genome.fa.s17.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  137  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43660115--43660301	54	3.4	54	72	11	189	53	6	0	40	1.27
43660089--43660479	113	3.4	113	94	3	638	52	4	1	41	1.30
43660324--43660356	18	1.9	17	88	11	50	57	0	3	39	1.14
43660383--43660429	23	2.0	24	84	15	64	53	4	2	40	1.32
43660410--43660468	26	2.3	25	85	8	82	57	0	0	42	0.98
43660447--43660479	18	1.9	17	88	11	50	57	0	3	39	1.14
43660310--43660501	64	3.1	64	66	18	186	50	4	3	42	1.39
43660326--43660523	59	3.3	58	70	17	186	48	5	4	42	1.44
43660341--43660533	64	3.1	64	69	18	206	47	5	4	42	1.46
43664716--43664828	41	2.8	41	98	0	217	26	23	26	23	2.00
43665706--43665809	49	2.1	49	91	3	165	50	8	9	30	1.65
43667578--43667643	33	2.0	33	96	0	123	37	3	18	40	1.66
43667850--43667886	19	1.9	19	94	0	65	35	0	21	43	1.53
43668187--43668221	18	1.9	18	88	0	52	37	0	5	57	1.23
43678428--43678497	13	5.4	13	74	16	56	42	2	2	51	1.31
43678425--43678492	18	3.3	22	62	26	58	41	2	2	52	1.31
43678432--43678511	39	2.1	39	100	0	160	41	5	2	51	1.37
43679453--43679507	24	2.2	26	81	12	71	45	0	1	52	1.11
43679720--43679755	16	2.2	16	100	0	72	38	36	0	25	1.56
43680001--43680047	22	2.1	23	92	4	78	40	2	0	57	1.11
43680001--43680048	20	2.2	21	85	10	62	41	2	0	56	1.11
43681771--43681817	23	2.0	23	95	0	85	14	21	27	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43681891--43681941	26	2.0	26	96	0	93	17	27	3	50	1.63
43682038--43683336	589	2.2	589	98	0	2526	26	13	18	42	1.87
43683299--43683355	24	2.3	24	87	6	87	22	8	17	50	1.73
43684957--43685043	45	2.0	44	82	11	106	40	27	3	28	1.73
43688283--43688481	43	4.6	43	74	12	156	28	16	25	30	1.96
43694247--43694348	49	2.2	45	84	7	132	30	15	7	46	1.74
43698742--43698841	49	2.0	49	81	7	114	31	15	11	43	1.81
43705115--43705139	12	2.1	12	100	0	50	20	0	8	72	1.10
43713412--43713452	16	2.6	16	80	0	55	53	7	9	29	1.60
43714172--43714208	19	1.9	19	88	0	56	45	0	2	51	1.15
43714681--43714716	16	2.2	16	90	0	54	75	0	0	25	0.81
43729617--43729705	45	2.0	45	90	0	142	35	23	14	25	1.93
43729716--43729899	51	3.6	50	77	3	190	29	27	17	24	1.98
43729714--43729898	101	1.8	101	88	3	282	30	27	17	24	1.97
43730131--43730187	30	1.9	30	92	0	96	28	17	10	43	1.82
43731138--43731175	19	2.0	19	90	10	60	52	10	10	26	1.68
43733422--43733506	42	2.0	44	86	9	122	65	0	1	32	1.00
43734394--43734441	6	7.8	6	84	13	53	77	0	2	20	0.88
43734395--43734441	16	3.0	16	75	6	51	76	0	2	21	0.89
43737000--43737033	13	2.5	13	85	4	50	79	0	5	14	0.91
43748849--43748873	7	3.6	7	100	0	50	48	12	0	40	1.40
43755515--43755906	140	2.8	137	88	3	590	41	8	5	44	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43759282--43759331	18	2.8	17	76	8	55	8	34	16	42	1.77
43763165--43763560	27	14.8	27	82	4	318	20	16	20	42	1.89
43763174--43763560	54	7.2	54	80	2	379	20	16	19	42	1.89
43763174--43763547	134	2.8	132	80	4	430	20	16	20	42	1.89
43765974--43766158	79	2.3	82	84	7	238	25	27	22	24	2.00
43765955--43766158	40	5.1	40	82	8	238	25	27	22	25	2.00
43774828--43774858	6	5.2	6	100	0	62	67	0	32	0	0.91
43779312--43779352	21	2.0	21	90	4	66	36	21	7	34	1.82
43784578--43784651	14	5.2	14	69	13	53	6	16	2	74	1.15
43784633--43784691	21	2.8	21	76	2	64	8	8	5	77	1.10
43784643--43784678	12	3.2	12	81	18	51	13	0	8	77	0.98
43797025--43797437	140	3.0	139	87	4	602	38	8	6	46	1.60
43801832--43801902	26	2.7	26	82	0	88	25	26	21	26	1.99
43808772--43808801	15	2.0	15	93	0	51	76	0	10	13	1.01
43810069--43810126	23	2.4	25	85	5	75	22	6	25	44	1.77
43812654--43812707	16	3.3	17	73	17	51	53	1	0	44	1.11
