genome.fa.s17.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  9  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3002695--3002962	81	3.3	81	86	5	382	19	17	21	41	1.90
3002695--3002962	27	9.9	27	85	7	325	19	17	21	41	1.90
3020825--3020867	23	1.9	22	86	13	61	39	25	4	30	1.76
3021139--3021365	39	5.8	39	81	5	233	31	16	30	21	1.96
3021139--3021365	79	2.9	78	79	5	242	31	16	30	21	1.96
3025896--3025943	13	3.7	12	81	13	51	35	0	20	43	1.52
3027602--3027750	74	2.0	74	98	0	289	31	21	19	27	1.97
3029997--3030238	50	4.7	50	77	4	200	28	21	26	23	1.99
3030431--3030469	20	2.0	20	90	10	62	56	5	23	15	1.59
3031816--3031970	41	3.8	40	81	5	170	47	2	14	35	1.58
3031852--3031914	13	4.7	13	74	14	56	55	1	12	30	1.47
3031871--3031926	28	2.0	28	85	0	76	48	1	14	35	1.54
3051462--3051524	33	1.9	33	90	3	101	39	4	20	34	1.74
3052214--3052242	14	2.1	14	100	0	58	17	13	13	55	1.70
3054259--3054481	79	2.8	78	83	7	272	24	27	22	25	2.00
3054259--3054481	39	5.7	40	87	6	280	24	27	22	25	2.00
3069981--3070011	16	1.9	16	93	0	53	48	9	6	35	1.62
3070160--3070264	20	5.2	20	83	6	115	38	1	5	54	1.35
3070192--3070258	20	3.4	20	95	2	118	35	2	8	52	1.48
3071334--3071371	18	2.1	19	90	5	60	18	0	0	81	0.69
3074594--3074830	23	10.3	23	84	3	282	45	18	14	21	1.85
3075186--3075225	20	2.0	20	95	0	71	45	17	5	32	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3079049--3079179	67	2.0	67	96	0	244	27	32	18	21	1.96
3098216--3098249	10	3.5	10	96	4	61	50	20	0	29	1.49
3098833--3099016	29	6.3	29	84	2	226	26	27	10	35	1.90
3098802--3098994	87	2.2	87	91	0	314	25	27	10	35	1.89
3098802--3099016	87	2.5	87	86	2	270	25	27	10	35	1.89
3110773--3110825	25	2.1	25	100	0	106	39	26	7	26	1.83
3114314--3114375	29	2.1	29	87	0	88	37	11	11	40	1.77
3115763--3115847	37	2.4	37	86	7	113	42	20	12	24	1.87
3118729--3118761	16	2.1	16	100	0	66	24	0	21	54	1.45
3125112--3126013	451	2.0	451	98	0	1752	37	15	12	34	1.86
3131338--3131369	14	2.3	14	100	0	64	31	46	15	6	1.71
3136463--3136494	14	2.3	14	100	0	64	31	46	15	6	1.71
3140023--3140128	28	3.9	27	76	7	97	40	11	20	27	1.87
3140139--3140197	28	2.1	29	87	3	84	38	20	16	23	1.92
3141329--3141441	45	2.5	45	86	0	163	21	23	12	42	1.87
3146204--3146297	47	2.0	47	91	0	152	40	24	7	27	1.82
3149004--3149074	17	4.0	17	72	15	63	53	5	4	36	1.44
3149157--3149190	18	1.9	18	88	5	52	47	0	26	26	1.53
3149977--3150020	15	3.0	14	80	9	52	11	6	2	79	1.01
3152182--3152211	6	5.2	6	92	8	53	83	0	16	0	0.65
3152182--3152211	11	2.6	11	94	5	51	83	0	16	0	0.65
3153626--3153701	31	2.5	30	81	10	82	55	2	6	35	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3153732--3153763	16	2.0	16	93	0	55	46	0	0	53	1.00
3154544--3154617	30	2.5	28	81	14	85	45	9	1	43	1.44
3155875--3155911	16	2.3	16	90	9	58	27	5	16	51	1.66
3163483--3163573	25	3.7	25	82	7	98	27	25	19	27	1.99
3163528--3163590	24	2.6	24	79	2	63	30	23	19	26	1.98
3164354--3164395	20	2.2	20	87	12	61	57	4	21	16	1.58
3172899--3173076	29	6.1	29	75	5	137	21	26	16	35	1.94
3172992--3173162	58	3.0	57	81	6	193	24	23	13	38	1.91
3173006--3173164	29	5.5	29	72	14	132	25	21	12	40	1.88
3180215--3180254	15	2.8	14	81	7	53	62	5	2	30	1.29
3182864--3182903	18	2.2	18	100	0	80	42	0	15	42	1.46
3185401--3185578	51	3.5	48	80	5	185	24	17	26	30	1.97
3185502--3185582	26	3.2	26	65	28	73	23	14	28	33	1.94
3185806--3185837	16	2.0	16	93	0	55	59	0	15	25	1.36
3189740--3189806	27	2.5	27	87	0	89	22	28	13	35	1.92
3189884--3189954	25	2.7	26	82	8	90	22	22	15	39	1.92
