genome.fa.s17.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  174  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55319145--55319278	29	4.7	29	85	2	182	32	25	14	27	1.94
55322471--55322855	193	2.0	193	97	0	734	34	24	11	30	1.91
55323363--55323547	79	2.3	81	81	9	211	25	25	22	25	2.00
55323363--55323547	40	4.7	40	80	9	193	25	25	22	25	2.00
55324472--55324663	39	4.8	39	86	6	246	22	27	22	27	1.99
55335731--55335769	20	2.0	20	90	10	62	15	23	5	56	1.59
55335972--55336115	50	2.8	50	82	12	166	25	29	20	24	1.99
55338809--55338850	15	2.6	17	78	21	54	19	0	9	71	1.13
55341091--55341381	41	7.1	41	83	1	350	34	16	27	20	1.94
55341091--55341381	123	2.4	123	85	2	388	34	16	27	20	1.94
55341091--55341381	82	3.5	82	88	1	395	34	16	27	20	1.94
55346720--55346787	26	2.5	27	77	15	70	33	8	7	50	1.61
55346911--55347042	67	2.0	67	92	0	219	28	30	18	22	1.98
55351010--55351103	43	2.2	43	92	0	152	30	26	23	19	1.98
55362544--55362667	61	2.0	61	98	0	239	27	14	32	25	1.95
55366892--55367073	28	6.5	28	94	0	294	25	13	28	31	1.94
55375650--55375835	41	4.5	41	82	2	230	33	13	30	22	1.93
55375652--55375835	81	2.2	82	83	3	228	33	14	29	22	1.93
55375943--55376006	32	2.0	32	100	0	128	31	25	12	31	1.92
55378752--55378816	25	2.6	25	87	0	94	47	20	13	18	1.82
55412349--55412623	140	2.0	140	86	0	388	24	25	26	23	2.00
55419272--55419323	15	3.5	15	67	0	50	34	34	17	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55419568--55419600	13	2.5	13	90	9	50	51	24	3	21	1.62
55421764--55421791	13	2.2	13	100	0	56	25	14	7	53	1.66
55422890--55423086	98	2.0	98	95	0	358	38	24	9	27	1.86
55423032--55423969	205	4.6	205	99	0	1824	36	16	13	33	1.88
55424869--55425208	44	7.8	44	71	11	222	27	21	20	30	1.98
55424872--55425277	217	1.9	217	84	5	543	27	22	19	30	1.98
55425211--55425783	132	4.3	132	91	2	886	27	24	18	29	1.98
55429408--55429453	24	1.9	24	86	0	65	10	26	17	45	1.81
55431076--55432143	205	5.2	205	98	0	2016	36	17	13	32	1.89
55432481--55432657	58	3.2	53	71	15	155	49	3	10	35	1.56
55432482--55432700	112	1.9	113	84	4	291	50	5	9	34	1.59
55437258--55437312	13	4.2	13	85	0	65	54	10	3	30	1.52
55437754--55437802	18	2.7	18	100	0	98	63	0	0	36	0.95
55438603--55438640	20	1.9	20	94	0	67	44	18	21	15	1.86
55446878--55446917	10	3.8	10	81	12	53	37	0	5	57	1.21
55448085--55448117	7	4.7	7	100	0	66	12	12	15	60	1.59
55452669--55452708	20	2.0	20	90	0	62	50	12	10	27	1.72
55452657--55452723	34	1.9	35	90	3	109	46	13	8	31	1.74
55452692--55452731	14	2.9	14	84	0	53	42	17	7	32	1.77
55453771--55453828	20	2.8	20	75	17	57	43	5	1	50	1.35
55455288--55455337	11	4.5	11	78	7	57	24	30	2	44	1.65
55455288--55455337	22	2.3	22	89	6	75	24	30	2	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55455299--55455398	51	2.0	51	86	7	141	26	26	2	46	1.64
55457198--55457230	1	33.0	1	100	0	66	100	0	0	0	0.00
55460993--55461047	20	2.7	21	88	2	76	23	9	38	29	1.85
55464601--55464720	39	3.1	39	100	0	240	20	15	10	55	1.68
55465038--55465366	30	10.9	30	87	8	490	38	9	0	51	1.37
55465038--55465366	92	3.6	90	88	8	499	38	9	0	51	1.37
55465038--55465366	61	5.4	60	88	7	490	38	9	0	51	1.37
55465457--55465491	17	2.1	17	88	0	52	14	48	5	31	1.67
55465398--55465584	79	2.4	79	92	0	302	19	45	5	28	1.73
55465612--55465650	21	1.9	19	85	10	51	10	17	17	53	1.71
55467619--55467670	17	3.1	17	91	2	79	23	23	5	48	1.72
55471201--55471253	17	3.1	17	94	0	88	22	24	1	50	1.59
55472731--55472812	21	3.9	21	85	1	83	54	17	26	1	1.50
55476256--55476438	54	3.5	51	78	6	154	24	16	27	31	1.96
55486896--55486964	30	2.3	30	80	7	77	23	8	21	46	1.79
55486657--55486971	173	1.8	174	84	2	436	26	16	20	35	1.94
