genome.fa.s17.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  11  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3788079--3788147	34	2.0	34	94	0	120	20	18	27	33	1.96
3788079--3788132	17	3.2	17	72	27	60	20	16	29	33	1.95
3793890--3794182	149	2.0	149	95	0	523	38	8	8	44	1.66
3797835--3797893	20	3.0	20	82	0	64	32	10	13	44	1.77
3798107--3798137	16	1.9	16	93	0	53	54	0	3	41	1.16
3805972--3806025	24	2.2	24	83	6	65	33	7	14	44	1.73
3805964--3806223	130	2.0	130	99	0	511	30	9	14	45	1.77
3807496--3807740	42	5.8	42	93	2	404	32	21	22	24	1.98
3807496--3807827	126	2.6	126	87	1	443	30	20	21	27	1.98
3807496--3807827	84	4.0	82	83	6	369	30	20	21	27	1.98
3807895--3807928	14	2.4	14	95	0	59	52	20	8	17	1.71
3808152--3808222	21	3.4	21	80	0	79	2	45	18	33	1.64
3813673--3814036	7	42.0	9	62	32	74	33	0	20	45	1.57
3813718--3814046	26	13.1	26	87	7	459	32	0	19	46	1.57
3813718--3814046	147	2.2	151	90	5	526	32	0	19	46	1.57
3813816--3814042	19	12.5	19	66	25	93	33	0	19	46	1.56
3814083--3814230	74	2.0	74	100	0	296	40	6	1	51	1.37
3814380--3814450	13	5.5	13	86	0	106	50	2	7	39	1.44
3814379--3814450	26	2.8	26	100	0	144	50	2	6	40	1.44
3814455--3814814	17	20.6	17	70	22	207	43	1	11	43	1.51
3814422--3814823	57	7.5	57	79	16	500	44	1	11	42	1.51
3814472--3814688	44	4.7	44	78	15	217	44	1	11	42	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3814439--3814823	101	3.7	101	95	4	644	44	1	11	42	1.50
3814573--3814797	40	5.7	40	71	23	199	43	1	11	43	1.51
3816157--3816196	11	3.7	11	93	3	64	27	27	10	35	1.89
3817396--3817596	84	2.4	85	93	2	343	28	18	20	32	1.96
3819270--3820083	112	7.3	112	95	0	1416	26	29	19	24	1.98
3820031--3820106	40	1.9	40	97	0	143	22	30	17	30	1.96
3828190--3828218	13	2.1	14	93	6	51	65	17	10	6	1.44
3835503--3835550	18	2.6	19	80	9	55	56	0	2	41	1.11
3840240--3840285	19	2.3	20	85	3	58	69	4	2	23	1.17
3840729--3840774	18	2.6	18	82	0	56	58	4	4	32	1.37
3849474--3849519	19	2.3	20	85	3	58	69	4	2	23	1.17
3849963--3850008	18	2.6	18	82	0	56	58	4	4	32	1.37
3851995--3852116	44	2.8	43	85	9	158	27	27	18	25	1.98
3852127--3852341	88	2.4	88	90	1	342	20	23	27	27	1.99
3853541--3853588	25	1.9	25	82	0	60	6	25	0	68	1.12
3854522--3854591	26	2.7	25	82	4	68	57	5	14	22	1.59
3858269--3858298	15	1.9	16	93	6	53	73	6	0	20	1.05
3859265--3859297	11	2.7	13	81	18	52	66	15	0	18	1.25
3859270--3859297	11	2.5	11	100	0	56	71	14	0	14	1.15
3863586--3863654	35	1.9	36	91	2	113	30	14	21	33	1.93
3875378--3876699	577	2.3	574	82	3	1565	30	21	16	31	1.95
3877848--3877908	28	2.3	26	80	5	68	32	9	1	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3879567--3879616	24	2.1	23	85	3	64	40	0	6	54	1.25
3879865--3879929	31	2.1	31	83	11	80	26	3	18	52	1.60
3882286--3882329	19	2.5	17	85	10	61	56	2	9	31	1.43
3886267--3886320	23	2.3	24	78	15	60	62	0	5	31	1.18
3889455--3889522	16	4.2	16	96	0	127	26	0	35	38	1.57
3889738--3889792	15	3.4	16	80	16	53	50	1	0	47	1.11
3889758--3889792	18	2.0	17	88	5	52	54	0	0	45	0.99
3889878--3889912	18	2.0	17	88	5	52	54	0	0	45	0.99
3889773--3889963	61	3.2	60	67	20	155	48	5	2	43	1.38
3889736--3890019	120	2.4	120	90	2	446	48	4	1	44	1.34
3894801--3894851	22	2.3	22	75	18	52	47	3	0	49	1.20
3894956--3895033	11	7.4	11	76	17	76	60	0	1	38	1.05
3894956--3895077	51	2.3	53	91	7	194	60	0	2	36	1.10
3894938--3895086	40	3.6	39	77	11	113	60	0	2	37	1.08
3895052--3895077	11	2.4	11	100	0	52	53	0	7	38	1.30
3899885--3899931	22	2.1	22	88	0	67	29	6	19	44	1.75
