genome.fa.s17.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  27  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8955196--8955247	23	2.3	22	93	3	86	46	0	1	51	1.12
8975803--8975866	31	2.1	31	84	0	83	17	14	15	53	1.74
8979486--8979516	3	10.3	3	100	0	62	32	0	0	67	0.91
8984784--8984832	25	1.9	25	84	12	64	36	10	4	48	1.56
8997136--8997484	177	2.0	174	94	1	617	40	18	16	24	1.90
9008872--9009261	195	2.0	192	91	1	627	42	18	15	23	1.88
9018229--9018266	20	1.9	20	94	0	67	31	0	18	50	1.47
9019295--9019363	5	12.8	5	76	19	50	17	7	0	75	1.02
9023069--9023182	39	3.1	39	92	7	186	28	39	5	26	1.78
9025330--9025381	25	2.1	25	88	0	77	63	15	5	15	1.48
9028976--9029050	23	3.3	23	86	3	116	32	26	21	20	1.97
9041803--9041850	24	2.1	23	85	11	64	64	12	8	14	1.49
9044369--9044407	18	2.2	18	86	4	53	48	2	0	48	1.15
9057528--9057554	8	3.4	8	100	0	54	66	0	0	33	0.92
9058918--9058964	19	2.5	19	96	0	85	19	14	4	61	1.49
9064554--9064624	33	2.2	33	97	0	133	45	0	5	49	1.26
9067871--9067911	22	2.0	20	85	9	55	48	2	12	36	1.54
9071180--9071256	29	2.5	30	81	8	93	31	5	12	50	1.63
9076466--9076493	9	3.1	9	100	0	56	57	10	0	32	1.33
9076436--9076577	68	2.1	66	94	2	248	45	9	4	40	1.58
9076566--9076607	16	2.6	16	92	0	66	42	7	2	47	1.43
9076581--9076642	23	2.8	23	80	4	65	46	1	1	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9076436--9076599	68	2.5	66	86	10	216	45	9	4	40	1.55
9083731--9083803	30	2.5	29	80	10	87	42	13	12	31	1.81
9093451--9093522	35	2.1	34	84	10	92	48	0	0	51	1.00
9094950--9094986	18	2.0	19	89	5	58	24	5	5	64	1.36
9095219--9095254	18	2.0	18	88	0	54	33	13	13	38	1.85
9098539--9098570	3	10.7	3	93	0	55	37	0	0	62	0.95
9117607--9117667	32	1.9	32	96	0	113	32	18	11	37	1.86
9133253--9133282	2	14.5	2	93	6	51	50	3	0	46	1.18
9133414--9133663	81	3.1	81	88	0	374	34	16	21	27	1.95
9133358--9133663	162	1.9	164	86	5	438	34	17	21	26	1.95
9140412--9140437	2	13.0	2	100	0	52	0	0	50	50	1.00
9143133--9143174	14	3.0	14	80	13	59	30	7	26	35	1.83
9148538--9148612	25	3.0	25	82	3	89	21	28	17	33	1.96
9148546--9148629	25	3.4	25	86	0	114	21	27	19	32	1.97
9151105--9151150	21	2.1	21	84	4	56	73	2	10	13	1.17
9154528--9154633	54	2.0	54	98	0	203	39	16	9	34	1.80
9154627--9154683	29	2.0	29	96	0	105	35	15	10	38	1.82
9160311--9160341	11	2.8	11	95	0	53	67	0	3	29	1.06
9164352--9164424	28	2.5	29	84	8	87	63	2	0	34	1.09
9164492--9164556	21	3.0	21	82	12	71	23	7	3	66	1.32
9164726--9164830	50	2.1	50	87	0	147	42	6	10	40	1.65
9168802--9168838	9	4.1	9	89	0	56	48	10	10	29	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9169321--9169384	9	7.2	9	72	20	55	35	0	0	64	0.94
9170722--9170784	29	2.2	30	91	5	103	61	0	0	38	0.96
9170881--9170998	10	12.7	10	72	18	60	30	2	0	66	1.11
9170894--9171002	9	12.2	8	75	15	58	30	2	0	66	1.12
9170883--9170997	19	5.7	19	70	17	72	30	2	0	66	1.11
9170913--9170981	17	4.0	18	75	14	56	33	2	0	63	1.09
9174570--9174618	25	2.0	25	84	8	64	46	8	12	32	1.71
9177402--9177512	55	2.0	55	96	0	204	45	14	10	29	1.79
9180323--9180356	18	1.9	18	88	5	52	29	0	5	64	1.17
9180857--9180885	5	5.8	5	100	0	58	79	0	0	20	0.74
9188480--9188527	23	2.0	24	92	4	80	60	16	8	14	1.57
9201758--9201810	24	2.2	25	86	3	72	45	0	3	50	1.19
9201789--9201860	20	3.7	19	87	7	92	36	1	6	55	1.35
9201753--9201859	39	2.6	41	84	14	123	38	0	5	55	1.30
9213687--9213745	30	2.0	30	96	0	109	20	3	47	28	1.66
9220767--9220837	33	2.2	33	80	14	76	36	36	12	14	1.84
