genome.fa.s17.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  167  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52882549--52882712	82	2.0	83	87	1	240	22	20	22	34	1.97
52883094--52883125	15	2.1	16	94	5	57	12	3	12	71	1.25
52890539--52890593	23	2.4	23	76	14	60	54	7	0	38	1.28
52891028--52891107	22	3.8	22	77	9	85	27	1	22	48	1.58
52891016--52891107	41	2.2	41	84	5	114	28	1	22	47	1.58
52891056--52891106	19	2.5	19	79	17	50	29	1	25	43	1.66
52891241--52891296	30	1.9	28	85	7	76	39	5	19	35	1.75
52892245--52892362	59	2.0	58	86	1	164	25	23	25	24	1.99
52893049--52893090	15	2.8	15	75	13	50	30	0	19	50	1.48
52898728--52898856	28	4.5	27	75	16	116	37	0	17	44	1.48
52898728--52898814	33	2.9	31	83	11	101	42	0	13	43	1.44
52898942--52899622	126	5.4	126	89	1	949	38	16	16	28	1.90
52899690--52899780	25	3.6	25	89	2	130	50	3	19	26	1.63
52901215--52901357	50	2.8	50	81	1	178	20	30	23	25	1.98
52902930--52902966	14	2.6	14	95	0	65	32	2	5	59	1.34
52904330--52904372	18	2.4	18	92	0	68	41	9	27	20	1.83
52911310--52911335	12	2.2	12	100	0	52	53	15	7	23	1.67
52916879--52917184	125	2.4	125	89	0	477	34	17	18	28	1.95
52920204--52920376	56	3.1	56	70	15	185	39	6	9	43	1.65
52920185--52920398	112	1.9	112	95	0	383	39	7	8	43	1.65
52920467--52920677	42	4.9	42	90	5	334	25	0	30	44	1.54
52920467--52920677	22	9.9	22	90	5	335	25	0	30	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52921931--52921956	7	3.7	7	100	0	52	57	15	0	26	1.38
52923103--52923200	51	1.9	51	85	4	135	50	1	23	25	1.56
52923757--52923832	9	8.4	9	86	5	100	43	23	7	25	1.80
52923757--52923832	27	2.8	27	88	7	118	43	23	7	25	1.80
52923939--52923982	18	2.4	18	88	0	61	13	2	43	40	1.57
52925386--52925414	4	7.5	4	92	7	51	51	0	0	48	1.00
52930531--52930575	20	2.2	20	84	7	56	51	11	6	31	1.63
52930541--52930585	20	2.3	19	85	7	63	44	13	13	28	1.81
52930970--52931003	17	1.9	17	88	5	50	47	14	5	32	1.69
52932075--52932104	14	2.2	13	94	5	51	50	0	0	50	1.00
52933996--52934029	5	6.8	5	100	0	68	38	0	0	61	0.96
52934072--52934113	16	2.5	17	84	3	59	61	2	2	33	1.21
52942074--52942108	6	5.8	6	96	0	61	34	0	45	20	1.51
52943252--52943306	27	2.1	27	89	3	85	32	12	1	52	1.50
52946215--52946259	22	2.0	22	86	0	63	64	17	11	6	1.46
52949870--52949913	21	2.1	21	86	0	61	22	29	6	40	1.80
52950143--52950195	27	2.0	26	92	0	79	15	30	15	37	1.88
52952405--52952464	16	3.8	16	76	12	54	45	0	1	53	1.10
52952414--52952455	15	2.9	15	82	10	52	47	0	0	52	1.00
52952675--52952742	16	4.2	16	96	0	127	38	35	0	26	1.57
52954495--52954563	24	2.8	25	77	18	83	52	10	4	33	1.55
52955382--52955406	13	1.9	13	100	0	50	80	0	20	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52955666--52955697	15	2.1	15	94	0	55	12	15	56	15	1.68
52961362--52961408	20	2.3	20	85	0	58	29	2	2	65	1.15
52967498--52967529	16	2.0	16	100	0	64	37	18	37	6	1.76
52967817--52967863	19	2.5	19	86	6	60	25	17	10	46	1.79
52974967--52975056	47	1.9	47	88	0	135	46	16	21	15	1.84
52976442--52976608	45	3.6	45	75	14	146	33	17	21	26	1.96
52976448--52976639	44	4.2	44	75	12	122	33	17	21	27	1.95
52976699--52976793	45	2.1	45	82	3	111	35	15	18	29	1.93
52978572--52978618	20	2.3	20	85	0	58	29	2	2	65	1.15
52979014--52979114	33	3.0	33	71	8	114	39	13	12	33	1.83
52979014--52979145	67	2.0	67	96	0	246	40	14	12	31	1.84
52983558--52983678	64	1.9	64	87	3	181	22	19	21	37	1.95
52986025--52986135	40	2.8	40	83	6	118	25	16	22	36	1.94
52986025--52986155	41	3.2	39	82	8	136	26	16	22	35	1.94
52986865--52987058	23	8.4	23	81	1	228	30	12	15	41	1.84
