genome.fa.s17.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  96  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30381799--30381831	16	2.1	16	94	0	57	36	3	36	24	1.71
30381959--30382002	16	2.8	16	82	10	54	50	2	0	47	1.13
30381996--30382183	61	3.1	61	70	11	206	48	7	1	42	1.41
30381964--30382256	120	2.4	121	95	1	518	49	5	2	42	1.38
30382101--30382135	18	2.0	17	88	5	52	54	0	0	45	0.99
30382297--30382357	28	2.2	28	85	5	81	49	3	1	45	1.28
30382273--30382478	90	2.3	90	86	3	270	46	3	4	45	1.41
30387224--30387263	8	5.2	8	82	11	57	62	25	0	12	1.30
30393189--30393222	8	4.5	8	85	14	54	35	0	26	38	1.57
30401966--30402255	50	5.7	50	81	7	284	27	23	27	21	1.99
30401972--30402206	99	2.3	104	86	6	311	26	24	27	21	1.99
30406504--30406793	50	5.7	50	81	7	284	27	23	27	21	1.99
30406510--30406744	99	2.3	104	86	6	311	26	24	27	21	1.99
30411040--30411082	20	2.2	20	100	0	86	32	25	13	27	1.94
30420335--30420519	40	4.6	39	82	7	180	24	22	27	25	2.00
30420335--30420519	79	2.3	81	82	9	220	24	22	27	25	2.00
30420388--30420552	79	2.1	79	82	8	194	26	21	27	25	1.99
30437804--30437854	7	7.4	7	85	10	61	3	0	39	56	1.18
30437869--30438172	96	3.2	94	88	4	394	36	3	19	40	1.68
30438205--30438497	126	2.3	125	88	2	426	33	19	20	27	1.96
30441633--30441670	17	2.2	17	90	0	58	55	0	5	39	1.23
30441494--30441687	61	3.3	60	70	17	163	45	6	5	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30441670--30441758	34	2.8	33	81	13	98	43	5	4	46	1.47
30442182--30442223	18	2.3	18	87	0	57	45	7	28	19	1.76
30442842--30442870	7	4.1	7	100	0	58	58	13	0	27	1.36
30443989--30444052	23	3.0	21	86	10	94	43	0	32	23	1.54
30446575--30446838	40	6.7	40	89	5	360	25	27	21	25	1.99
30455378--30455445	29	2.3	29	85	5	93	27	30	13	27	1.94
30455267--30455594	174	1.9	174	97	0	620	30	24	14	30	1.95
30455547--30455625	29	2.7	30	82	13	110	29	30	15	25	1.96
30461339--30461378	18	2.2	18	90	0	62	17	37	0	45	1.49
30473458--30473556	40	2.5	40	86	3	110	33	19	26	21	1.97
30484763--30484801	20	2.0	20	100	0	78	23	30	20	25	1.98
30485117--30485146	16	1.9	15	93	6	51	46	0	13	40	1.43
30485936--30486005	29	2.4	29	87	0	95	38	12	27	21	1.90
30485991--30486064	29	2.5	29	84	2	94	44	9	28	17	1.80
30485934--30486152	30	7.4	31	77	10	167	39	13	24	22	1.90
30486050--30486183	59	2.3	59	83	6	173	38	11	23	26	1.88
30491803--30491874	34	2.1	34	100	0	144	31	8	16	43	1.78
30503445--30503487	22	2.0	22	95	0	77	37	16	6	39	1.75
30508134--30508404	140	1.9	138	87	1	398	44	9	7	38	1.65
30509851--30509931	39	2.2	36	80	6	90	35	16	23	24	1.94
30510065--30510089	12	2.1	12	100	0	50	48	8	0	44	1.32
30511994--30512454	76	6.2	76	76	5	381	41	16	20	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30512227--30512357	65	2.0	65	81	0	154	41	19	19	19	1.91
30512152--30512430	140	2.0	140	85	1	380	41	18	19	20	1.90
30516883--30516923	17	2.4	18	80	19	52	53	0	4	41	1.22
30517234--30517347	53	2.2	52	88	3	165	48	1	14	35	1.54
30518695--30518806	56	2.0	56	100	0	224	26	12	28	32	1.93
30526409--30526438	15	1.9	16	93	6	53	66	0	0	33	0.92
30528274--30528319	23	2.0	23	95	0	83	32	17	23	26	1.97
30529399--30529555	41	3.9	41	84	3	201	19	21	29	29	1.97
30529961--30529993	14	2.3	15	89	5	50	33	0	30	36	1.58
30530235--30530292	28	2.1	28	86	0	80	12	0	44	43	1.41
30531651--30531677	5	5.4	5	100	0	54	81	0	0	18	0.69
30531651--30531932	142	2.0	142	99	0	555	45	14	7	32	1.74
30533688--30533888	43	4.7	43	83	4	244	24	16	31	26	1.97
30539628--30539679	23	2.3	23	89	0	77	32	1	13	51	1.52
30550906--30550931	4	6.5	4	100	0	52	73	0	0	26	0.84
30562214--30562273	14	4.3	14	72	6	59	76	5	1	16	1.04
