genome.fa.s17.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  47  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15284391--15284431	14	2.9	15	85	7	50	31	17	0	51	1.46
15291455--15291549	48	2.0	48	91	0	154	32	4	38	24	1.74
15299382--15299502	43	2.7	43	86	7	170	10	14	9	64	1.49
15299382--15299503	47	2.7	45	88	7	194	10	14	9	64	1.49
15300032--15300127	31	3.1	31	95	3	174	45	13	9	31	1.75
15300848--15300897	25	2.0	25	100	0	100	24	24	16	36	1.94
15303839--15303876	3	12.7	3	100	0	76	31	0	0	68	0.90
15304601--15304651	20	2.5	21	78	15	61	31	3	1	62	1.24
15310603--15310627	3	8.3	3	100	0	50	68	0	0	32	0.90
15330561--15330723	5	32.8	5	99	0	319	40	0	0	59	0.97
15330723--15330773	24	2.1	25	85	3	68	74	3	15	5	1.16
15331689--15331828	40	3.5	40	77	10	144	25	17	25	32	1.97
15333555--15333716	46	3.6	45	87	5	220	29	22	12	34	1.92
15339567--15339620	27	2.0	27	88	0	81	33	0	1	64	1.04
15340269--15340302	17	2.0	17	88	0	50	44	2	2	50	1.32
15352411--15352447	19	2.0	18	89	5	56	29	5	2	62	1.31
15365993--15366165	53	3.3	51	79	10	179	45	14	12	27	1.81
15367939--15367968	7	4.3	7	100	0	60	33	0	0	66	0.92
15380411--15380453	22	1.9	23	90	4	70	58	11	6	23	1.57
15388670--15388733	22	2.9	22	71	0	65	29	31	20	18	1.96
15394270--15394321	26	2.0	26	92	0	86	26	23	34	15	1.94
15399437--15399498	30	2.1	30	93	0	106	37	16	29	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15403395--15403685	87	3.4	85	72	11	249	31	20	20	27	1.98
15403350--15403727	170	2.2	170	87	4	528	30	20	21	27	1.98
15410072--15410105	15	2.3	15	94	0	59	41	2	14	41	1.61
15410145--15410187	21	2.0	21	90	0	68	55	9	2	32	1.44
15410141--15410226	13	7.0	13	77	17	94	58	6	2	32	1.38
15411492--15411516	7	3.6	7	100	0	50	88	0	0	12	0.53
15414126--15414277	49	3.1	49	65	16	134	45	15	9	28	1.79
15414120--15414315	97	2.0	97	97	0	374	44	14	11	29	1.79
15415751--15416437	343	2.0	344	91	1	1092	31	21	15	31	1.94
15427387--15427460	18	4.1	18	89	5	71	62	1	0	36	1.04
15427385--15427460	36	2.0	39	82	12	97	63	1	0	35	1.03
15427449--15427492	20	2.2	20	88	4	63	56	0	0	43	0.99
15433940--15433976	18	2.1	18	100	0	74	27	24	27	21	1.99
15443854--15443939	6	14.3	6	100	0	172	50	16	0	33	1.46
15456153--15456199	22	2.1	22	96	0	85	12	42	0	44	1.42
15456874--15456906	15	2.1	16	88	5	50	45	3	0	51	1.16
15465934--15465975	15	2.7	15	85	7	57	69	0	0	30	0.89
15465934--15465975	8	5.2	8	80	8	50	69	0	0	30	0.89
15467986--15468039	24	2.2	24	86	0	72	35	3	9	51	1.52
15483616--15483643	7	4.0	7	100	0	56	71	0	0	28	0.86
15483604--15483643	21	1.9	21	85	10	55	70	2	2	25	1.13
15490540--15490582	11	3.9	11	81	0	50	11	4	6	76	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15496223--15496262	3	13.3	3	100	0	80	32	0	0	67	0.91
15496284--15496326	14	3.0	14	89	3	59	55	2	9	32	1.44
15496701--15496752	25	2.2	24	82	6	61	48	3	0	48	1.20
15499527--15499569	15	2.9	15	78	0	50	16	39	2	41	1.61
15501970--15502083	55	2.1	55	91	0	183	35	9	20	35	1.85
15502188--15502260	30	2.4	30	79	4	76	38	2	4	54	1.34
15505720--15505748	13	2.2	13	100	0	58	62	10	0	27	1.28
15508690--15508719	15	1.9	16	93	6	53	43	0	3	53	1.17
15509000--15509038	11	3.5	11	82	0	51	48	2	0	48	1.15
15509684--15509754	30	2.3	31	80	4	81	56	5	1	36	1.32
15510344--15510377	18	1.9	17	94	5	59	14	20	5	58	1.57
15513482--15513621	71	2.0	70	95	2	255	26	13	12	47	1.79
15514489--15514525	19	2.0	19	94	5	67	32	2	0	64	1.07
15521800--15521841	21	2.0	21	95	0	75	23	7	4	64	1.38
15523460--15523521	29	2.2	29	82	8	74	24	11	16	48	1.78
15527960--15528015	3	18.7	3	96	0	103	64	0	1	33	1.04
