genome.fa.s17.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  98  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31049192--31049226	11	3.3	11	92	4	54	62	0	0	37	0.95
31049228--31049279	19	2.7	19	82	8	61	55	0	13	30	1.38
31050241--31050280	19	2.2	18	95	4	71	25	12	0	62	1.30
31055284--31055325	13	3.4	13	74	12	52	0	21	0	78	0.75
31057017--31057064	13	3.7	13	83	5	62	35	2	27	35	1.69
31059492--31059525	13	2.7	13	90	4	52	41	2	0	55	1.15
31060523--31060561	20	2.0	20	84	0	51	46	12	10	30	1.75
31062172--31062223	20	2.5	20	81	3	68	42	13	1	42	1.55
31062239--31062288	25	2.0	25	81	11	59	46	2	0	52	1.12
31063839--31063868	15	2.0	15	93	0	51	73	10	6	10	1.25
31064147--31064333	92	2.0	92	91	2	304	19	15	15	49	1.79
31065524--31065587	34	1.9	34	83	3	85	32	6	12	48	1.66
31076711--31076743	12	2.8	12	90	9	50	66	6	0	27	1.15
31085178--31085242	22	3.0	22	82	14	82	23	30	0	46	1.53
31085179--31085245	11	6.2	10	85	11	71	23	29	0	46	1.53
31085182--31085245	33	1.9	33	84	12	87	25	29	0	45	1.54
31085242--31085298	29	2.0	29	92	0	96	40	1	3	54	1.28
31085242--31085308	29	2.4	29	87	7	95	38	1	2	56	1.24
31087095--31087137	18	2.4	18	92	0	68	16	27	11	44	1.82
31087379--31087430	21	2.5	22	90	6	81	36	36	19	7	1.80
31087743--31087823	38	2.1	38	97	0	153	43	1	8	46	1.42
31090874--31091416	251	2.2	251	88	1	802	27	21	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31090871--31091416	125	4.3	126	88	1	783	28	21	17	32	1.96
31092313--31092363	26	1.9	27	84	11	70	52	1	3	41	1.31
31092744--31092807	22	3.3	19	79	12	60	32	0	1	65	1.02
31093973--31094044	10	7.4	10	72	20	64	54	1	0	44	1.08
31093976--31094038	16	3.9	16	77	6	56	53	1	0	44	1.10
31093989--31094051	26	2.5	25	76	19	76	55	1	0	42	1.09
31093973--31094044	21	3.7	20	73	23	64	54	1	0	44	1.08
31093968--31094086	58	2.1	56	86	7	161	52	2	0	44	1.14
31094740--31094811	19	3.8	18	73	8	63	41	2	0	55	1.14
31094740--31094811	18	3.9	18	74	16	67	41	2	0	55	1.14
31107377--31107480	32	3.2	32	70	20	81	48	6	2	42	1.44
31107387--31107521	68	2.0	69	89	4	211	49	5	3	41	1.43
31107465--31107541	31	2.7	30	78	15	90	55	1	2	40	1.22
31107396--31107537	68	2.1	69	82	6	173	52	3	3	40	1.36
31109122--31109252	64	2.0	64	97	0	244	52	3	6	36	1.46
31109128--31109230	32	3.2	32	64	10	84	55	2	8	33	1.46
31109349--31109438	46	2.0	46	84	0	117	43	5	7	43	1.56
31118563--31118612	19	2.8	18	87	6	66	30	14	8	48	1.72
31118616--31118647	14	2.3	14	94	0	55	25	12	0	62	1.30
31120537--31120633	42	2.3	43	83	1	115	26	13	24	35	1.93
31126234--31126308	25	3.0	25	75	9	71	28	18	28	25	1.98
31126295--31126373	23	3.3	24	87	3	79	37	21	21	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31126314--31126373	23	2.5	24	94	2	104	38	23	20	18	1.93
31126390--31126452	25	2.5	26	82	5	76	33	19	28	19	1.96
31126809--31126850	21	2.0	21	85	0	57	42	23	0	33	1.55
31128468--31128662	92	2.1	92	98	0	372	42	16	11	29	1.83
31130310--31130369	20	3.0	20	73	9	59	35	1	1	61	1.16
31131400--31131457	19	3.2	17	79	16	64	24	25	0	50	1.50
31131406--31131436	16	1.9	16	93	0	53	25	29	0	45	1.54
31132376--31132413	10	3.7	10	86	6	58	57	0	0	42	0.98
31132498--31132530	17	1.9	17	93	0	57	51	0	0	48	1.00
31132698--31132844	43	3.4	44	82	4	167	31	25	18	24	1.97
31134945--31134981	17	2.2	17	95	0	65	32	24	13	29	1.93
31135171--31135264	33	2.8	33	98	0	179	43	5	21	29	1.74
31137329--31137361	14	2.3	15	94	5	59	36	33	0	30	1.58
31137761--31138112	41	8.7	41	80	4	358	31	22	21	24	1.98
31141667--31141951	36	7.7	36	66	14	123	32	18	23	24	1.97
31141656--31141994	76	4.5	76	83	5	379	32	19	23	24	1.97