52994339--52994519	57	3.2	56	86	2	247	47	15	16	20	1.82
52994339--52994542	57	3.6	57	80	5	236	46	15	16	22	1.84
52994835--52994898	23	2.8	23	90	0	101	32	12	15	39	1.85
53001206--53001265	25	2.4	25	86	10	95	53	8	15	23	1.68
53002677--53002767	44	2.1	44	87	0	128	48	13	10	27	1.75
53002955--53002980	7	3.7	7	100	0	52	38	0	0	61	0.96
53003647--53003725	26	3.0	27	81	9	99	41	0	15	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53004780--53004925	68	2.1	68	89	0	229	32	17	15	34	1.91
53017271--53017314	18	2.4	18	84	3	52	36	2	2	59	1.23
53032458--53032488	4	7.8	4	100	0	62	25	0	22	51	1.48
53033999--53034036	16	2.4	16	90	0	58	52	2	0	44	1.14
53034966--53035035	28	2.5	28	76	2	79	38	22	15	22	1.92
53035850--53035892	23	1.9	22	95	4	77	2	25	0	72	0.97
53036023--53036069	7	6.7	7	95	0	85	0	29	0	70	0.88
53036450--53036474	7	3.6	7	100	0	50	28	12	0	60	1.32
53047870--53047927	26	2.2	26	93	0	98	48	8	8	34	1.65
53048214--53048238	2	12.5	2	100	0	50	48	0	0	52	1.00
53048239--53048378	38	3.7	38	98	0	262	44	3	7	45	1.48
53049736--53049812	32	2.4	32	82	0	100	45	6	23	24	1.76
53049821--53049907	39	2.3	39	86	5	117	39	14	13	32	1.86
53054224--53054300	32	2.4	32	82	0	100	46	6	22	24	1.75
53054309--53054395	36	2.3	38	86	5	115	37	14	14	32	1.88
53054497--53054547	21	2.4	21	80	6	59	15	13	1	68	1.30
53059346--53059463	59	2.0	59	95	3	211	38	15	13	33	1.86
53069941--53069995	25	2.2	25	93	0	92	43	16	7	32	1.75
53079562--53079608	18	2.4	18	82	10	58	34	2	0	63	1.06
53086486--53086678	36	5.3	35	85	5	181	17	12	29	39	1.87
53088863--53088983	61	2.0	62	80	8	140	38	8	15	38	1.78
53097570--53097615	22	2.1	21	84	11	58	69	2	4	23	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53099049--53099097	26	1.9	26	87	4	73	40	2	0	57	1.10
53099231--53099265	18	2.0	17	88	5	52	20	5	0	74	1.02
53104413--53104448	12	3.1	11	85	14	54	77	0	22	0	0.76
53119084--53119304	111	2.0	110	93	2	381	40	14	14	30	1.86
53119663--53119698	18	2.0	18	94	0	63	25	16	13	44	1.85
53129181--53129222	22	1.9	22	85	0	57	54	2	2	40	1.26
53129283--53129323	21	1.9	21	85	5	55	53	0	2	43	1.13
53130614--53130638	13	1.9	13	100	0	50	48	16	0	36	1.46
53131132--53131184	27	1.9	28	84	3	72	66	1	1	30	1.13
53131132--53131194	27	2.3	27	81	5	65	66	1	1	30	1.10
53134439--53134476	19	2.0	19	94	0	67	36	5	13	44	1.66
53141261--53141504	50	4.9	50	87	0	344	21	31	20	25	1.98
53148053--53148138	21	4.1	21	68	20	56	63	3	0	32	1.11
53148100--53148143	19	2.3	19	80	11	54	70	0	0	29	0.88
53151364--53151483	51	2.4	51	98	0	231	31	14	25	28	1.94
53151459--53151503	7	6.4	7	92	0	63	42	6	28	22	1.79
53151459--53151503	14	3.2	14	93	0	72	42	6	28	22	1.79
53151454--53151503	21	2.4	21	93	0	82	40	8	28	24	1.83
53151403--53151554	71	2.1	72	93	1	261	34	12	25	27	1.92
53151475--53151604	50	2.6	50	95	0	224	36	11	23	28	1.90
53158043--53158113	20	3.5	20	79	9	81	45	22	22	9	1.82
53168001--53168131	41	3.2	41	81	4	122	29	25	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53170387--53170428	19	2.3	19	83	4	50	19	11	9	59	1.59
53171475--53171563	25	3.6	25	84	0	106	29	19	31	20	1.97
53174749--53174779	15	2.1	15	93	0	53	12	19	45	22	1.84
53175432--53175748	45	7.1	45	77	6	329	27	25	18	28	1.98
53181087--53181126	14	2.7	16	77	18	50	2	30	5	62	1.29
53187374--53187403	10	3.0	10	100	0	60	80	0	20	0	0.72
53204431--53204493	21	3.0	21	75	6	58	34	25	20	19	1.96
53205444--53205492	3	16.7	3	79	12	57	59	2	0	38	1.09
53205444--53205492	13	3.4	14	81	18	64	59	2	0	38	1.09
53205446--53205493	16	3.1	16	74	20	57	58	2	0	39	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203