genome.fa.s17.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  101  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31930251--31930281	14	2.2	14	94	0	53	12	0	9	77	0.99
31950736--31950773	13	2.8	14	84	4	51	42	10	18	28	1.83
31952857--31952913	20	2.9	20	80	12	57	68	7	0	24	1.14
31952943--31953020	9	8.7	9	86	0	102	24	6	24	44	1.77
31952943--31953021	18	4.4	18	90	0	113	24	6	24	45	1.76
31953085--31953164	29	2.8	29	98	0	151	31	7	17	43	1.77
31957283--31957320	18	2.1	18	85	9	51	81	2	13	2	0.90
31958631--31958704	37	2.0	37	97	0	139	40	28	10	20	1.86
31976505--31976529	2	12.5	2	100	0	50	48	0	0	52	1.00
31979496--31979530	18	2.0	17	88	5	52	45	0	0	54	0.99
31979481--31979784	120	2.5	120	96	1	547	42	2	4	50	1.37
31979616--31979650	18	2.0	17	88	5	52	45	0	0	54	0.99
31979916--31980025	45	2.6	43	79	13	122	31	27	5	35	1.80
31980004--31980057	16	3.4	16	92	0	81	31	33	0	35	1.58
31980675--31980717	3	14.3	3	100	0	86	67	0	0	32	0.91
31986587--31986705	23	5.2	22	80	8	121	44	26	13	15	1.83
31990114--31990162	5	10.0	5	82	4	64	75	2	4	18	1.06
31993319--31993383	28	2.3	28	89	0	94	60	16	6	16	1.56
32007200--32007390	30	6.4	30	90	0	265	18	31	31	17	1.95
32008632--32008771	70	2.0	70	100	0	280	28	17	10	44	1.81
32013934--32013991	10	5.5	10	76	17	55	74	6	0	18	1.04
32014356--32014425	29	2.4	28	77	17	79	75	0	5	18	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32014375--32014420	16	2.9	16	87	9	60	73	0	0	26	0.83
32014382--32014417	12	3.2	12	92	7	58	77	0	0	22	0.76
32016220--32016291	36	2.0	36	97	0	135	31	13	13	40	1.85
32017719--32017755	16	2.3	16	86	13	58	40	0	5	54	1.24
32017723--32017757	15	2.4	14	86	13	52	37	0	5	57	1.23
32031379--32031426	18	2.7	17	78	9	60	39	16	2	41	1.60
32037459--32037523	27	2.4	27	81	0	85	49	21	15	13	1.79
32040805--32040937	27	5.0	27	87	0	187	43	22	17	16	1.87
32051905--32051951	23	2.0	23	100	0	94	23	0	38	38	1.55
32052610--32053158	27	20.3	27	85	1	670	42	21	16	19	1.90
32052585--32053158	81	7.1	81	86	2	749	42	21	16	19	1.89
32061488--32061545	20	2.8	21	81	7	73	24	3	3	68	1.20
32071222--32071572	173	2.0	175	95	1	634	24	14	19	42	1.88
32080067--32080254	51	3.7	50	78	4	164	31	27	16	25	1.96
32081419--32081444	13	2.0	13	100	0	52	38	7	7	46	1.61
32089802--32089865	22	3.1	22	63	28	59	46	10	9	32	1.71
32089785--32089865	39	2.1	39	97	0	153	46	11	9	32	1.72
32090763--32091692	469	2.0	469	96	0	1718	30	25	17	25	1.98
32095129--32095222	48	1.9	48	86	2	134	42	22	15	19	1.89
32095454--32095530	39	2.0	39	100	0	154	46	12	11	28	1.77
32098076--32098122	21	2.3	21	85	3	60	38	4	12	44	1.62
32116880--32116915	16	2.2	16	90	0	54	36	13	27	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32124102--32124137	18	1.9	19	94	5	65	13	0	13	72	1.13
32130906--32130957	23	2.3	23	75	18	54	46	15	26	11	1.80
32135707--32135772	33	2.0	33	96	0	123	39	10	22	27	1.87
32135930--32135967	18	2.2	18	90	9	62	21	5	2	71	1.19
32142692--32142721	13	2.2	14	94	5	53	6	20	3	70	1.25
32144743--32144787	18	2.5	18	82	7	56	37	4	17	40	1.70
32151362--32151764	157	2.6	157	95	0	716	31	10	10	47	1.71
32153452--32153575	43	2.9	43	79	11	119	20	19	29	31	1.97
32154222--32154256	15	2.3	15	90	9	54	25	0	22	51	1.48
32154730--32155177	225	2.0	225	92	1	738	28	20	24	25	1.99
32157802--32158500	349	2.0	349	98	0	1335	28	16	24	30	1.96
32161605--32161948	47	7.3	47	99	0	661	32	11	14	40	1.83
32162291--32162315	12	2.1	12	100	0	50	40	0	8	52	1.31
32171625--32172034	27	15.1	27	84	1	390	39	23	17	19	1.92
32174251--32174340	45	2.0	45	100	0	180	28	11	26	33	1.91
32183282--32183338	29	2.0	28	83	10	71	38	3	5	52	1.41