31141668--31141938	149	1.8	149	86	3	393	32	18	23	24	1.97
31141841--31141991	40	3.9	40	71	15	127	33	19	24	23	1.97
31147971--31148079	45	2.6	43	80	10	127	33	5	29	31	1.80
31148224--31148258	18	2.0	17	88	5	52	54	0	0	45	0.99
31148239--31148426	61	3.1	61	70	14	199	48	6	1	42	1.39
31148323--31148374	15	3.6	15	80	12	56	53	1	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31148205--31148464	120	2.2	120	95	1	459	49	5	2	42	1.39
31167938--31168016	37	2.1	37	90	0	122	25	31	18	24	1.98
31168135--31168500	47	7.7	47	93	1	590	28	30	8	32	1.87
31172960--31173084	26	4.9	26	68	10	69	40	8	16	36	1.77
31177887--31177916	15	1.9	16	93	6	53	60	6	6	26	1.47
31178268--31178314	11	4.2	11	82	12	60	23	8	6	61	1.48
31178268--31178314	24	2.0	24	91	4	78	23	8	6	61	1.48
31187292--31187735	67	6.7	66	81	2	399	26	21	14	37	1.92
31187287--31187735	134	3.4	131	78	6	458	26	21	15	37	1.93
31190624--31190706	5	16.6	5	100	0	166	39	0	19	40	1.51
31193749--31193926	27	6.6	27	84	3	205	29	28	15	26	1.96
31193770--31193925	82	1.9	81	88	3	233	29	28	15	26	1.96
31194408--31194435	2	14.0	2	100	0	56	50	0	0	50	1.00
31205470--31205511	20	2.1	20	90	0	66	23	35	2	38	1.68
31209565--31209635	35	2.0	35	94	0	124	23	12	12	50	1.75
31233275--31233318	18	2.3	20	80	11	56	63	0	0	36	0.95
31233277--31233321	19	2.4	19	88	3	65	62	0	0	37	0.96
31233286--31233330	19	2.4	18	82	10	54	60	0	0	40	0.97
31233308--31233375	29	2.4	29	81	11	79	61	2	0	35	1.11
31233274--31233372	50	2.0	50	84	9	132	59	2	0	38	1.09
31235912--31235942	15	2.1	15	93	0	53	38	6	29	25	1.81
31236051--31236088	16	2.4	16	90	0	58	31	0	34	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31236067--31236176	45	2.6	43	77	9	120	34	5	28	31	1.80
31236330--31236505	54	3.1	51	67	25	136	49	4	1	44	1.33
31236305--31236835	120	4.5	120	85	9	772	50	4	2	41	1.38
31236421--31236472	15	3.6	15	80	12	56	53	1	0	44	1.11
31236541--31236592	15	3.6	15	80	12	56	53	1	0	44	1.11
31236577--31236632	24	2.4	24	79	11	62	50	7	3	39	1.47
31236491--31236709	106	2.1	105	90	5	345	49	5	3	41	1.43
31236590--31236830	121	2.0	123	86	4	337	50	4	4	40	1.42
31236382--31236833	227	2.0	226	92	3	748	50	4	3	41	1.40
31236789--31236835	18	2.8	18	78	12	55	57	0	0	42	0.98
31238275--31238329	12	4.1	12	75	24	56	58	9	32	0	1.30
31238279--31238334	17	3.5	17	79	18	75	62	8	28	0	1.25
31238277--31238334	30	1.9	30	96	0	107	62	8	29	0	1.25
31238321--31238352	5	6.4	5	96	0	55	78	3	18	0	0.89
31242855--31242885	15	2.1	15	100	0	62	38	6	32	22	1.80
31244113--31244145	17	1.9	17	88	11	50	39	12	6	42	1.67
31245893--31245967	37	2.0	37	92	0	123	44	14	5	36	1.68
31246097--31246174	38	2.0	39	95	2	140	17	2	28	51	1.59
31246155--31246209	13	3.9	13	82	17	74	14	0	45	40	1.45
31246159--31246219	18	3.8	17	73	24	60	16	0	44	39	1.48
31246155--31246219	30	2.1	31	94	2	114	16	0	43	40	1.49
31246300--31246358	30	2.0	30	96	0	109	27	28	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31246501--31246534	9	3.7	9	88	4	50	67	8	0	23	1.18
31249268--31249313	23	2.0	23	87	8	67	30	8	23	36	1.85
31265455--31265491	19	1.9	19	94	0	65	27	24	21	27	1.99
31272311--31272336	5	5.2	5	100	0	52	38	19	19	23	1.93
31272285--31272336	26	2.0	26	81	7	61	34	15	26	23	1.94
31274824--31274853	15	2.0	15	93	0	51	16	13	0	70	1.18
31292520--31292549	6	5.0	6	95	0	51	0	0	36	63	0.95
31292879--31293096	94	2.3	94	86	1	285	28	19	20	31	1.97
31311171--31311203	16	2.1	16	88	5	50	57	18	3	21	1.53
31316014--31316046	12	2.6	13	85	4	50	63	6	27	3	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203