55490310--55490381	23	3.1	23	90	7	119	31	26	19	22	1.97
55507836--55507890	23	2.6	21	77	13	60	29	0	16	54	1.42
55511020--55511155	50	2.7	50	81	0	155	27	22	30	20	1.98
55511416--55511464	20	2.5	20	81	15	66	55	4	28	12	1.55
55524996--55525037	21	2.0	21	95	0	75	35	23	16	23	1.95
55527214--55527669	56	8.1	56	99	0	894	43	8	23	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55528798--55528982	40	4.7	40	79	7	191	24	22	27	26	2.00
55528851--55529015	79	2.1	79	82	6	192	26	20	26	26	1.99
55531471--55531535	32	2.0	32	87	0	94	30	23	27	18	1.97
55539282--55539402	40	3.0	40	98	0	233	20	23	16	39	1.92
55541547--55541767	40	5.6	40	89	2	304	21	28	24	26	1.99
55549341--55549443	40	2.6	39	79	8	111	20	26	24	29	1.99
55553392--55553440	20	2.3	20	82	10	53	32	8	14	44	1.74
55554191--55554231	11	3.6	11	87	6	64	73	7	4	14	1.22
55554190--55554245	12	4.7	12	86	6	78	73	7	5	14	1.23
55554190--55554245	13	4.5	13	85	14	75	73	7	5	14	1.23
55555157--55555213	11	5.5	10	74	15	53	78	1	15	3	0.96
55555146--55555211	21	3.1	20	79	14	62	78	3	15	3	0.99
55555157--55555213	5	11.0	5	78	10	53	78	1	15	3	0.96
55555161--55555209	26	1.9	25	84	12	64	79	2	14	4	0.97
55556900--55557037	40	3.5	40	87	3	190	23	23	26	26	2.00
55557411--55557588	89	2.0	89	100	0	356	24	22	21	31	1.98
55558561--55558585	12	2.1	12	100	0	50	76	0	16	8	1.02
55558561--55558642	30	2.7	31	81	5	105	64	1	21	12	1.33
55558773--55558811	19	2.1	19	100	0	78	20	30	15	33	1.94
55561979--55562076	27	3.5	28	90	2	135	26	13	28	31	1.94
55562007--55562089	27	3.0	27	87	5	96	30	12	25	32	1.92
55561979--55562090	28	4.0	27	83	6	98	28	12	25	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55572206--55572284	37	2.1	37	86	4	106	25	29	18	26	1.98
55572403--55572577	47	3.6	47	87	3	233	28	30	8	33	1.87
55575698--55575766	25	2.8	25	84	4	86	31	17	21	28	1.96
55576473--55576546	33	2.3	32	82	11	89	28	13	6	51	1.66
55576565--55576697	50	2.6	51	84	3	187	33	15	12	37	1.86
55586683--55586745	28	2.2	28	94	0	108	28	26	11	33	1.91
55588310--55588357	21	2.3	21	79	10	55	33	4	20	41	1.72
55590179--55590404	25	9.1	25	76	10	162	26	11	23	39	1.88
55590179--55590404	50	4.5	49	82	2	236	26	11	23	39	1.88
55590182--55590404	75	3.0	75	80	4	254	26	11	22	39	1.87
55592808--55592878	37	1.9	37	94	0	124	5	50	0	43	1.25
55600599--55600646	18	2.7	18	80	3	53	62	2	8	27	1.35
55601795--55601829	16	2.2	16	89	0	52	31	2	8	57	1.44
55602142--55602180	18	2.2	18	100	0	78	23	10	23	43	1.84
55603423--55603496	27	2.7	27	87	0	121	24	27	10	37	1.88
55605608--55605664	26	2.2	26	83	0	69	42	24	19	14	1.88
55605626--55605795	25	6.9	26	66	19	87	37	22	20	19	1.94
55616188--55616300	40	2.8	40	86	2	147	27	19	23	29	1.98
55619894--55619965	26	2.7	27	82	4	85	40	16	11	31	1.84
55619949--55620303	27	13.1	27	83	2	399	36	17	20	24	1.94
55619952--55620303	81	4.3	80	85	3	463	36	17	21	25	1.95
55620740--55620799	22	2.7	22	87	5	77	20	25	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55620958--55621037	26	3.0	26	81	3	88	18	23	18	38	1.93
55621155--55621248	6	15.3	6	73	16	77	19	19	13	47	1.82
55621158--55621227	25	2.8	25	91	0	113	18	21	14	45	1.84
55632715--55633995	47	27.1	47	97	0	2292	32	10	29	28	1.89
55634114--55634192	37	2.1	37	88	0	113	24	17	31	26	1.97
55636498--55636642	40	3.6	39	84	2	173	24	25	26	22	2.00
55639066--55639114	25	2.0	24	84	11	64	55	18	2	24	1.53
55640721--55640751	14	2.3	14	94	5	55	29	3	0	67	1.06
55642800--55642973	43	4.1	43	87	0	251	20	17	35	26	1.95
55643027--55643107	31	2.5	32	86	7	103	61	20	6	11	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203