genome.fa.s17.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  135  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43027123--43027390	137	2.0	137	87	1	394	30	26	22	20	1.99
43030473--43030553	41	2.0	41	95	0	144	14	23	19	41	1.89
43030631--43030664	4	9.0	4	87	12	54	47	0	0	52	1.00
43030812--43030837	4	6.5	4	100	0	52	46	0	0	53	1.00
43039015--43039571	40	13.9	40	97	0	1042	24	29	20	25	1.99
43048967--43048992	9	2.9	9	100	0	52	34	19	0	46	1.50
43052416--43052473	25	2.3	25	96	0	107	44	13	12	29	1.80
43053340--43053379	17	2.3	18	87	12	66	42	10	0	47	1.37
43057911--43058020	32	3.5	32	81	6	118	25	10	16	48	1.77
43057952--43058020	29	2.2	32	82	10	81	24	11	17	46	1.81
43059255--43059297	18	2.6	16	72	13	50	62	4	16	16	1.48
43060358--43060388	12	2.5	13	89	10	55	67	0	19	12	1.22
43061884--43061998	23	4.9	23	77	6	106	39	22	11	26	1.88
43062956--43063082	43	3.0	42	74	13	132	33	26	18	22	1.96
43064465--43064511	23	2.0	23	84	8	60	44	10	4	40	1.59
43077336--43077479	15	9.7	15	70	15	59	24	20	27	28	1.99
43077715--43077769	23	2.5	21	77	11	56	34	20	16	29	1.94
43077725--43077768	23	1.9	23	85	0	61	38	20	13	27	1.90
43079132--43079177	21	2.2	21	96	0	83	50	4	17	28	1.65
43084905--43084945	20	2.0	20	90	0	64	34	24	14	26	1.94
43086817--43086985	50	3.4	50	82	8	193	29	23	26	20	1.99
43087255--43087293	12	3.2	12	85	0	51	51	5	23	20	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43087256--43087299	20	2.2	20	87	0	61	52	4	25	18	1.64
43088687--43088880	50	3.9	49	81	2	208	28	23	26	21	1.99
43102285--43102327	5	8.0	5	80	14	50	18	4	0	76	0.95
43102281--43102315	17	2.0	18	88	5	54	22	0	0	77	0.78
43102285--43102327	11	4.0	10	80	16	50	18	4	0	76	0.95
43102825--43102862	18	2.1	18	95	0	67	31	23	5	39	1.77
43111688--43111818	46	2.8	46	89	0	208	43	17	17	21	1.88
43112988--43113375	41	9.5	41	83	1	481	21	18	27	31	1.97
43112988--43113375	163	2.4	165	85	0	528	21	18	27	31	1.97
43112989--43113445	163	2.8	163	82	2	477	22	19	26	31	1.98
43113620--43113768	14	10.4	14	70	12	88	19	1	30	48	1.57
43113683--43113732	15	3.4	15	81	10	59	20	0	30	50	1.49
43113683--43113768	29	3.0	29	75	12	79	18	0	32	48	1.48
43113620--43113768	7	20.9	7	71	9	68	19	1	30	48	1.57
43114000--43114139	7	19.6	7	74	8	95	19	0	32	47	1.54
43114000--43114135	29	4.8	29	72	10	111	19	0	33	47	1.55
43114048--43114138	36	2.5	37	83	3	114	17	0	31	50	1.46
43114775--43114837	20	3.1	20	77	11	74	50	0	4	44	1.23
43114778--43114837	10	5.8	10	78	11	59	48	0	5	46	1.24
43115666--43115695	13	2.3	13	94	0	51	23	16	20	40	1.91
43116160--43116190	13	2.5	12	90	10	53	35	22	6	35	1.80
43116160--43116224	26	2.5	25	75	2	58	41	21	7	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43119456--43119695	43	5.6	43	83	4	254	24	16	26	32	1.96
43119517--43119695	85	2.1	87	87	2	254	25	18	26	29	1.98
43119517--43119715	85	2.3	86	82	1	220	27	19	25	28	1.98
43119862--43119906	20	2.2	20	100	0	90	51	4	24	20	1.66
43121400--43121575	9	18.8	9	68	23	89	32	1	2	63	1.17
43121462--43121511	21	2.4	22	84	15	63	42	0	2	56	1.11
43121482--43121574	28	3.3	27	76	13	89	38	2	1	58	1.17
43121474--43121574	19	5.3	18	75	18	82	37	1	0	59	1.15
43122148--43122203	22	2.5	22	91	0	94	51	5	3	39	1.42
43128690--43128761	37	1.9	37	100	0	144	30	19	19	30	1.96
43129259--43129336	27	2.8	26	76	5	66	32	29	19	19	1.96
43156481--43156554	38	1.9	38	86	5	105	31	18	25	24	1.98
43156497--43156863	184	2.0	184	97	1	691	27	18	26	27	1.98
43156787--43156953	40	4.2	40	88	0	226	23	22	28	25	2.00
43162833--43163229	40	9.9	40	96	0	713	25	20	28	24	1.99
43172616--43172800	79	2.3	82	83	7	229	24	27	22	24	2.00
