	74	40	1	29	27	1.67
49868862--49869112	120	2.0	123	89	9	384	51	4	1	41	1.34
49870502--49870605	49	2.1	49	92	3	174	50	9	6	33	1.62
49871445--49871531	29	3.0	29	100	0	174	24	20	17	37	1.93
49876607--49876667	18	3.4	18	75	4	61	36	22	11	29	1.90
49879985--49880073	34	2.8	32	81	14	123	26	15	8	48	1.75
49879985--49880075	28	3.0	30	85	11	114	26	16	8	48	1.75
49880265--49880318	19	2.7	21	91	5	85	35	9	14	40	1.78
49880659--49880694	3	12.0	3	87	0	54	30	2	2	63	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203