43816716--43816818	47	2.3	45	91	6	172	28	6	7	57	1.53
43816728--43816823	47	2.0	47	100	0	192	27	6	10	56	1.57
43817188--43817718	107	5.0	107	96	0	949	31	18	17	32	1.94
43837415--43838300	128	6.9	128	90	0	1396	33	21	20	24	1.97
43839021--43839063	4	10.5	4	80	5	50	18	0	4	76	0.95
43839021--43839063	17	2.6	16	92	3	68	18	0	4	76	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43840024--43840054	15	2.1	15	93	0	53	19	0	16	64	1.29
43840305--43840622	108	3.0	106	88	1	474	30	16	16	35	1.92
43840318--43840630	106	3.0	104	82	5	385	30	16	16	36	1.92
43851761--43851819	30	2.0	30	100	0	118	27	5	10	57	1.52
43854547--43854605	25	2.4	25	83	11	68	67	1	5	25	1.20
43859030--43859155	50	2.6	50	80	2	139	35	8	23	31	1.86
43864462--43864490	5	5.8	5	100	0	58	79	0	0	20	0.74
43868530--43868623	47	2.0	47	91	0	152	27	13	24	34	1.93
43869622--43869689	31	2.2	31	91	0	109	48	8	19	23	1.76
43874144--43874481	40	8.5	40	86	3	416	26	27	20	25	1.99
43886093--43886139	25	2.0	25	91	8	80	51	8	19	21	1.73
43894045--43894083	21	1.9	21	89	5	62	66	2	25	5	1.25
43902023--43902076	23	2.4	23	93	3	92	22	9	5	62	1.45
43906965--43907005	20	2.0	20	100	0	82	24	7	9	58	1.55
43909164--43909197	18	1.9	18	88	5	52	47	11	0	41	1.40
43911321--43911373	20	2.7	20	74	8	56	67	7	0	24	1.16
43912544--43912587	21	2.1	21	87	4	63	59	0	2	38	1.10
43912574--43912609	17	2.1	17	94	0	63	80	0	2	16	0.83
43913805--43913846	14	2.7	16	78	17	52	71	7	0	21	1.09
43916803--43916856	22	2.5	22	87	6	74	11	9	3	75	1.15
43916836--43916877	9	4.6	9	87	3	57	14	9	0	76	1.02
43918790--43918821	6	5.2	6	96	3	55	15	18	0	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43923478--43923535	24	2.4	25	80	8	66	53	0	10	36	1.35
43925228--43925524	131	2.3	131	82	4	339	27	24	18	29	1.98
43925263--43925510	131	1.9	132	85	5	342	27	25	18	27	1.98
43925511--43926007	45	11.0	45	87	0	690	30	24	15	28	1.96
43927272--43927364	46	2.0	46	89	0	141	11	22	20	45	1.84
43928251--43928289	5	7.8	5	88	11	62	0	17	0	82	0.68
43928251--43928290	20	2.1	19	95	4	71	0	17	0	82	0.67
43932048--43932114	24	2.7	25	75	13	66	52	2	11	32	1.53
43932296--43932333	15	2.6	15	87	4	51	60	7	2	28	1.38
43933736--43933876	72	2.0	72	91	2	230	50	16	9	23	1.75
43939320--43939556	128	1.9	128	85	3	334	40	13	13	33	1.83
43939578--43939818	120	2.0	120	92	0	401	37	6	19	36	1.77
43943599--43943783	79	2.3	81	82	9	220	25	27	23	24	2.00
43943599--43943783	40	4.7	40	79	12	202	25	27	23	24	2.00
43952768--43952952	79	2.3	81	83	7	227	24	27	22	24	2.00
43952768--43952952	40	4.7	40	82	7	225	24	27	22	24	2.00
43955767--43955896	63	2.1	63	100	0	260	19	15	28	36	1.92
43958256--43958347	13	7.0	13	71	9	62	40	4	18	36	1.71
43960777--43960819	20	2.0	20	86	8	59	67	2	0	30	1.03
43968575--43968812	41	5.8	41	97	0	395	29	21	22	27	1.99
43969027--43969090	33	2.0	32	90	3	101	26	9	25	39	1.86
43969034--43969107	33	2.3	33	80	2	87	28	8	25	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43976099--43976123	2	12.5	2	100	0	50	48	0	0	52	1.00
43976311--43976589	41	6.8	41	93	3	445	29	20	22	27	1.98
43976804--43976867	33	2.0	32	90	3	101	26	9	25	39	1.86
43976811--43976884	33	2.3	33	80	2	87	28	8	25	37	1.84
43978068--43978097	13	2.4	12	89	10	51	30	3	23	43	1.70
43979377--43979539	76	2.1	76	81	8	188	36	6	18	38	1.77
43979734--43979828	41	2.3	41	96	0	172	28	21	24	26	1.99
43981758--43981836	34	2.3	34	80	8	81	39	3	17	39	1.68
43982085--43982188	41	2.5	41	93	3	174	26	20	30	22	1.98
43982031--43982188	82	1.9	82	85	10	216	29	18	27	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203