genome.fa.s17.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  134  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42592539--42592710	93	1.8	93	96	0	317	27	29	21	20	1.98
42592532--42592707	46	3.8	46	79	12	216	28	29	21	20	1.98
42596578--42596638	24	2.6	24	92	2	97	44	1	4	49	1.33
42596900--42596973	38	1.9	39	81	8	89	33	4	6	55	1.45
42600708--42600736	15	1.9	15	100	0	58	44	6	6	41	1.58
42602508--42602870	179	2.0	181	96	1	676	24	17	25	32	1.97
42608259--42608305	23	2.0	23	100	0	94	40	8	8	42	1.66
42615933--42616162	78	3.0	78	98	0	444	30	16	13	40	1.86
42637281--42637385	40	2.6	39	79	4	102	34	14	30	20	1.93
42648350--42648713	49	7.6	49	92	3	573	29	29	7	32	1.85
42654918--42655000	28	3.0	28	83	10	91	16	22	21	38	1.93
42654932--42655001	28	2.6	27	88	2	95	17	20	25	37	1.94
42661132--42661181	24	2.1	24	85	7	66	20	6	8	66	1.40
42662877--42662911	16	2.1	17	89	5	54	37	0	51	11	1.38
42682862--42682917	27	2.0	28	89	3	87	21	26	17	33	1.96
42683330--42683364	16	2.1	17	89	5	54	37	0	51	11	1.38
42691400--42691474	38	1.9	39	94	2	134	29	0	40	30	1.57
42715693--42715773	40	2.0	40	85	4	110	25	28	19	25	1.99
42719149--42719173	12	2.1	12	100	0	50	60	0	0	40	0.97
42726471--42726562	35	2.7	35	77	3	107	17	26	16	40	1.90
42731372--42731401	9	3.3	9	90	0	51	46	13	10	30	1.75
42731483--42731535	20	2.7	20	88	2	81	54	7	3	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42731777--42731822	23	2.0	23	82	0	56	34	6	6	52	1.53
42731995--42732109	57	2.0	56	84	1	149	40	14	24	20	1.90
42734301--42734345	20	2.2	21	84	4	56	68	8	0	22	1.16
42744806--42744938	69	1.9	70	90	1	214	32	14	16	36	1.89
42748530--42748605	30	2.5	30	93	0	125	21	32	27	18	1.96
42750990--42751044	22	2.4	23	87	6	76	38	1	1	58	1.20
42755999--42756231	41	5.6	40	79	8	268	35	24	18	21	1.95
42755998--42756234	84	2.8	84	92	0	411	35	24	17	21	1.95
42758668--42758740	27	2.7	27	82	0	92	36	20	20	21	1.95
42761843--42762351	206	2.5	205	85	3	695	32	11	15	40	1.84
42762371--42762413	11	3.9	11	84	0	59	48	9	6	34	1.62
42774775--42774819	20	2.1	23	88	12	69	22	4	2	71	1.15
42780882--42780956	38	2.0	38	89	0	114	34	16	10	38	1.83
42781421--42781582	86	1.9	86	83	7	213	37	18	16	28	1.92
42782981--42783106	26	4.8	26	78	3	121	29	34	13	22	1.92
42785226--42785256	16	2.0	16	93	6	55	41	19	12	25	1.87
42787645--42787716	24	3.0	24	85	6	92	36	20	26	16	1.94
42787677--42787726	24	2.1	24	88	0	73	40	22	26	12	1.88
42787758--42787823	26	2.5	26	83	7	80	36	24	24	15	1.93
42792845--42793027	41	4.5	41	88	2	165	21	27	20	30	1.98
42792880--42793041	41	4.0	41	93	1	254	22	28	20	28	1.99
42792886--42793059	82	2.1	82	87	4	244	22	27	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42802170--42802203	15	2.3	15	100	0	68	58	5	0	35	1.22
42803440--42803487	24	2.0	24	83	4	60	79	4	16	0	0.89
42810440--42810475	9	4.0	9	85	0	54	30	11	33	25	1.90
42810537--42810573	9	4.1	9	92	0	65	45	13	10	29	1.77
42810622--42810682	30	2.0	31	87	3	88	19	45	0	34	1.51
42810943--42810982	20	1.9	21	85	10	55	22	22	0	55	1.44
42811597--42811622	5	5.2	5	100	0	52	19	19	19	42	1.90
42812195--42812224	15	2.0	15	100	0	60	6	26	26	40	1.81
42819963--42820010	24	2.0	24	87	0	69	47	8	6	37	1.59
42819968--42820019	24	2.2	24	82	0	59	50	7	5	36	1.55
42824139--42824178	20	2.0	20	90	0	62	30	10	10	50	1.69
42824124--42824190	34	1.9	35	87	3	100	32	8	11	46	1.72
42837396--42837497	42	2.4	42	81	0	114	17	24	18	39	1.92
42850013--42850047	18	1.9	18	88	0	52	25	28	0	45	1.54
42851529--42851569	21	1.9	22	85	5	57	46	9	2	41	1.50
42853749--42853798	24	2.1	24	88	0	73	52	6	4	38	1.45
