genome.fa.s17.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  184  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58455117--58455236	20	6.4	20	68	24	59	60	0	5	33	1.27
58455130--58455197	15	4.9	15	83	16	85	63	0	7	29	1.21
58455077--58455177	35	2.8	35	80	15	93	61	3	3	30	1.32
58455092--58455187	11	9.0	10	72	22	63	63	2	4	30	1.24
58457078--58457128	16	3.2	16	94	0	84	54	11	11	21	1.68
58458045--58458078	16	2.1	17	94	5	61	23	11	0	64	1.26
58462253--58462420	16	10.7	15	67	24	80	26	4	1	67	1.19
58462255--58462398	8	15.7	9	67	24	54	27	4	0	68	1.13
58462329--58462418	27	3.4	27	92	1	146	23	3	3	70	1.18
58462300--58462420	54	2.3	54	84	4	156	25	3	2	68	1.17
58462245--58462390	39	3.5	42	76	20	123	28	4	0	66	1.17
58462253--58462420	10	17.0	10	69	22	99	26	4	1	67	1.19
58462253--58462398	23	6.9	20	71	17	91	27	4	0	67	1.13
58462317--58462418	6	16.0	6	70	18	64	23	2	2	70	1.15
58463143--58463194	20	2.7	19	80	11	61	73	3	1	21	1.10
58470671--58470695	12	2.1	12	100	0	50	48	8	0	44	1.32
58470773--58470811	21	1.9	20	94	5	69	33	10	25	30	1.89
58471618--58471702	6	15.2	6	77	18	69	48	17	2	31	1.60
58471615--58471659	20	2.2	21	96	4	83	46	20	0	33	1.51
58471614--58471686	11	6.9	11	75	16	66	49	16	2	31	1.60
58471958--58471986	14	2.1	14	100	0	58	27	13	6	51	1.66
58473486--58473513	13	2.2	13	100	0	56	46	0	7	46	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58476156--58476376	40	5.6	41	85	8	307	24	22	26	25	2.00
58476604--58476645	22	1.9	22	85	9	59	33	9	14	42	1.78
58479605--58479782	40	4.5	40	92	3	272	24	28	23	24	2.00
58483346--58483487	47	3.0	47	89	3	207	29	11	14	45	1.79
58484308--58484431	45	2.8	44	88	3	185	24	22	27	25	2.00
58490618--58490765	48	3.1	48	88	2	219	30	12	14	42	1.83
58491589--58491752	45	3.7	44	87	5	208	23	21	28	26	1.99
58495972--58496140	40	4.3	39	90	5	250	24	21	27	26	1.99
58495972--58496173	80	2.5	80	85	4	232	25	20	27	25	1.99
58497277--58497392	61	1.9	61	96	1	216	46	6	19	26	1.75
58500073--58500185	25	4.6	25	77	1	93	19	27	20	32	1.97
58501039--58501095	30	1.9	30	92	0	96	26	28	28	17	1.98
58506262--58506386	40	3.1	40	89	2	180	35	16	16	31	1.92
58507737--58507775	20	2.0	20	90	10	62	15	23	5	56	1.59
58507749--58507788	12	3.3	12	92	0	62	20	22	7	50	1.73
58507988--58508229	50	4.7	50	78	4	209	24	28	19	27	1.99
58532807--58532864	22	2.4	25	80	11	68	41	1	1	55	1.20
58534552--58534579	8	3.5	8	100	0	56	25	0	0	75	0.81
58546920--58546974	24	2.3	24	84	9	69	47	3	0	49	1.19
58550857--58550935	37	2.1	37	85	0	104	26	32	17	22	1.96
58551079--58551181	47	2.2	47	80	3	118	26	33	11	29	1.91
58558362--58558436	23	3.3	23	82	0	105	21	21	25	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58559626--58559803	49	3.6	49	96	0	320	26	15	27	29	1.96
58570771--58570827	26	2.0	29	80	12	66	42	5	1	50	1.35
58578905--58578934	12	2.5	12	94	0	51	6	30	40	23	1.80
58580151--58580242	25	3.7	25	81	8	91	25	21	23	29	1.99
58580197--58580253	25	2.3	25	90	0	87	29	24	19	26	1.98
58587781--58587852	24	2.9	25	85	4	101	31	19	16	31	1.94
58608080--58608120	21	2.0	21	81	18	50	31	19	26	21	1.97
58611611--58611671	32	1.9	32	83	6	79	52	0	6	40	1.27
58617091--58617131	6	6.8	6	88	0	55	17	17	0	65	1.27
58621900--58621941	21	2.0	21	85	0	57	28	2	21	47	1.63
58627046--58627079	11	3.1	11	95	0	59	67	0	0	32	0.91
58634573--58634722	46	3.2	46	78	11	135	31	26	16	26	1.96
58638692--58638720	7	4.3	7	95	4	51	27	27	0	44	1.54
58645006--58645050	22	2.0	22	83	8	56	64	0	2	33	1.06
58654268--58654323	26	2.2	26	83	0	67	26	10	19	42	1.84
58654468--58654516	6	8.2	6	81	0	62	20	20	0	59	1.38
