genome.fa.s17.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  102  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32322495--32322527	13	2.6	13	95	4	59	12	0	48	39	1.40
32340166--32340204	10	4.1	9	86	6	51	35	0	2	61	1.10
32341186--32341220	17	2.1	17	88	0	52	31	2	11	54	1.51
32346683--32346772	25	3.6	25	80	4	101	26	18	22	32	1.97
32354816--32355064	124	2.0	124	93	0	426	31	17	16	34	1.93
32358933--32359018	22	3.7	22	72	17	66	25	29	16	29	1.97
32360757--32360906	20	7.5	20	75	8	144	34	16	33	16	1.91
32360746--32360982	40	5.9	40	86	0	312	37	16	29	16	1.91
32360774--32360922	20	7.4	20	76	8	151	36	16	30	16	1.91
32378537--32378658	37	3.2	37	64	19	95	36	9	13	39	1.79
32378518--32378676	79	2.0	79	98	0	309	37	8	12	41	1.74
32378899--32378937	10	3.8	10	83	6	51	38	0	2	58	1.12
32393288--32393345	30	1.9	30	89	0	89	41	3	24	31	1.71
32393557--32393588	13	2.5	13	94	0	55	31	0	12	56	1.37
32393683--32393924	50	4.7	50	87	3	304	26	23	29	19	1.98
32393683--32393932	100	2.4	103	88	5	371	26	23	29	20	1.99
32401882--32401924	15	2.9	15	80	19	54	39	6	9	44	1.64
32408309--32408364	28	2.0	28	82	3	67	39	16	5	39	1.71
32408125--32408775	125	5.2	126	84	2	790	28	18	13	39	1.89
32408127--32408775	251	2.6	251	85	2	849	28	18	13	39	1.88
32408877--32408981	50	2.1	50	82	7	133	42	26	0	29	1.62
32409729--32409911	56	3.2	56	67	14	167	45	6	3	44	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32409641--32409981	114	2.9	114	93	3	547	43	6	4	44	1.51
32409785--32409969	58	3.2	58	66	14	166	42	5	5	45	1.51
32411636--32411695	31	1.9	31	100	0	120	48	13	15	23	1.79
32415067--32415220	53	2.9	53	83	1	159	29	25	9	35	1.88
32420803--32420845	20	2.2	20	100	0	86	30	16	25	27	1.97
32421230--32421307	34	2.3	34	90	0	120	37	12	24	25	1.91
32422521--32422751	23	10.0	23	72	12	168	42	18	12	26	1.85
32422495--32422782	93	3.1	93	93	0	495	42	17	12	27	1.85
32422553--32422798	46	5.3	45	68	12	167	40	17	14	27	1.89
32423521--32423647	28	4.5	28	89	0	182	30	26	11	30	1.92
32429534--32429592	31	1.9	31	82	6	75	33	3	16	45	1.64
32434383--32434428	22	2.0	23	87	4	67	34	0	2	63	1.07
32446794--32446910	42	2.8	42	81	10	123	30	25	19	23	1.98
32451159--32451191	10	3.1	11	86	8	50	15	9	0	75	1.03
32452156--32452213	16	3.6	15	72	22	55	75	8	1	13	1.10
32459716--32459805	31	3.0	31	75	12	89	41	12	8	37	1.74
32461046--32461084	19	2.0	20	85	5	53	51	5	15	28	1.64
32465277--32465331	23	2.4	23	87	6	76	47	12	18	21	1.82
32469332--32469391	27	2.2	27	85	5	77	31	20	16	31	1.95
32474189--32474243	27	2.1	26	86	3	74	60	5	3	30	1.37
32476364--32476696	87	3.8	87	91	1	490	24	24	21	29	1.99
32476413--32476637	43	5.2	43	61	18	115	23	22	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32478313--32478349	7	5.4	7	96	3	67	0	13	0	86	0.57
32478313--32478355	13	3.2	13	90	6	68	2	13	0	83	0.74
32478339--32478435	34	2.8	34	92	4	149	9	13	7	70	1.34
32478433--32478465	12	2.8	12	86	4	50	6	0	21	72	1.05
32482961--32483015	27	2.1	26	86	3	74	60	5	3	30	1.37
32490981--32491016	15	2.5	14	86	8	54	44	8	0	47	1.33
32491485--32491513	13	2.2	13	100	0	58	13	6	10	68	1.37
32498226--32498273	9	5.3	9	74	0	51	45	0	29	25	1.53
32508055--32508429	184	2.0	186	91	2	612	38	15	9	37	1.79
32508849--32508885	18	2.1	18	100	0	74	16	5	16	62	1.51
32510925--32510952	13	2.2	13	100	0	56	50	0	17	32	1.47
32512375--32512442	27	2.5	27	82	0	100	44	10	4	41	1.58
32517593--32517632	20	2.0	20	85	0	53	30	7	20	42	1.79
32529227--32529253	2	13.5	2	100	0	54	0	48	0	51	1.00
32529253--32529282	2	15.0	2	92	0	51	53	0	0	46	1.00
32529821--32529850	16	1.9	15	93	6	51	63	10	13	13	1.52