42854346--42854408	31	2.0	31	96	0	117	28	14	28	28	1.95
42858734--42858943	40	5.3	39	87	5	233	24	21	28	25	1.99
42858681--42858943	120	2.2	120	81	4	300	25	21	27	25	1.99
42858734--42858978	80	3.1	80	81	3	228	25	21	28	24	1.99
42866782--42866872	40	2.3	40	92	3	148	24	19	27	28	1.99
42870979--42871024	25	1.9	23	82	8	56	17	19	2	60	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42874089--42874198	34	3.2	34	67	5	105	26	10	29	33	1.90
42874082--42874213	68	1.9	68	90	3	212	25	11	28	34	1.90
42874310--42874417	34	3.2	34	77	2	110	23	9	25	42	1.83
42874319--42874420	17	6.0	17	75	0	60	24	9	22	43	1.83
42874314--42874414	51	2.0	51	86	0	139	23	8	22	44	1.81
42878061--42878286	50	4.5	50	79	3	233	20	29	21	29	1.98
42878253--42878318	32	2.1	32	94	0	114	27	28	18	25	1.98
42884004--42884055	25	2.1	24	96	3	95	38	9	11	40	1.74
42884009--42884062	25	2.2	25	86	6	74	35	12	12	38	1.82
42884791--42885087	50	5.8	50	77	4	247	22	28	20	28	1.98
42900161--42900185	12	2.1	12	100	0	50	76	8	0	16	1.02
42911912--42911941	15	1.9	16	93	6	53	33	3	0	63	1.11
42911985--42912231	131	1.9	134	87	7	371	36	5	4	53	1.43
42912165--42912198	12	2.7	13	90	4	52	35	0	0	64	0.94
42912166--42912203	13	3.0	13	88	3	51	39	0	2	57	1.12
42915987--42916039	26	2.0	26	100	0	106	45	0	16	37	1.48
42916437--42916589	21	7.3	21	70	2	92	15	20	17	46	1.84
42916437--42916559	42	2.9	42	85	0	147	16	21	16	45	1.85
42918301--42918428	56	2.4	53	82	10	138	27	19	28	24	1.98
42918766--42918805	17	2.4	17	91	0	71	42	22	7	27	1.80
42920440--42920573	50	2.6	51	82	6	175	29	23	16	30	1.96
42920504--42920641	68	2.0	68	94	0	240	28	26	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42925071--42925280	40	5.3	39	87	5	233	24	21	28	25	1.99
42925018--42925280	120	2.2	120	81	4	300	25	21	27	25	1.99
42925071--42925315	80	3.1	80	81	3	228	25	21	28	24	1.99
42931093--42931161	33	2.1	33	100	0	138	18	17	24	39	1.92
42931154--42931350	49	3.8	50	83	5	198	21	27	22	28	1.99
42940094--42940134	19	2.2	19	100	0	82	36	4	14	43	1.67
42941088--42941213	46	2.7	47	79	10	150	42	7	3	46	1.49
42941088--42941212	45	2.7	45	81	6	160	42	8	3	46	1.49
42945214--42945242	15	1.9	15	100	0	58	41	6	6	44	1.58
42945429--42945453	13	1.9	13	100	0	50	12	24	32	32	1.91
42946996--42947034	16	2.4	16	100	0	78	46	0	12	41	1.42
42947155--42947188	18	1.9	18	88	5	52	47	0	0	52	1.00
42947312--42947366	21	2.7	20	77	5	56	9	10	16	63	1.51
42960293--42960412	36	3.3	36	75	8	109	43	28	11	16	1.83
42961853--42961884	3	10.7	3	100	0	64	68	31	0	0	0.90
42962673--42962721	25	2.0	25	84	8	64	40	0	14	44	1.45
42963807--42963900	49	1.9	49	84	4	127	47	6	21	24	1.73
42976841--42976871	10	3.1	10	90	0	53	3	9	0	87	0.66
42982227--42982312	44	2.0	44	88	4	129	30	22	20	26	1.98
42982241--42983315	143	7.5	143	86	0	1387	27	22	20	29	1.98
42982241--42983310	429	2.5	429	87	0	1539	27	22	20	30	1.98
42982948--42983170	44	4.8	45	70	15	141	25	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42989486--42989544	30	2.0	30	93	0	100	35	23	16	23	1.95
42991312--42991419	40	2.7	39	86	10	141	32	0	0	66	0.98
42991374--42991402	11	2.5	12	94	5	51	41	0	0	58	0.98
42991395--42991433	9	4.3	9	83	9	53	25	0	2	71	0.98
42991395--42991428	17	2.0	17	94	0	59	20	0	2	76	0.92
42992997--42993093	50	1.9	53	83	8	130	56	6	7	29	1.51
43003743--43003785	18	2.4	18	92	0	68	25	9	25	39	1.85
43009590--43009637	22	2.3	21	85	7	62	27	4	8	60	1.44
43011409--43011438	14	2.1	14	93	0	51	40	0	43	16	1.48
43018682--43018907	111	2.0	111	96	0	416	22	25	18	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203