58654467--58654516	18	2.8	18	84	0	73	22	20	0	58	1.40
58657606--58657955	177	2.0	177	95	0	628	28	10	16	44	1.81
58661345--58661468	55	2.2	56	89	1	196	37	24	16	21	1.93
58661465--58661549	30	2.8	30	80	0	107	35	24	18	21	1.96
58666635--58666774	13	10.5	13	66	17	63	45	4	15	35	1.66
58666648--58666719	28	2.6	28	79	14	78	48	2	12	36	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58666628--58666759	68	2.0	67	89	1	201	49	3	13	34	1.58
58666685--58666794	40	2.8	40	81	12	136	47	3	17	31	1.65
58692936--58692971	16	2.3	16	95	4	65	22	5	30	41	1.76
58700327--58700440	51	2.3	51	89	1	167	16	17	32	33	1.93
58703327--58703361	18	2.0	17	88	5	52	45	0	0	54	0.99
58703597--58703664	16	4.2	16	96	0	127	36	36	0	26	1.57
58710141--58710172	16	2.0	16	93	0	55	25	15	0	59	1.36
58710400--58710590	51	3.8	51	75	11	203	30	28	17	24	1.97
58710398--58710582	101	1.8	102	90	3	302	30	27	17	24	1.97
58714521--58715091	288	2.0	287	94	0	989	37	15	12	33	1.86
58731933--58731983	26	2.0	26	96	0	93	41	3	5	49	1.45
58732632--58732715	44	2.0	43	84	15	113	59	3	4	32	1.35
58733272--58733301	14	2.1	14	93	0	51	36	13	6	43	1.70
58735089--58735253	90	1.8	90	96	0	303	23	6	18	51	1.68
58735184--58735313	60	2.2	60	92	0	215	21	6	18	53	1.66
58737080--58737212	66	2.0	66	98	0	257	36	9	15	38	1.79
58744200--58744308	41	2.6	41	95	1	191	26	21	29	22	1.99
58749872--58749906	15	2.4	15	90	4	54	54	0	0	45	0.99
58749991--58750034	22	2.0	22	90	0	70	9	18	27	45	1.79
58750124--58750371	42	5.9	42	93	2	417	35	22	19	22	1.96
58750124--58750371	85	2.9	85	96	1	446	35	22	19	22	1.96
58756132--58756365	9	25.8	9	75	6	204	31	2	16	49	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58759203--58759254	25	2.0	26	92	3	88	50	21	1	26	1.59
58760013--58760803	114	6.9	114	94	0	1348	25	26	15	32	1.96
58762834--58762892	29	2.0	30	86	3	84	30	6	13	49	1.68
58765535--58765575	20	2.0	20	85	0	55	41	17	17	24	1.89
58767443--58767494	10	4.7	12	81	13	51	13	19	1	65	1.36
58768491--58768557	33	2.0	33	85	0	89	13	8	5	71	1.29
58772775--58772817	23	1.9	22	86	13	61	37	0	23	39	1.55
58773721--58773782	25	2.5	24	84	5	70	24	24	20	30	1.99
58773985--58774034	25	2.0	25	84	7	66	40	0	20	40	1.52
58790709--58790759	21	2.4	21	84	9	68	31	27	5	35	1.81
58793280--58793329	27	1.9	25	84	8	64	22	2	2	74	1.03
58794148--58794191	22	1.9	24	86	9	65	40	13	2	43	1.57
58794274--58794336	33	1.9	33	90	3	101	31	25	3	39	1.71
58797310--58797351	21	2.0	21	85	0	57	40	7	14	38	1.73
58797564--58797609	22	2.0	23	84	12	60	39	15	4	41	1.67
58799836--58799878	9	5.1	9	83	16	65	32	11	11	44	1.77
58799846--58799882	15	2.5	15	100	0	74	35	13	13	37	1.84
58808554--58808627	36	2.0	36	82	7	87	50	1	0	48	1.09
58814406--58814438	12	2.6	13	85	9	50	27	36	24	12	1.91
58815475--58815548	25	3.0	25	87	0	103	37	18	25	17	1.93
58818861--58818899	20	2.0	20	94	0	69	58	10	0	30	1.31
58819851--58820476	208	3.0	208	99	0	1225	28	15	28	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58821133--58821296	50	3.3	50	76	0	184	25	17	22	34	1.96
58821041--58821295	100	2.6	100	87	3	351	25	18	22	33	1.97
58821355--58821638	85	3.3	85	68	9	250	28	23	20	27	1.99
58821443--58821727	89	3.2	89	67	6	240	27	23	20	28	1.99
58821348--58821731	174	2.2	174	91	0	617	27	23	20	27	1.99
58821522--58822362	218	3.9	218	90	1	1222	26	24	19	28	1.99
58821361--58821812	174	2.6	174	85	2	498	27	23	20	27	1.99
58821884--58821994	44	2.5	45	82	10	131	26	29	22	21	1.99
58821522--58822331	434	1.9	435	89	1	1264	27	24	20	28	1.99
58822302--58822775	44	10.8	44	64	16	135	24	24	20	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203