genome.fa.s17.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  119  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37678910--37678953	14	3.2	13	81	15	52	6	6	0	86	0.71
37679737--37679796	25	2.4	25	83	8	68	55	6	16	21	1.64
37689808--37689863	16	3.4	16	72	13	60	42	3	19	33	1.69
37689804--37689870	33	2.0	33	97	0	125	38	2	22	35	1.70
37701373--37701417	6	7.5	6	94	0	81	51	13	0	35	1.41
37701373--37701418	24	1.9	24	100	0	92	50	13	0	36	1.41
37706828--37706900	10	7.9	10	68	17	50	42	0	1	56	1.08
37706825--37706900	28	2.9	27	78	7	84	43	0	1	55	1.08
37706778--37706948	59	2.9	58	70	10	161	42	1	4	52	1.30
37706778--37707022	117	2.1	116	80	11	279	42	1	5	51	1.32
37707122--37707227	44	2.5	41	77	18	126	36	32	3	27	1.75
37707135--37707227	44	2.1	46	89	4	145	38	31	4	25	1.75
37707209--37707261	16	3.3	16	87	10	81	24	33	5	35	1.79
37707668--37707804	41	3.5	40	75	15	131	24	16	25	32	1.96
37714434--37714608	85	2.1	85	90	0	269	37	1	15	45	1.54
37719917--37720010	37	2.6	36	83	5	116	41	28	10	19	1.84
37721137--37721257	39	3.0	41	79	11	124	20	18	28	32	1.96
37721141--37721360	41	5.4	41	76	9	193	21	17	26	34	1.95
37721792--37721829	15	2.6	14	87	4	58	18	0	36	44	1.50
37721821--37721887	22	3.1	22	82	2	73	16	1	41	40	1.57
37721842--37721912	36	2.0	36	88	0	106	19	1	39	39	1.61
37721840--37721905	29	2.3	30	76	7	82	18	0	43	37	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37722047--37722081	15	2.4	15	95	4	63	20	0	37	42	1.52
37722047--37722168	7	17.0	7	70	11	77	22	0	37	40	1.54
37722106--37722167	29	2.1	30	79	8	74	24	0	35	40	1.55
37721659--37722255	255	2.3	257	91	2	948	30	3	22	43	1.68
37726370--37726498	43	3.1	43	75	13	126	30	13	24	31	1.93
37726391--37726511	38	3.1	38	81	6	125	28	14	25	32	1.94
37726395--37726646	43	6.2	42	75	12	172	27	17	25	28	1.97
37726460--37726600	76	1.9	76	87	3	212	26	19	25	28	1.98
37726433--37726649	119	1.8	119	82	4	276	27	18	25	28	1.98
37729644--37729829	50	3.7	50	86	1	239	25	24	29	20	1.99
37729645--37729868	50	4.5	49	84	3	148	27	23	27	21	1.99
37730078--37730116	12	3.2	12	85	0	51	51	5	23	20	1.67
37733522--37733569	23	2.0	26	84	12	66	31	29	10	29	1.90
37737611--37737679	33	2.0	33	81	10	77	43	23	0	33	1.54
37739034--37739085	25	2.1	25	100	0	104	46	3	15	34	1.64
37739875--37739928	20	2.8	20	86	8	67	72	5	0	22	1.05
37740746--37740814	29	2.3	31	87	5	97	46	18	10	24	1.80
37741913--37741949	19	1.9	19	89	10	58	29	0	0	70	0.88
37742148--37742202	18	3.1	17	84	2	65	58	1	0	40	1.09
37745394--37745479	44	2.0	44	95	4	158	43	4	9	43	1.57
37746119--37746264	41	3.6	41	91	1	240	29	20	30	19	1.97
37746929--37746965	2	18.5	2	100	0	74	0	0	48	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37749688--37749727	20	2.0	21	90	5	64	35	0	5	60	1.19
37759646--37759702	30	1.9	30	89	7	89	42	28	12	17	1.85
37764267--37764323	30	1.9	30	92	0	96	38	26	12	22	1.89
37768935--37769028	46	2.0	46	89	0	143	37	21	17	24	1.94
37772968--37773003	14	2.6	14	95	0	63	19	8	5	66	1.38
37773390--37773483	46	2.0	46	97	0	179	34	22	20	23	1.97
37775198--37775266	20	3.5	20	75	20	74	44	7	1	46	1.40
37781534--37781596	23	2.7	22	79	16	74	20	7	19	52	1.70
37781641--37781700	23	2.6	23	74	10	68	16	10	20	53	1.71
37781502--37781731	107	2.1	107	94	0	397	25	6	23	45	1.76
37785299--37785462	45	3.6	45	99	0	319	30	20	26	21	1.98
37786188--37786284	45	2.2	45	83	5	117	34	28	4	32	1.76
37786264--37786301	16	2.4	16	86	0	58	28	34	2	34	1.71
37787216--37787282	34	1.9	34	85	8	91	64	4	25	5	1.36
37788679--37788711	14	2.2	16	89	10	52	78	0	18	3	0.87
37808222--37808358	43	3.2	43	81	5	141	30	18	20	30	1.96