43172597--43172800	40	5.1	40	81	8	229	24	27	22	25	2.00
43185408--43185739	67	5.0	67	81	3	357	34	15	24	26	1.95
43185376--43185739	134	2.7	133	77	5	394	33	15	25	25	1.95
43187504--43187681	27	6.6	27	84	3	205	29	28	15	26	1.96
43187525--43187680	82	1.9	81	88	3	233	29	28	15	26	1.96
43195827--43196036	28	7.5	28	92	1	334	31	28	14	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43195827--43196036	56	3.8	56	96	1	370	31	28	14	25	1.94
43200509--43200651	72	2.0	72	83	2	180	30	13	11	44	1.80
43202398--43202429	3	10.7	3	100	0	64	0	31	0	68	0.90
43203680--43203721	20	2.0	21	90	4	68	28	0	14	57	1.38
43206186--43206224	18	2.2	18	100	0	78	25	28	5	41	1.77
43206491--43206810	28	11.4	28	80	5	317	35	22	16	25	1.95
43222276--43222364	38	2.3	39	81	13	103	31	20	23	24	1.98
43225041--43225129	38	2.3	39	81	13	103	31	20	23	24	1.98
43227985--43228037	27	2.0	27	96	0	97	33	22	15	28	1.94
43229475--43229515	21	2.0	21	90	4	66	14	24	34	26	1.94
43229481--43229523	20	2.1	21	83	12	54	23	20	32	23	1.98
43229930--43229982	15	3.4	16	82	7	65	30	13	15	41	1.85
43230122--43230161	18	2.2	19	86	4	55	30	15	2	52	1.55
43235833--43236094	39	6.7	40	88	7	337	24	27	22	25	2.00
43247782--43247818	18	2.0	19	89	5	58	51	0	43	5	1.24
43248690--43248751	22	2.8	22	69	13	56	12	3	46	37	1.58
43250376--43250472	35	2.8	35	80	0	113	40	14	17	27	1.89
43254511--43254577	31	2.1	32	81	13	77	26	11	29	31	1.92
43268562--43268605	22	2.0	22	90	0	70	22	36	4	36	1.75
43269414--43269447	16	2.1	17	88	5	52	50	0	5	44	1.26
43271111--43271179	35	1.9	37	85	8	99	27	0	7	65	1.19
43271525--43271560	18	1.9	19	94	5	65	52	0	2	44	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43271609--43271634	13	2.0	13	100	0	52	69	0	7	23	1.14
43271865--43271973	10	11.4	10	70	15	61	28	4	0	66	1.18
43271851--43271957	29	3.8	28	79	7	99	30	4	0	63	1.21
43271814--43271961	57	2.5	58	76	10	149	31	6	1	60	1.31
43271876--43271973	39	2.5	40	80	6	110	28	5	1	65	1.20
43271886--43271973	19	4.5	19	84	7	97	28	4	1	65	1.19
43272016--43272055	20	2.0	20	95	0	71	47	5	0	47	1.24
43272058--43272260	89	2.3	87	81	9	241	32	8	21	37	1.84
43273586--43273669	32	2.6	33	71	5	82	44	4	2	48	1.36
43276795--43276838	22	2.0	22	86	0	61	43	2	0	54	1.12
43278614--43278657	22	2.0	22	95	0	79	43	18	20	18	1.89
43280060--43280119	23	2.6	22	69	7	57	66	8	10	15	1.43
43281917--43282100	96	1.9	96	90	0	296	29	27	26	17	1.97
43287170--43287202	16	2.1	16	94	0	57	21	0	0	78	0.75
43287482--43287508	3	9.0	3	100	0	54	66	0	0	33	0.92
43288001--43288029	13	2.2	13	100	0	58	48	13	0	37	1.43
43288449--43288592	49	3.1	49	61	24	121	43	4	22	29	1.74
43288452--43288644	89	2.2	89	100	0	386	42	3	22	31	1.69
43290255--43290295	19	2.2	19	86	0	55	24	34	26	14	1.94
43292249--43292357	33	3.3	33	89	5	175	42	33	9	15	1.79
43298156--43298388	114	2.0	114	94	0	403	30	21	15	33	1.93
43299327--43299375	25	1.9	27	84	12	68	34	12	16	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43303497--43303552	25	2.4	22	78	16	67	23	12	48	16	1.80
43303503--43303556	25	2.2	25	93	0	90	22	12	48	16	1.80
43305053--43305191	27	5.2	26	87	5	172	39	16	15	28	1.89
43305053--43305191	54	2.6	54	86	3	192	39	16	15	28	1.89
43309585--43309618	17	1.9	18	88	5	52	26	11	8	52	1.67
43318429--43318636	27	7.7	27	85	6	237	20	18	18	42	1.89
43318429--43318636	54	3.9	54	87	5	278	20	18	18	42	1.89
43325432--43325632	27	7.5	27	82	1	226	17	18	19	44	1.87
43325432--43325632	54	3.8	54	87	2	271	17	18	19	44	1.87
43325432--43325628	107	1.8	107	90	0	313	17	17	19	45	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203