genome.fa.s17.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  149  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47472585--47472753	54	3.1	54	91	1	259	32	13	13	40	1.83
47478645--47478921	50	5.5	50	79	5	274	28	22	28	20	1.99
47479421--47479577	50	3.1	50	82	0	188	28	21	28	21	1.99
47478765--47480076	656	2.0	656	100	0	2624	36	13	22	27	1.92
47483777--47483823	17	2.7	17	90	3	67	17	29	40	12	1.86
47486059--47486173	51	2.2	53	80	7	137	40	14	13	32	1.85
47490151--47490415	40	6.7	40	85	5	286	26	27	21	24	1.99
47490118--47490415	80	3.7	80	79	9	263	25	27	21	25	1.99
47490347--47490424	40	1.9	41	82	10	97	26	28	20	24	1.99
47498107--47498367	40	6.6	40	86	3	294	26	28	21	24	1.99
47498299--47498376	40	1.9	41	82	10	97	26	28	21	23	1.99
47499812--47500001	95	2.0	95	98	0	371	27	24	20	27	1.99
47501926--47502322	198	2.0	198	94	0	704	24	23	21	30	1.99
47506369--47506631	40	6.6	40	87	3	309	26	28	20	23	1.99
47514942--47515126	40	4.7	40	77	5	178	23	22	27	27	1.99
47514996--47515159	79	2.1	79	82	4	197	25	20	27	27	1.99
47520194--47520222	10	2.9	10	100	0	58	72	10	0	17	1.11
47520222--47520249	12	2.3	12	100	0	56	53	14	10	21	1.70
47523699--47523777	42	1.9	42	86	2	115	35	26	11	26	1.90
47523787--47523887	40	2.5	40	87	3	150	33	25	16	23	1.96
47524373--47524421	21	2.4	19	77	12	53	40	22	6	30	1.78
47525646--47525849	96	2.1	97	93	0	356	24	22	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47531196--47531258	28	2.3	27	86	7	92	31	7	14	46	1.73
47532868--47532957	27	3.3	27	88	0	126	28	14	18	37	1.91
47532868--47532999	54	2.4	54	80	1	129	27	16	18	37	1.92
47537435--47537620	93	2.0	93	98	0	363	31	6	15	46	1.71
47547923--47547969	20	2.3	20	96	0	85	61	2	6	29	1.32
47547924--47547982	20	2.7	22	76	15	68	66	1	3	28	1.18
47549709--47549901	98	2.0	98	94	0	341	35	24	11	28	1.90
47550960--47551011	25	2.1	25	100	0	104	26	19	11	42	1.85
47551407--47551478	19	3.8	19	83	3	101	36	15	11	37	1.83
47554631--47554703	29	2.4	31	75	4	78	36	17	12	32	1.87
47563705--47563770	32	2.0	34	88	5	100	57	0	3	39	1.14
47571894--47571959	29	2.3	29	81	2	71	42	18	15	24	1.88
47572378--47572494	35	3.4	34	71	12	112	28	5	13	52	1.64
47572968--47572999	14	2.3	14	100	0	64	56	0	37	6	1.25
47574749--47574791	16	2.5	17	85	7	52	39	0	2	58	1.11
47574758--47574791	17	1.9	17	88	5	50	44	0	0	55	0.99
47590056--47590080	3	8.3	3	100	0	50	64	0	0	36	0.94
47602182--47602210	15	1.9	15	100	0	58	27	0	20	51	1.47
47602651--47604643	995	2.0	994	90	2	3137	32	14	14	38	1.87
47605433--47605478	24	2.0	23	83	12	58	63	10	21	4	1.44
47606487--47606541	21	2.7	20	83	8	65	34	5	5	54	1.46
47611685--47611822	69	2.0	69	88	0	204	42	12	17	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47612663--47612710	25	1.9	25	87	8	71	31	14	18	35	1.91
47615661--47615748	31	2.9	30	75	5	88	40	14	11	32	1.82
47618210--47618263	24	2.3	22	76	17	54	27	0	5	66	1.13
47620398--47620433	18	2.1	18	89	5	56	50	19	0	30	1.48
47620409--47621187	28	29.1	27	77	16	652	47	23	0	29	1.52
47620386--47620473	23	3.8	23	77	14	101	45	26	0	28	1.54
47620482--47620622	23	5.5	24	77	16	115	48	22	0	29	1.51
47620641--47620834	23	7.8	23	81	14	192	45	24	0	29	1.53
47620485--47621195	212	3.3	212	96	1	1253	47	23	0	28	1.52
47620804--47620872	33	2.1	34	94	2	122	49	20	0	30	1.49
47620853--47621043	23	7.7	23	80	13	177	46	25	0	28	1.53
47624336--47624622	84	3.4	84	100	0	574	31	25	21	22	1.98
47624550--47624786	124	1.9	124	88	3	361	32	23	14	29	1.94
47624532--47624811	124	2.3	124	84	4	359	32	24	15	28	1.95
47633558--47633583	3	8.7	3	100	0	52	30	0	0	69	0.89