3903773--3904185	153	2.8	146	79	8	383	29	7	16	47	1.72
3914500--3914571	25	2.9	24	70	13	65	27	20	20	30	1.98
3918936--3918996	28	2.2	28	91	2	97	31	22	22	22	1.99
3919104--3919157	26	2.1	26	86	6	74	33	18	25	22	1.97
3923353--3923397	24	1.9	24	82	13	58	42	31	8	17	1.80
3926744--3926864	27	4.5	27	84	4	145	20	14	21	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3927753--3927792	19	2.1	19	95	0	71	47	7	22	22	1.76
3932601--3932625	12	2.1	12	100	0	50	24	8	8	60	1.52
3936977--3937015	20	1.9	21	85	15	55	30	2	2	64	1.21
3937441--3937499	27	2.2	27	81	6	75	20	23	28	27	1.99
3937459--3937511	27	2.0	27	85	7	72	22	20	26	30	1.98
3937507--3937618	26	4.3	26	84	0	152	25	23	8	42	1.81
3941064--3941135	36	2.0	36	91	0	117	40	11	18	30	1.85
3941063--3941122	18	3.3	18	65	9	50	43	11	16	28	1.83
3944824--3944885	26	2.4	26	83	0	79	40	11	11	37	1.77
3944857--3945839	497	2.0	492	91	1	1597	30	17	17	33	1.93
3946700--3946829	49	2.7	49	82	0	161	24	13	22	39	1.91
3952492--3952536	22	2.0	22	83	8	56	42	6	8	42	1.62
3952587--3952619	15	2.2	15	94	0	57	24	9	3	63	1.38
3963766--3963947	96	1.9	97	83	4	242	43	14	12	29	1.82
3967912--3967982	26	2.7	27	86	6	92	28	28	9	33	1.89
3970904--3971184	95	3.0	95	87	1	377	35	22	17	24	1.95
3977606--3977637	14	2.3	14	100	0	64	31	46	15	6	1.71
3982733--3982762	14	2.1	14	100	0	60	33	46	13	6	1.69
3991398--3991501	14	7.4	14	79	4	102	31	29	0	38	1.58
3991398--3991501	7	14.9	7	86	0	91	31	29	0	38	1.58
3991448--3991504	7	8.1	7	96	0	96	28	31	0	40	1.57
4005054--4005150	28	3.1	34	62	32	81	29	10	13	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4006849--4006925	28	2.8	28	86	4	93	32	6	11	49	1.65
4006882--4006948	29	2.3	29	84	2	82	35	0	14	49	1.44
4011837--4011910	37	2.0	37	100	0	148	32	8	10	48	1.67
4012493--4012576	29	2.9	29	82	8	100	35	3	10	50	1.55
4021751--4021792	21	2.0	22	90	4	68	7	9	0	83	0.81
4021751--4021792	16	2.7	16	82	10	52	7	9	0	83	0.81
4022674--4022705	16	1.9	17	93	6	57	43	6	0	50	1.27
4027660--4028118	54	8.5	55	77	5	339	27	20	14	38	1.91
4027705--4028120	108	3.8	108	80	4	392	27	19	14	37	1.91
4027692--4028118	162	2.6	162	81	4	439	28	19	13	38	1.90
4028212--4028278	23	2.9	23	82	4	73	34	17	2	44	1.64
4028881--4028914	13	2.5	13	90	4	50	26	26	23	23	2.00
4029296--4029374	27	3.0	27	74	9	81	39	11	0	49	1.39
4031009--4031238	50	4.6	50	78	0	244	23	27	22	26	1.99
4031017--4031233	100	2.2	100	100	0	434	22	27	23	26	1.99
4034050--4034089	18	2.2	18	86	0	53	65	2	25	7	1.32
4035479--4035526	25	1.9	25	87	8	71	16	16	14	52	1.76
4040503--4040546	18	2.4	18	84	3	61	52	13	13	20	1.74
4041937--4041990	26	2.1	26	89	0	81	40	11	14	33	1.82
4043034--4043367	41	8.1	41	87	2	454	18	20	30	29	1.96
4043878--4043934	22	2.6	22	88	0	87	19	0	36	43	1.51
4044666--4044692	14	1.9	14	100	0	54	37	0	55	7	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4048981--4049137	42	3.7	42	78	10	169	21	18	30	29	1.97
4048997--4049157	85	1.9	86	85	3	227	22	18	31	27	1.97
4048981--4049158	43	4.2	43	78	9	186	23	18	29	28	1.98
4050680--4050748	34	2.0	34	97	0	129	30	8	15	44	1.77
4054350--4054374	11	2.3	11	100	0	50	40	28	0	32	1.57
4056562--4056608	23	2.0	23	100	0	94	51	4	4	40	1.41
4061598--4061639	15	2.7	16	82	14	52	52	2	0	45	1.13
4061607--4061648	15	2.9	15	82	10	52	52	0	0	47	1.00
4061633--4061940	61	5.1	61	69	14	271	49	6	1	42	1.39
4061717--4061768	15	3.6	15	80	12	56	53	1	0	44	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203