32544385--32544511	59	2.1	60	91	4	204	22	12	16	48	1.79
32546014--32546106	46	2.0	46	100	0	186	43	12	17	26	1.85
32547722--32547781	31	1.9	31	96	0	111	51	13	5	30	1.62
32548234--32548261	13	2.2	13	100	0	56	32	21	39	7	1.80
32549425--32549508	42	2.0	42	95	0	150	48	13	8	29	1.71
32551050--32551089	19	2.2	18	90	4	62	45	12	2	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32552080--32552129	3	16.7	3	100	0	100	34	0	0	66	0.92
32561091--32561485	44	9.0	44	77	5	368	29	16	25	29	1.96
32561091--32561485	88	4.5	90	79	4	446	29	16	25	29	1.96
32561076--32561485	132	3.1	132	93	1	696	30	16	25	28	1.96
32561477--32561708	88	2.6	88	86	1	295	30	27	21	21	1.98
32561708--32562208	44	11.7	44	80	8	444	29	16	24	29	1.97
32561724--32562186	126	3.6	125	83	7	431	30	16	23	29	1.97
32561720--32562161	170	2.6	170	89	1	654	30	16	23	28	1.97
32562560--32562658	44	2.2	44	81	0	117	30	23	18	28	1.97
32562690--32562851	45	3.6	45	76	2	148	29	20	24	24	1.99
32574035--32574081	22	2.2	20	85	14	60	53	0	2	44	1.12
32576390--32576426	9	4.1	9	86	13	58	32	10	10	45	1.74
32576480--32576510	9	3.4	9	90	0	53	38	22	12	25	1.90
32582130--32583635	753	2.0	753	100	0	3012	29	17	20	32	1.95
32583139--32584530	696	2.0	696	98	0	2714	30	15	17	36	1.91
32584663--32584722	30	2.0	30	93	0	102	26	3	13	56	1.52
32584820--32584857	11	3.3	12	85	10	53	63	0	0	36	0.95
32590411--32590517	48	2.2	48	81	3	126	31	19	14	34	1.91
32591881--32591914	10	3.6	9	88	11	50	73	2	2	20	1.09
32592085--32592145	4	14.5	4	75	21	54	70	0	4	24	1.07
32592078--32592145	17	4.2	15	77	20	66	70	0	4	25	1.05
32593739--32593939	44	4.4	45	72	10	129	29	22	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32593861--32593960	44	2.2	44	78	5	103	30	19	18	33	1.95
32605312--32605376	4	15.8	4	73	23	55	70	0	4	24	1.06
32605316--32605376	17	3.7	15	76	21	59	70	0	4	24	1.07
32609664--32609689	13	2.0	13	100	0	52	7	15	15	61	1.55
32613218--32613261	22	2.0	22	82	8	54	54	2	0	43	1.12
32613223--32613278	23	2.3	26	76	14	66	46	1	0	51	1.11
32613362--32613408	14	3.3	14	83	13	60	38	0	2	59	1.09
32618424--32618467	14	2.8	16	86	10	56	63	4	0	31	1.14
32638142--32638238	41	2.6	35	79	17	115	29	18	11	40	1.86
32643250--32643317	26	2.6	26	95	0	118	30	23	25	20	1.98
32645623--32645667	16	2.8	17	80	12	51	26	4	0	68	1.08
32645633--32645675	12	3.7	11	81	9	50	23	4	0	72	1.04
32645625--32645680	24	2.3	23	82	14	60	25	5	0	69	1.09
32645641--32645679	12	3.2	12	85	7	53	17	7	0	74	1.05
32648395--32648433	21	1.9	20	84	5	51	46	7	7	38	1.61
32648417--32648533	61	1.9	61	87	3	173	52	4	0	42	1.27
32648481--32648546	17	4.1	17	73	7	50	51	3	0	45	1.16
32668494--32668532	19	2.1	19	95	0	69	0	46	10	43	1.37
32672163--32672371	91	2.3	91	89	0	310	44	3	4	46	1.41
32672286--32672346	28	2.2	28	85	5	81	45	0	3	50	1.17
32672204--32672346	44	3.2	43	69	20	121	46	2	3	48	1.31
32672387--32672795	120	3.4	120	94	1	714	43	2	4	49	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32672512--32672563	15	3.6	15	80	12	56	44	0	1	53	1.11
32672751--32672792	15	2.9	15	82	10	52	47	0	0	52	1.00
32672926--32673033	45	2.6	43	81	8	125	31	27	5	35	1.80
32673014--32673066	16	3.4	16	84	5	72	28	35	1	33	1.68
32678083--32678118	11	3.3	11	88	0	54	80	2	2	13	0.93
32683142--32683171	14	2.1	14	93	0	51	40	0	43	16	1.48
32689756--32689786	11	2.8	11	95	0	53	80	0	3	16	0.83
32702673--32702754	34	2.4	34	89	4	121	26	9	17	46	1.79
32702862--32702982	45	2.7	45	85	0	170	29	23	14	31	1.95
32702862--32702971	24	5.0	21	62	19	53	30	23	13	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203