47634966--47635012	24	2.0	24	87	8	69	61	0	2	36	1.08
47636164--47636199	11	3.3	11	100	0	72	58	16	0	25	1.38
47637947--47638012	31	2.1	31	88	0	96	24	22	19	33	1.97
47646465--47647376	48	19.0	48	99	0	1779	32	27	10	29	1.90
47657499--47657578	24	3.3	24	87	0	106	52	6	2	38	1.40
47662371--47662569	43	4.6	43	88	3	285	33	27	16	22	1.95
47663259--47663289	4	7.8	4	100	0	62	51	22	0	25	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47665165--47665189	10	2.5	10	100	0	50	24	28	16	32	1.96
47669732--47669766	10	3.5	10	96	0	61	25	28	14	31	1.95
47671742--47671786	17	2.6	17	89	6	65	20	0	42	37	1.52
47672500--47672536	9	4.1	9	92	0	65	45	13	10	29	1.77
47672750--47672809	30	2.0	31	83	9	79	20	38	0	41	1.52
47675605--47675655	22	2.4	21	76	3	57	47	3	9	39	1.55
47675695--47675742	25	2.0	24	84	12	62	62	0	8	29	1.24
47675704--47675742	12	3.2	12	82	17	53	61	0	7	30	1.24
47678794--47678873	38	2.1	39	92	2	135	21	3	41	33	1.71
47681389--47681452	18	3.1	23	70	30	63	43	9	0	46	1.35
47681468--47681786	121	2.6	121	96	1	586	39	6	5	47	1.55
47681815--47681843	12	2.4	12	100	0	58	48	10	0	41	1.37
47681839--47682447	9	70.4	9	66	20	216	48	18	2	31	1.60
47681888--47682006	25	4.6	25	76	8	114	47	17	2	31	1.61
47682034--47682087	22	2.5	22	74	17	58	51	20	1	25	1.57
47682171--47682284	53	2.2	53	79	6	124	50	18	0	29	1.53
47682331--47682445	16	6.8	16	75	12	72	47	15	1	34	1.56
47681966--47682447	25	18.7	26	69	18	187	48	18	2	31	1.60
47682566--47682624	28	2.1	29	93	3	102	22	11	10	55	1.65
47684206--47684276	21	3.4	21	82	0	97	32	15	47	4	1.65
47684618--47684819	43	4.7	43	83	8	241	26	18	30	24	1.98
47684618--47684819	86	2.3	86	84	5	275	26	18	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47684788--47684860	33	2.2	33	82	4	85	20	19	32	27	1.97
47684932--47685086	73	2.1	73	89	0	238	24	23	23	29	1.99
47684986--47685768	114	6.9	114	93	1	1203	28	24	20	26	1.99
47688896--47688956	28	2.2	28	93	0	104	40	6	22	27	1.79
47704924--47704985	30	2.1	30	90	0	97	24	3	14	58	1.51
47709402--47709535	44	3.1	44	66	6	119	27	23	18	29	1.98
47709390--47709636	87	2.8	87	81	6	288	25	23	20	30	1.98
47709663--47709969	44	7.1	44	66	8	135	26	23	20	29	1.98
47709689--47709929	43	5.6	43	69	2	178	25	23	22	28	1.99
47709642--47709970	87	3.8	87	87	2	491	26	24	19	29	1.98
47709905--47710038	68	2.0	68	90	0	214	28	26	15	29	1.96
47710128--47710166	19	2.1	19	95	0	69	15	20	33	30	1.94
47710184--47711625	87	16.6	87	94	0	2296	24	22	22	29	1.99
47711575--47711764	88	2.2	88	87	3	276	28	21	19	30	1.98
47714065--47714115	16	3.2	16	78	15	54	1	11	3	82	0.89
47715189--47715253	24	2.6	25	82	9	78	56	6	15	21	1.60
47718289--47718322	18	1.9	18	88	5	52	50	0	5	44	1.26
47718438--47718473	13	2.8	13	86	0	54	72	2	2	22	1.11
47719315--47719399	41	2.1	41	90	0	134	30	14	32	22	1.93
47721472--47721564	37	2.4	39	85	7	118	52	3	1	43	1.24
47722639--47722683	15	3.0	15	86	0	63	26	0	6	66	1.16
47722646--47722696	20	2.7	19	85	11	61	27	0	7	64	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47723488--47723518	7	4.4	7	100	0	62	25	0	0	74	0.82
47729029--47729141	60	1.9	60	84	0	154	38	15	10	35	1.83
47729511--47729858	113	3.1	111	83	4	435	27	24	21	26	1.99
47729967--47730081	41	2.8	40	81	2	122	22	20	30	26	1.98
47732121--47732151	16	1.9	16	93	0	53	35	25	6	32	1.82
47734448--47734546	50	2.0	50	97	0	189	43	4	6	46	1.47
47734745--47734830	35	2.4	37	90	7	140	47	20	0	31	1.51
47734767--47734832	13	5.4	13	72	16	61	48	21	0	30	1.50
47734748--47734818	9	8.2	9	73	20	62	49	21	0	29	1.50
47734915--47735056	60	2.3	59	87	4	194	46	16	2	33	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203