15530870--15531085	118	1.8	118	85	4	301	50	15	5	27	1.66
15544280--15544413	67	2.0	67	95	0	241	30	12	31	25	1.93
15546510--15546566	19	3.1	19	82	9	57	22	3	0	73	0.98
15546494--15546569	31	2.5	30	79	16	84	23	7	0	68	1.16
15546510--15546568	6	9.5	6	80	14	57	23	3	0	72	0.99
15559694--15559744	19	2.6	19	84	9	59	56	7	0	35	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15560597--15560731	40	3.4	40	81	5	132	40	22	17	20	1.92
15560771--15560924	41	3.8	41	97	0	290	18	24	27	29	1.98
15561211--15561260	14	3.6	14	74	15	50	22	0	40	38	1.54
15561197--15561257	28	2.2	27	85	5	77	19	0	36	44	1.51
15561227--15561279	21	2.5	22	81	9	65	20	0	39	39	1.53
15561259--15561287	15	1.9	15	100	0	58	13	0	51	34	1.42
15561536--15561564	15	1.9	15	100	0	58	13	0	51	34	1.42
15561515--15561600	36	2.4	36	84	3	111	24	0	38	37	1.56
15562593--15562631	21	1.9	20	89	5	60	28	38	5	28	1.78
15566050--15566203	42	3.7	43	80	10	183	21	16	29	32	1.96
15566989--15567015	7	3.9	7	100	0	54	55	0	0	44	0.99
15567395--15567500	40	2.7	38	80	8	113	37	19	18	23	1.94
15567395--15567530	39	3.5	39	78	4	130	37	21	19	21	1.94
15567415--15567530	40	2.9	40	82	3	110	33	22	22	21	1.97
15567562--15567684	41	3.0	41	84	9	169	17	21	30	29	1.97
15568024--15568220	14	13.9	14	68	13	89	20	0	31	46	1.55
15568082--15568221	7	19.7	7	70	11	61	20	0	32	46	1.51
15568971--15569018	16	3.0	16	87	0	78	37	6	33	22	1.80
15568974--15569026	16	3.3	15	82	10	61	37	5	32	24	1.79
15569520--15569547	14	2.0	14	100	0	56	42	0	21	35	1.53
15572335--15572910	50	11.5	50	70	2	402	32	22	21	22	1.98
15572304--15572914	100	6.1	100	92	1	929	32	23	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15577414--15577473	30	2.0	30	90	0	93	33	18	20	28	1.96
15580138--15580180	17	2.3	18	80	15	52	79	0	13	6	0.93
15585038--15585188	23	6.7	23	85	2	200	20	17	21	40	1.91
15585360--15585401	19	2.2	19	91	0	66	45	0	19	35	1.50
15589635--15589706	24	3.0	23	76	15	67	36	5	0	58	1.22
15590158--15590201	3	14.7	3	90	0	52	43	0	56	0	0.99
15590158--15590207	24	2.1	24	92	0	82	46	0	54	0	1.00
15591721--15591827	40	2.7	40	80	2	108	39	19	6	34	1.78
15593915--15593957	21	2.0	21	100	0	86	53	0	32	13	1.41
15593964--15594018	29	1.9	29	85	3	76	47	9	14	29	1.75
15601731--15601769	19	2.0	21	90	10	64	58	0	0	41	0.98
15608003--15608143	68	2.1	68	93	0	237	36	12	23	27	1.90
15619626--15619668	18	2.5	17	85	14	54	55	0	0	44	0.99
15622910--15622940	14	2.2	14	94	0	53	38	0	12	48	1.42
15625116--15625213	23	4.3	23	90	2	162	31	26	21	20	1.98
15625123--15625211	45	2.0	45	95	0	160	31	26	22	19	1.97
15632488--15632585	23	4.3	23	90	2	162	31	26	21	20	1.98
15632495--15632583	45	2.0	45	95	0	160	31	26	22	19	1.97
15635436--15635462	3	9.0	3	100	0	54	66	0	0	33	0.92
15639468--15639622	36	4.0	36	78	18	177	29	20	14	35	1.93
15639504--15639658	46	3.6	46	76	19	188	29	21	12	35	1.91
15639425--15639658	82	2.9	82	91	4	377	29	21	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15647146--15647218	36	2.0	36	94	0	128	28	21	15	34	1.94
15647911--15648027	59	2.0	59	100	0	234	54	11	8	24	1.64
15648475--15648582	33	3.2	32	66	19	92	33	20	1	44	1.62
15648457--15648594	70	2.0	70	98	0	267	33	18	1	47	1.57
15649982--15650006	12	2.1	12	100	0	50	8	40	16	36	1.77
15650129--15650472	35	9.5	35	79	9	305	38	15	22	23	1.92
15650129--15650467	73	4.7	71	84	3	306	38	15	22	24	1.92
15650129--15650476	108	3.2	108	81	7	384	38	15	22	24	1.92
15650129--15650460	181	1.8	183	86	3	483	38	15	21	24	1.92
15655669--15655748	39	2.1	39	92	0	133	41	22	11	25	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203