30562216--30562277	27	2.3	26	83	8	72	75	4	1	17	1.05
30565526--30565558	13	2.4	14	90	5	50	66	0	3	30	1.06
30565542--30565590	21	2.3	20	80	10	53	63	2	4	30	1.24
30566720--30566770	22	2.3	22	83	6	59	50	37	0	11	1.39
30588245--30588506	39	6.7	40	88	7	337	24	27	22	25	2.00
30602165--30602190	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30610791--30610834	20	2.2	20	91	0	70	34	4	18	43	1.70
30613188--30613389	101	2.0	101	93	0	341	32	17	8	41	1.81
30618868--30618893	12	2.2	12	100	0	52	11	15	15	57	1.65
30629350--30629473	27	4.6	27	93	2	140	30	28	13	27	1.94
30629350--30629473	55	2.3	54	90	1	185	30	28	13	27	1.94
30633080--30633149	27	2.6	27	90	0	104	20	15	35	28	1.93
30633211--30633322	52	2.1	53	90	1	172	18	18	32	30	1.95
30634263--30634491	53	4.5	52	78	14	237	16	19	23	41	1.90
30634306--30634546	95	2.5	96	86	4	335	17	20	22	39	1.92
30634359--30634440	42	2.0	41	92	2	137	15	23	24	36	1.94
30635855--30636011	40	3.9	40	88	1	217	20	31	18	29	1.96
30635879--30635942	20	3.2	20	66	16	51	17	34	17	31	1.93
30635939--30636004	20	3.3	20	65	23	57	19	33	18	28	1.95
30636015--30636090	20	3.8	20	70	13	57	14	31	23	30	1.94
30636005--30636104	40	2.5	39	75	15	105	15	32	22	31	1.94
30639700--30639724	12	2.1	12	100	0	50	28	24	0	48	1.52
30640170--30640292	54	2.3	54	82	4	140	26	24	29	20	1.99
30640235--30640333	42	2.4	42	78	10	112	26	21	31	21	1.98
30651128--30651206	5	15.8	5	68	5	52	55	15	20	8	1.66
30662303--30662447	51	2.8	51	76	8	159	32	28	14	24	1.94
30664424--30664600	89	2.0	89	97	0	336	34	20	11	32	1.89
30666466--30666511	23	2.0	23	95	0	83	30	19	26	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30668177--30668208	16	2.0	16	93	0	55	25	15	0	59	1.36
30668432--30668571	50	2.8	49	85	4	190	32	28	15	23	1.95
30671795--30671829	17	2.1	17	94	0	61	37	5	20	37	1.76
30674533--30674844	153	2.0	154	90	3	495	33	14	14	37	1.87
30678019--30678048	14	2.1	15	93	6	53	86	0	0	13	0.57
30692166--30692653	243	2.0	243	97	0	931	37	23	6	32	1.80
30693086--30693121	18	2.0	18	100	0	72	27	22	11	38	1.88
30696512--30696546	18	1.9	18	88	11	54	40	25	0	34	1.56
30696562--30696586	12	2.1	12	100	0	50	40	8	8	44	1.63
30703288--30703388	49	2.1	49	83	7	125	36	17	18	26	1.94
30703366--30703459	47	2.0	48	83	6	120	21	15	23	39	1.92
30706454--30706497	22	2.0	23	86	4	63	50	0	20	29	1.49
30706517--30706610	42	2.2	44	81	7	113	61	2	9	26	1.38
30706544--30706608	21	3.1	21	76	17	64	63	1	7	27	1.31
30706615--30706696	5	15.2	5	78	12	65	59	0	20	19	1.37
30706615--30706696	11	7.5	11	73	11	62	59	0	20	19	1.37
30706615--30706696	16	5.1	16	79	5	76	59	0	20	19	1.37
30710451--30710778	47	6.8	47	83	7	349	22	24	20	32	1.98
30710451--30710779	97	3.4	95	83	8	389	22	24	20	33	1.97
30710450--30710778	144	2.3	143	83	6	396	22	24	20	32	1.98
30713728--30713784	25	2.3	25	87	6	80	33	21	21	24	1.97
30722532--30722585	24	2.3	23	84	9	65	38	1	46	12	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30727533--30727590	21	2.9	21	75	12	59	51	6	6	34	1.55
30732485--30732644	40	4.0	40	81	2	153	35	16	30	18	1.93
30738274--30738418	20	7.3	20	66	10	91	12	34	17	35	1.88
30738258--30738486	40	5.8	40	83	2	282	13	34	17	34	1.89
30738258--30738486	79	2.9	80	86	1	291	13	34	17	34	1.89
30754472--30754733	129	2.0	129	91	2	420	38	19	14	27	1.90
30755074--30755213	25	5.6	25	76	3	138	30	16	19	34	1.94
30756595--30756620	11	2.4	11	100	0	52	15	19	0	65	1.27
30759685--30760173	161	3.0	163	90	2	786	38	19	16	25	1.92
30762649--30762899	129	1.9	129	89	1	387	39	21	11	26	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203