genome.fa.s17.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  144  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45793768--45793814	19	2.3	21	89	10	71	21	0	14	63	1.30
45793784--45793825	16	2.8	15	89	10	68	21	0	11	66	1.23
45793812--45793877	20	3.1	21	80	4	62	22	3	7	66	1.31
45795834--45795892	31	1.9	31	89	0	91	37	11	11	38	1.79
45797820--45797866	17	2.9	17	84	9	55	70	8	0	21	1.14
45797839--45797871	5	6.6	5	86	13	50	81	0	0	18	0.68
45797840--45797872	14	2.3	15	94	5	59	78	0	0	21	0.75
45801484--45801534	23	2.2	23	82	6	59	52	9	0	37	1.34
45809123--45809157	18	2.0	17	88	5	52	45	0	0	54	0.99
45809069--45809534	120	3.9	120	99	0	914	44	1	5	48	1.37
45809243--45809277	18	2.0	17	88	5	52	45	0	0	54	0.99
45809363--45809397	18	2.0	17	88	5	52	45	0	0	54	0.99
45809483--45809517	18	2.0	17	88	5	52	45	0	0	54	0.99
45809682--45809772	45	2.0	45	85	2	121	37	28	6	27	1.82
45809753--45809821	16	4.2	16	92	3	120	36	37	1	24	1.65
45809753--45809821	33	2.1	32	94	2	120	36	37	1	24	1.65
45809876--45809926	26	2.0	26	88	0	75	5	19	31	43	1.75
45811653--45811688	5	7.0	5	87	6	54	22	0	2	75	0.94
45811663--45811695	16	2.1	16	88	5	50	27	0	6	66	1.15
45812550--45812619	30	2.4	30	83	7	90	21	17	11	50	1.77
45812552--45812609	30	1.9	30	89	6	91	22	18	12	46	1.82
45812736--45812769	17	2.1	17	88	5	52	0	20	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45813577--45813601	5	5.0	5	100	0	50	40	20	20	20	1.92
45814865--45814924	30	2.0	31	86	3	86	40	0	40	20	1.52
45815139--45815175	9	4.1	9	92	0	65	29	10	13	45	1.77
45820021--45820079	23	2.5	24	81	15	61	72	3	20	3	1.13
45820886--45821070	100	1.9	100	89	0	289	25	25	19	29	1.98
45821268--45821758	88	5.6	88	92	0	725	24	25	20	28	1.99
45823084--45823132	8	6.2	8	77	13	57	12	0	10	77	0.99
45823083--45823146	14	4.4	14	81	14	76	14	0	10	75	1.06
45823091--45823138	25	2.0	25	88	12	73	10	0	10	79	0.95
45823084--45823147	6	9.6	7	77	19	50	12	0	10	76	1.02
45823829--45823855	12	2.2	12	100	0	54	70	7	7	14	1.32
45823920--45823985	25	2.6	25	83	9	71	56	6	18	19	1.62
45826385--45826419	16	2.2	16	89	0	52	42	20	14	22	1.88
45827412--45828436	511	2.0	512	98	0	1989	47	7	10	34	1.67
45828554--45828601	17	2.9	16	81	15	53	60	0	6	33	1.22
45838891--45838951	26	2.3	26	82	0	77	29	11	14	44	1.81
45846621--45846660	6	6.7	6	91	0	62	20	25	0	55	1.44
45848550--45848613	29	2.2	29	86	2	94	35	23	12	28	1.91
45848674--45848724	26	2.0	26	88	0	75	35	19	17	27	1.94
45853693--45853763	35	2.0	35	94	0	124	30	7	29	32	1.84
45863912--45864415	126	4.0	126	95	0	909	29	17	17	36	1.93
45870165--45870206	21	2.0	21	100	0	84	42	0	19	38	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45870388--45870429	21	2.0	21	90	0	66	71	21	2	4	1.16
45871447--45871479	17	2.1	17	88	11	52	36	0	9	54	1.32
45876203--45876384	97	1.9	97	91	2	303	32	9	22	34	1.87
45878921--45879076	73	2.1	74	90	1	242	21	25	10	41	1.86
45880452--45880786	29	11.5	29	79	5	311	38	13	25	22	1.90
45882858--45882925	32	2.1	32	86	0	91	45	7	5	41	1.56
45888352--45888457	29	3.6	29	77	2	95	26	14	19	39	1.90
45894143--45894184	21	2.0	21	85	0	57	30	9	4	54	1.53
45895577--45895734	57	2.8	56	92	1	262	31	8	16	43	1.78
45899233--45899261	13	2.2	13	100	0	58	44	0	6	48	1.29
45899198--45899335	56	2.5	56	87	0	195	32	7	14	44	1.74
45908286--45908350	34	1.9	34	96	0	121	24	20	4	50	1.66
45922606--45922631	12	2.2	12	100	0	52	30	26	15	26	1.96
45925197--45925258	29	2.1	31	81	6	74	30	9	4	54	1.54
45925434--45925492	24	2.4	24	85	2	82	62	0	0	37	0.95
45925509--45926289	391	2.0	386	98	1	1499	36	12	18	32	1.89