37816402--37816789	47	8.1	47	90	3	506	30	9	31	28	1.89
37816908--37816986	37	2.1	37	90	0	122	24	18	31	25	1.98
37824635--37824720	20	4.4	20	79	2	86	44	19	25	10	1.83
37824638--37824715	40	2.0	39	82	7	95	44	20	24	10	1.82
37825147--37825192	16	3.1	15	79	17	51	43	10	0	45	1.39
37831077--37832764	424	4.0	424	92	1	2724	35	18	11	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37838320--37838438	48	2.5	48	94	0	211	13	22	1	62	1.40
37841462--37841496	18	1.9	18	88	0	52	48	14	11	25	1.77
37841541--37841603	30	2.1	31	82	8	76	15	42	1	39	1.57
37842168--37842205	19	2.0	19	89	0	58	34	7	23	34	1.84
37843909--37843948	21	2.0	21	85	5	55	55	5	17	22	1.61
37845010--37845041	16	2.0	16	93	0	55	25	9	25	40	1.85
37847418--37847533	27	4.3	27	76	4	108	22	23	14	39	1.91
37850885--37850951	33	2.0	33	97	0	125	49	22	4	23	1.68
37850886--37850969	33	2.7	31	83	8	93	46	21	3	28	1.68
37863546--37863598	24	2.2	24	83	6	63	20	22	28	28	1.99
37882669--37882794	39	3.3	39	93	1	209	49	11	9	29	1.71
37891083--37891267	79	2.3	81	81	8	218	25	27	22	24	2.00
37891064--37891267	40	5.1	40	81	8	229	25	27	22	25	2.00
37891433--37891901	235	2.0	235	99	0	929	28	21	15	34	1.94
37892096--37892196	51	2.0	50	98	1	193	26	33	11	27	1.92
37892275--37892592	162	2.0	163	91	1	521	39	20	10	30	1.85
37893410--37893609	100	2.0	100	99	0	391	29	21	16	33	1.95
37893846--37894146	150	2.0	150	98	0	584	38	19	8	33	1.82
37895131--37896111	40	24.8	40	96	2	1813	24	27	22	24	2.00
37896041--37896099	29	2.0	29	100	0	118	20	32	23	23	1.98
37897330--37897407	37	2.1	37	85	0	102	26	30	17	24	1.97
37897526--37897617	47	2.0	47	88	0	139	28	28	8	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37898967--37899144	27	6.6	27	80	6	164	29	28	16	25	1.97
37898988--37899143	82	1.9	81	85	3	215	28	28	16	25	1.97
37909937--37910239	40	7.6	40	89	3	389	27	28	20	23	1.99
37917927--37918189	40	6.6	40	88	3	316	26	27	20	24	1.99
37918121--37918198	40	1.9	41	82	10	97	26	28	21	23	1.99
37921979--37922019	21	2.0	21	85	9	57	34	0	12	53	1.38
37926578--37926639	18	3.6	18	74	12	67	16	41	0	41	1.48
37935162--37935424	40	6.6	40	88	3	325	24	20	27	26	1.99
37935201--37935459	80	3.3	80	85	3	256	25	20	27	25	1.99
37938659--37938702	21	2.1	21	83	8	54	31	0	0	68	0.90
37938688--37938714	8	3.4	8	100	0	54	11	0	0	88	0.50
37945855--37945935	15	6.0	13	70	25	53	50	3	0	45	1.19
37945864--37945931	27	2.6	26	90	9	111	50	4	0	45	1.22
37955739--37955837	31	3.3	31	69	11	89	52	11	7	29	1.63
37968951--37969535	89	6.6	89	93	1	956	31	18	22	26	1.97
37972952--37972990	5	8.2	5	86	8	55	82	0	17	0	0.68
37975307--37975395	43	2.1	42	80	2	97	30	31	16	21	1.96
37976637--37976704	18	3.5	18	69	18	55	39	8	2	48	1.49
37976653--37976721	22	3.3	22	69	19	74	37	11	1	49	1.48
37976642--37976724	41	2.0	41	100	0	166	37	9	2	50	1.48
37976645--37976708	19	3.2	19	68	20	58	37	7	3	51	1.47
37978916--37978940	10	2.5	10	100	0	50	40	8	0	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37989739--37989773	18	1.9	18	94	0	61	17	14	5	62	1.49
37990674--37990756	35	2.4	35	81	0	103	14	14	27	43	1.84
37990770--37990830	33	1.9	32	87	12	90	11	4	34	49	1.61
38010387--38010439	21	2.5	20	84	6	61	26	3	18	50	1.64
38015240--38015295	14	3.6	16	76	18	55	46	0	1	51	1.11
38015244--38015289	14	3.1	15	87	6	58	47	0	2	50	1.13
38015368--38015405	18	2.1	19	85	5	51	31	2	7	57	1.41
38015491--38015525	17	1.9	19	88	11	56	31	2	2	62	1.24
38015926--38016049	59	2.1	59	90	3	196	20	24	14	40	1.90
38017270--38017316	18	2.6	19	83	10	62	34	10	17	38	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203