3192139--3192487	174	2.0	174	99	0	689	42	22	4	30	1.72
3194623--3194760	50	2.8	48	77	8	143	22	27	21	28	1.99
3204978--3205202	40	5.7	40	87	5	305	24	22	27	25	2.00
3204978--3205235	119	2.2	119	82	6	301	25	21	27	25	2.00
3220536--3220571	17	2.1	17	89	0	54	25	16	25	33	1.96
3226627--3226883	129	2.0	129	96	0	469	27	13	19	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3227570--3227874	46	6.6	46	86	3	380	26	23	21	28	1.99
3241243--3241278	17	2.1	17	100	0	72	11	5	33	50	1.61
3245382--3245480	27	3.6	26	78	11	101	34	17	20	28	1.95
3245527--3245698	88	2.0	88	92	0	290	37	4	26	31	1.77
3249670--3249710	21	2.0	21	85	9	57	46	7	2	43	1.44
3249919--3249967	25	2.0	25	100	0	98	26	16	8	48	1.73
3252010--3252055	20	2.3	20	84	0	56	54	4	0	41	1.20
3254790--3254832	18	2.3	18	80	11	52	65	6	4	23	1.37
3263439--3263584	28	5.2	28	76	8	109	32	13	23	30	1.93
3274898--3274957	30	1.9	32	83	6	79	46	1	3	48	1.28
3274884--3274957	35	2.2	33	77	15	80	48	1	2	47	1.24
3275917--3276018	40	2.7	38	80	13	120	24	19	27	28	1.99
3278628--3278652	13	1.9	13	100	0	50	36	0	0	64	0.94
3285177--3285221	18	2.5	18	92	0	72	40	8	20	31	1.83
3293804--3293848	17	2.8	16	80	12	56	15	0	2	82	0.77
3296741--3297134	196	2.0	196	91	0	644	30	13	25	30	1.94
3304734--3305052	158	2.0	158	95	0	575	28	21	9	40	1.85
3307888--3307938	23	2.2	23	89	0	75	31	7	19	41	1.80
3307888--3307946	23	2.6	23	83	0	55	32	10	16	40	1.82
3312705--3312777	36	2.0	36	100	0	146	31	0	10	57	1.33
3324802--3324987	50	3.7	50	80	5	200	22	26	22	27	1.99
3341094--3341215	43	2.8	43	75	11	115	32	24	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3343742--3344045	152	2.0	152	96	0	554	37	22	10	29	1.87
3348354--3348394	22	1.9	22	85	5	57	51	24	2	21	1.60
3350337--3350390	27	2.0	28	82	10	67	40	11	0	48	1.39
3354939--3355014	39	1.9	39	100	0	152	30	30	18	21	1.97
3355632--3355852	41	5.3	41	75	9	178	24	18	19	37	1.94
3355626--3355860	84	2.8	82	79	3	238	24	18	20	36	1.95
3355724--3355851	40	3.1	40	78	7	130	23	19	21	35	1.96
3361379--3361404	11	2.4	11	100	0	52	0	42	7	50	1.31
3361762--3361804	21	2.0	21	81	0	50	58	6	0	34	1.25
3366832--3366874	21	2.0	21	82	8	52	23	20	4	51	1.66
3368112--3368137	11	2.4	11	100	0	52	0	42	7	50	1.31
3368495--3368537	21	2.0	21	81	0	50	58	6	0	34	1.25
3374962--3375295	51	6.6	51	76	9	310	28	14	26	30	1.95
3374957--3375298	102	3.4	101	81	8	394	28	15	26	30	1.96
3381783--3381833	25	2.0	25	100	0	102	39	15	3	41	1.66
3382170--3382232	32	2.0	32	83	0	81	44	6	6	42	1.55
3391831--3391971	50	2.8	51	83	1	167	41	20	27	10	1.85
3393177--3394010	44	18.9	44	70	9	473	31	18	20	29	1.96
3393355--3393954	85	6.8	85	73	10	288	32	18	19	29	1.95
3393560--3393877	96	3.4	95	74	12	311	33	15	20	30	1.94
3393479--3393958	181	2.7	181	86	1	667	32	17	20	30	1.95
3397808--3397836	5	5.8	5	100	0	58	79	0	0	20	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3411634--3411736	51	2.0	51	98	0	197	29	15	20	34	1.93
3414339--3414466	46	2.8	45	89	2	175	28	25	10	35	1.89
3421188--3421315	46	2.8	46	87	0	175	28	25	10	35	1.90
3422745--3422769	13	1.9	13	100	0	50	80	0	4	16	0.87
3426058--3426160	50	2.2	49	82	8	124	33	3	8	54	1.50
3426086--3426196	48	2.3	50	80	7	122	35	3	8	53	1.48
3426375--3426804	82	5.4	82	85	4	522	29	11	11	47	1.74
3426375--3426752	159	2.3	162	86	4	523	30	11	10	46	1.74
3429615--3429675	32	1.9	32	86	0	86	27	6	9	55	1.57
3436234--3436290	17	3.4	16	76	9	51	71	3	5	19	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203