9224401--9224446	4	12.0	4	86	9	69	50	26	0	23	1.50
9224404--9224440	18	2.1	18	94	0	65	51	24	0	24	1.49
9224401--9224444	22	2.0	22	95	0	79	50	25	0	25	1.50
9226114--9226153	21	1.9	21	89	0	62	10	7	12	70	1.35
9234679--9234735	29	1.9	30	86	10	82	42	14	8	35	1.76
9238649--9238674	8	3.2	8	100	0	52	23	11	11	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9238901--9238933	16	2.1	16	88	11	50	48	0	9	42	1.35
9242441--9242745	86	3.6	83	80	6	330	34	5	26	33	1.79
9242788--9242835	24	2.0	24	100	0	96	33	4	25	37	1.75
9245265--9245357	4	23.8	4	84	4	127	45	29	2	23	1.65
9248088--9248149	21	3.2	21	60	21	53	51	9	20	17	1.73
9248081--9248155	37	2.0	37	100	0	150	46	10	21	21	1.81
9252809--9252860	25	2.1	25	81	0	59	61	11	0	26	1.30
9256101--9256165	30	2.2	30	83	2	78	46	15	6	32	1.70
9257586--9257963	188	2.0	188	94	0	666	35	12	14	37	1.84
9265685--9265747	24	2.7	24	80	2	65	53	3	1	41	1.26
9274117--9274166	22	2.3	21	86	6	73	44	4	4	48	1.40
9277972--9278013	16	2.6	16	82	10	59	54	21	7	16	1.65
9279426--9279556	42	3.0	43	70	16	119	30	25	22	22	1.99
9279538--9280303	132	5.8	131	92	0	1201	28	18	24	28	1.98
9279536--9280165	88	7.2	89	65	11	258	28	18	24	27	1.98
9280295--9280480	44	4.2	44	86	0	228	32	12	25	29	1.93
9280487--9280732	124	2.0	125	88	2	370	27	19	23	29	1.99
9282174--9282223	15	3.5	15	80	17	54	26	6	4	64	1.35
9283924--9283965	16	2.6	16	82	10	59	54	21	7	16	1.65
9286427--9286467	6	6.8	6	91	0	55	31	9	17	41	1.82
9288057--9288108	21	2.5	20	84	9	68	30	5	28	34	1.81
9289582--9289631	21	2.3	21	96	3	91	36	20	6	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9291989--9292037	24	2.0	24	92	0	80	24	8	6	61	1.47
9305547--9305571	11	2.3	11	100	0	50	44	16	16	24	1.86
9309642--9309667	2	13.0	2	100	0	52	50	50	0	0	1.00
9309669--9309731	4	15.8	4	100	0	126	50	25	0	23	1.49
9312888--9312920	3	11.0	3	100	0	66	66	0	0	33	0.92
9313472--9313498	5	5.4	5	100	0	54	18	0	0	81	0.69
9315808--9315857	16	3.2	15	80	8	64	18	6	8	68	1.36
9315799--9315857	17	3.6	16	73	17	59	16	6	6	69	1.33
9317617--9317643	13	2.1	13	100	0	54	66	7	0	25	1.17
9318542--9318577	18	1.9	18	88	5	54	27	0	2	69	1.02
9322935--9322979	16	2.9	16	80	3	56	55	15	2	26	1.52
9323882--9323929	20	2.5	20	86	3	71	54	6	0	39	1.26
9337688--9337747	27	2.3	26	75	16	61	48	3	5	43	1.41
9338980--9339039	4	15.0	4	89	0	93	28	1	25	45	1.63
9339180--9339220	4	10.2	4	94	0	73	26	0	24	48	1.51
9339271--9339312	4	10.5	4	84	0	57	21	4	28	45	1.72
9339689--9339731	4	10.8	4	100	0	86	51	25	0	23	1.49
9342806--9342833	4	7.0	4	100	0	56	25	0	25	50	1.50
9342974--9343014	4	10.2	4	94	0	73	26	0	24	48	1.51
9343065--9343106	4	10.5	4	84	0	57	21	4	28	45	1.72
9343483--9343525	4	10.8	4	100	0	86	51	25	0	23	1.49
9350991--9351024	15	2.3	15	90	10	52	0	17	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9373691--9373774	41	2.0	41	93	0	141	50	8	1	40	1.40
9377482--9377559	38	2.1	38	100	0	156	33	25	7	33	1.84
9393335--9393367	10	3.3	10	95	0	57	42	27	0	30	1.56
9416215--9416417	103	2.0	103	98	0	388	43	19	17	19	1.88
9422810--9422878	32	2.2	31	82	7	77	42	8	15	33	1.78
9427026--9427056	16	2.0	16	93	6	55	54	12	12	19	1.70
9430290--9430328	7	5.4	7	96	3	69	15	0	25	58	1.37
9430290--9430334	14	3.2	14	90	6	56	15	2	22	60	1.46
9430290--9430334	21	2.1	21	88	8	65	15	2	22	60	1.46
9433206--9433236	6	5.2	6	100	0	62	51	16	0	32	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203