32186894--32186941	22	2.1	21	82	17	53	27	10	16	45	1.80
32188632--32188684	26	2.0	26	96	0	97	52	11	1	33	1.48
32188636--32188691	26	2.2	26	90	0	85	50	12	1	35	1.51
32194708--32194783	5	15.2	5	100	0	152	40	0	0	59	0.98
32196163--32196212	24	2.1	24	92	0	82	24	32	30	14	1.94
32197241--32197350	23	5.1	21	78	13	116	37	22	20	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32197280--32197350	23	3.0	24	91	6	119	36	19	21	22	1.95
32197633--32198191	279	2.0	279	100	0	1118	39	17	4	38	1.69
32198792--32198842	5	10.6	5	76	23	56	60	0	0	39	0.97
32198792--32198843	18	3.1	16	86	13	70	59	0	0	40	0.97
32198792--32198843	25	2.1	25	86	13	72	59	0	0	40	0.97
32217463--32217623	27	6.0	27	87	0	223	38	23	17	20	1.93
32217463--32217623	81	2.0	81	90	0	250	38	23	17	20	1.93
32217988--32218048	28	2.2	27	91	2	95	22	22	22	31	1.99
32231169--32231657	250	2.0	248	88	3	732	37	10	19	33	1.85
32232511--32232648	72	2.0	72	85	5	194	39	3	5	51	1.43
32233967--32234003	19	1.9	19	100	0	74	21	21	24	32	1.98
32235549--32235646	38	2.7	38	79	4	94	29	18	21	30	1.97
32259234--32259265	15	2.2	15	94	5	57	65	15	0	18	1.27
32260151--32260318	78	2.2	78	96	0	309	27	22	14	35	1.93
32268554--32268584	3	10.3	3	100	0	62	35	0	32	32	1.58
32269646--32269685	18	2.2	18	90	0	62	52	0	5	42	1.23
32269779--32269829	19	2.6	19	78	3	57	50	3	1	43	1.31
32272856--32273063	107	1.9	107	93	0	353	34	18	16	30	1.93
32274810--32274858	24	2.0	24	96	0	89	28	18	0	53	1.45
32275467--32275738	40	6.8	40	89	3	420	24	20	25	29	1.99
32275467--32275754	122	2.4	123	90	2	458	23	20	25	30	1.98
32287642--32287714	36	2.0	36	97	0	137	15	9	27	47	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32289961--32290142	35	5.1	35	78	2	157	41	17	11	30	1.84
32289990--32290141	70	2.1	72	81	2	173	43	17	9	29	1.81
32296107--32296142	18	1.9	19	88	5	56	30	27	2	38	1.71
32303311--32303357	21	2.2	21	88	0	67	29	17	23	29	1.97
32304583--32304699	44	2.8	41	88	3	162	24	20	25	29	1.99
32304585--32304699	41	2.7	42	87	4	160	25	20	26	28	1.99
32304585--32304733	44	3.5	41	84	7	156	27	19	24	28	1.98
32304819--32304928	41	2.6	41	84	7	123	28	19	22	30	1.98
32304624--32305053	195	2.2	195	99	0	851	31	18	20	29	1.96
32305016--32305189	45	3.8	45	73	7	170	32	16	20	30	1.94
32305271--32305672	45	8.8	45	69	14	164	31	18	20	29	1.96
32306377--32306420	20	2.2	20	92	8	72	15	4	0	79	0.89
32307205--32307246	23	1.9	22	85	9	59	40	11	4	42	1.63
32308466--32308509	22	2.0	23	90	4	72	56	4	9	29	1.50
32309261--32309392	19	6.8	19	91	3	219	36	15	10	37	1.82
32309254--32309391	59	2.4	59	91	4	221	36	14	10	38	1.80
32309577--32310159	44	13.5	42	73	11	376	27	23	21	27	1.99
32309568--32310080	89	5.9	88	71	15	318	27	23	21	27	1.99
32309710--32310036	173	1.9	173	82	7	414	27	23	22	26	1.99
32309558--32310163	217	2.8	217	97	0	1131	27	23	21	27	1.99
32310151--32310407	132	1.9	132	96	0	478	23	26	22	28	1.99
32311671--32311703	6	5.8	6	86	13	52	0	0	12	87	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32311660--32311706	10	4.6	10	87	12	69	0	0	10	89	0.49
32311662--32311703	22	2.0	22	95	4	77	0	0	11	88	0.53
32316189--32316383	98	2.0	98	95	0	354	36	25	10	27	1.89
32317228--32317359	19	6.8	19	89	3	210	35	15	10	38	1.82
32317221--32317358	59	2.4	59	90	7	214	36	14	10	39	1.80
32321416--32321916	72	6.9	72	79	5	435	25	20	16	38	1.92
32321435--32321923	145	3.4	144	78	8	469	25	20	16	38	1.92
32321442--32321952	35	14.1	38	78	10	373	25	20	16	38	1.93
32322073--32322128	25	2.2	25	83	3	67	32	17	5	44	1.72
32322395--32322509	38	3.0	38	93	2	203	19	2	26	51	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203