45936827--45936857	9	3.4	9	95	0	53	35	16	9	38	1.81
45938108--45938148	21	2.0	21	85	0	55	41	9	12	36	1.76
45938198--45938256	19	3.1	19	90	4	91	50	8	1	38	1.43
45938244--45938272	14	2.1	14	100	0	58	51	13	0	34	1.42
45938523--45938561	16	2.6	15	88	11	62	53	0	0	46	1.00
45942856--45942895	12	3.3	12	89	6	55	72	0	2	25	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45942858--45942904	21	2.2	21	85	14	62	74	0	4	21	0.99
45945740--45946919	591	2.0	591	99	0	2351	27	17	15	39	1.90
45954316--45954348	13	2.5	13	95	5	57	66	9	6	18	1.40
45954569--45954642	37	2.0	37	97	0	139	27	22	8	41	1.82
45965744--45965798	26	2.1	26	89	0	83	23	10	12	52	1.71
45966491--45966652	46	3.6	46	95	2	285	32	15	23	28	1.95
45968166--45968223	28	2.1	28	90	0	89	44	15	8	31	1.76
45968416--45968494	33	2.4	33	89	0	113	20	36	27	15	1.92
45970352--45970392	18	2.2	19	91	4	66	46	0	0	53	1.00
45970346--45970395	26	1.9	26	84	8	66	44	0	0	56	0.99
45987392--45987467	38	2.0	38	100	0	152	39	15	5	39	1.70
45988210--45988238	15	1.9	15	100	0	58	20	10	27	41	1.85
45992928--45993095	40	4.2	40	82	8	148	27	27	20	24	1.99
45992963--45993148	80	2.3	80	83	9	229	27	27	20	23	1.99
45992965--45993148	40	4.6	40	83	7	205	27	27	21	23	1.99
45993944--45994132	88	2.1	88	97	0	351	34	23	17	24	1.96
46001251--46001438	51	3.7	50	82	3	207	30	27	17	25	1.97
46011799--46011846	17	2.7	18	80	6	62	25	4	0	70	1.04
46021647--46021690	23	1.9	23	85	0	61	50	0	9	40	1.34
46031934--46032045	43	2.6	43	91	0	170	34	20	4	40	1.73
46041507--46041538	16	2.0	16	100	0	64	25	25	18	31	1.98
46042855--46042923	29	2.4	29	85	0	84	37	15	13	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46042877--46042936	29	2.1	29	90	0	93	26	16	25	31	1.96
46046829--46047093	29	9.1	29	77	0	235	27	16	19	36	1.93
46051344--46051370	7	3.9	7	100	0	54	25	44	0	29	1.54
46054131--46054162	15	2.2	14	94	5	55	75	3	0	21	0.95
46055246--46055286	20	2.0	22	85	9	59	63	9	4	21	1.44
46058708--46058743	16	2.2	16	90	0	54	2	22	0	75	0.94
46064672--46064849	27	6.6	27	84	3	205	29	28	15	26	1.96
46064693--46064848	82	1.9	81	88	3	233	29	28	15	26	1.96
46066841--46066906	33	2.0	33	93	0	114	31	22	13	31	1.93
46067542--46067575	15	2.3	15	89	0	50	35	29	17	17	1.93
46079421--46081059	820	2.0	820	96	0	2999	29	13	16	39	1.87
46086662--46086925	27	9.8	27	77	6	205	42	7	25	24	1.81
46088340--46088428	46	1.9	46	84	4	117	30	20	20	29	1.97
46100598--46100652	16	3.4	16	71	14	58	49	3	0	47	1.19
46100672--46100744	32	2.3	30	80	13	76	60	0	6	32	1.23
46101593--46101670	20	4.0	19	73	15	70	16	1	19	62	1.39
46101593--46101664	19	3.6	20	80	14	78	16	1	19	62	1.40
46104678--46104763	30	2.8	32	89	7	140	31	9	11	47	1.71
46105700--46105774	37	2.0	37	100	0	150	26	16	16	41	1.88
46110470--46110510	20	2.0	20	85	0	55	29	9	7	53	1.60
46116425--46116466	17	2.5	17	81	11	52	57	26	0	16	1.40
46118929--46118992	30	2.2	29	83	8	76	39	0	3	57	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46125343--46125368	8	3.2	8	100	0	52	23	0	0	76	0.78
46125125--46125676	274	2.0	274	98	0	1077	34	18	7	38	1.79
46125617--46125642	8	3.2	8	100	0	52	23	0	0	76	0.78
46125705--46125797	39	2.5	37	84	7	107	25	30	24	19	1.98
46129201--46129314	39	2.9	39	82	0	129	33	6	21	38	1.79
46129737--46129824	39	2.2	40	78	9	101	34	5	22	37	1.78
46130859--46130888	13	2.3	13	94	0	51	66	23	10	0	1.21
46136155--46136219	28	2.4	28	84	7	80	81	7	1	9	0.93
46136154--46136230	34	2.3	34	91	6	122	79	9	2	9	1.03
46136154--46136248	40	2.4	38	85	5	118	77	7	5	9	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203