genome.fa.s17.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  142  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45324590--45324642	25	2.2	24	83	10	63	22	26	15	35	1.93
45326631--45326670	19	2.1	19	100	0	80	37	5	15	42	1.68
45327387--45327485	44	2.2	44	94	0	171	61	2	31	5	1.29
45327803--45327850	22	2.2	22	100	0	96	39	8	33	18	1.81
45328722--45328794	28	2.7	27	91	4	128	63	12	0	24	1.29
45328734--45328783	15	3.5	15	70	10	50	58	10	0	32	1.31
45342164--45342267	3	34.7	3	70	12	54	68	1	6	23	1.24
45342181--45342242	27	2.3	28	81	18	78	69	3	8	19	1.28
45342211--45342297	11	7.8	11	71	19	56	70	1	3	25	1.10
45342250--45342287	16	2.3	17	86	4	51	68	0	0	31	0.90
45342187--45342294	49	2.2	48	77	12	114	69	1	4	24	1.17
45342211--45342293	21	3.8	22	78	13	82	69	1	3	25	1.11
45345525--45345570	21	2.1	22	92	4	76	54	0	0	45	0.99
45348215--45348411	48	4.1	48	80	2	234	22	28	21	26	1.99
45349723--45351659	464	4.2	464	89	1	2669	23	28	20	27	1.99
45352300--45352440	39	3.6	39	86	1	185	44	21	3	30	1.69
45357713--45357820	46	2.4	43	80	13	121	36	21	16	25	1.94
45357826--45358016	51	3.8	51	80	8	246	29	28	17	24	1.97
45357824--45358008	101	1.8	102	92	3	320	29	28	18	23	1.98
45359528--45359571	21	2.1	21	82	0	52	27	4	4	63	1.33
45366082--45366142	26	2.3	26	83	5	79	36	22	24	16	1.94
45368455--45368507	24	2.2	25	86	3	72	49	13	5	32	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45369554--45369612	27	2.2	27	93	0	100	30	15	5	49	1.66
45371253--45371277	13	1.9	13	100	0	50	60	0	0	40	0.97
45371260--45371332	36	2.0	36	82	10	87	32	1	0	65	1.01
45371286--45371338	26	1.9	27	88	11	81	30	1	0	67	1.01
45371804--45371976	74	2.3	74	89	2	258	30	21	13	33	1.93
45381739--45381877	61	2.3	61	87	0	188	28	13	26	30	1.94
45381918--45381994	29	2.7	29	80	11	79	32	19	23	24	1.97
45388847--45388882	10	3.5	10	88	3	54	36	0	19	44	1.51
45388842--45388874	15	2.1	16	88	5	50	36	0	24	39	1.56
45388849--45388895	21	2.3	20	85	3	58	38	2	17	42	1.61
45396331--45396375	23	2.0	23	90	0	72	31	17	2	48	1.59
45402567--45402676	49	2.3	49	85	7	145	50	1	4	43	1.33
45412285--45412475	106	1.8	106	85	7	273	48	5	2	42	1.40
45414259--45414425	84	2.0	84	98	0	325	39	14	28	17	1.89
45416355--45416401	16	2.9	16	90	0	76	34	27	2	36	1.69
45416990--45417104	30	4.0	27	75	18	99	21	1	16	60	1.45
45417010--45417416	5	81.4	5	68	25	142	22	1	18	57	1.47
45417037--45417274	40	6.2	40	78	14	166	21	0	18	58	1.44
45417040--45417280	70	3.4	70	85	8	289	21	0	19	58	1.44
45417021--45417292	110	2.5	110	81	11	301	21	0	18	58	1.43
45417044--45417363	70	4.9	64	77	15	193	22	1	18	57	1.47
45417223--45417415	43	4.4	45	70	22	135	23	1	18	56	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45417202--45417309	53	2.2	50	81	9	123	22	0	16	60	1.42
45417384--45417415	9	3.7	9	91	8	57	21	0	21	56	1.43
45420706--45420739	13	2.5	14	85	9	52	17	0	23	58	1.38
45427702--45427992	29	10.0	29	72	11	218	24	27	11	36	1.90
45427713--45428018	59	5.2	59	76	10	272	24	28	11	35	1.90
45427773--45428018	88	2.8	87	88	3	368	24	29	10	35	1.89
45432250--45432320	5	13.2	6	77	16	59	49	14	2	33	1.58
45432246--45432291	20	2.2	21	92	7	85	47	19	0	32	1.50
45432246--45432292	11	4.5	11	87	12	73	46	19	0	34	1.50
45432273--45432328	27	2.1	27	96	0	103	53	8	7	30	1.59
45432311--45432347	18	2.1	18	89	0	56	59	5	10	24	1.52
45432835--45432865	14	2.1	14	94	5	53	83	0	6	9	0.79
45435409--45435698	29	9.9	29	69	9	187	24	26	12	37	1.90
45435421--45435724	116	2.6	117	88	2	441	24	26	11	37	1.90
45435514--45435724	29	7.2	29	73	10	171	24	27	12	36	1.91
45435421--45435724	59	5.2	59	86	2	425	24	26	11	37	1.90
45442800--45442845	18	2.5	18	83	13	58	71	6	0	21	1.08
45442984--45443025	15	2.9	14	85	7	57	21	4	2	71	1.16
45442990--45443047	22	2.6	22	79	12	57	25	1	5	67	1.21
45443052--45443078	7	3.9	7	100	0	54	40	0	0	59	0.98
45445257--45445333	36	2.1	37	85	7	104	44	1	22	32	1.61
45445528--45445596	23	3.0	24	93	4	115	23	20	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45447940--45448546	31	19.8	32	71	15	303	31	6	17	43	1.76
45447905--45448601	61	11.4	61	74	8	439	32	7	17	43	1.76
45447926--45448563	92	6.9	92	91	0	900	32	6	17	43	1.76
45460888--45460966	32	2.5	31	78	10	88	55	2	0	41	1.13
45461354--45461753	99	4.0	99	97	0	730	15	9	35	39	1.80
45466451--45466497	20	2.3	21	78	10	53	61	23	4	10	1.46
45467457--45467536	10	8.4	9	74	15	54	25	5	2	67	1.23
45467449--45467507	20	3.1	18	70	27	50	22	8	1	67	1.26
45467461--45467535	3	24.7	3	72	12	55	25	5	2	66	1.26
45471168--45471205	13	2.9	13	85	14	60	31	10	10	47	1.72
45478519--45478543	9	2.8	9	100	0	50	60	0	0	40	0.97
45478802--45478861	20	3.0	20	80	0	66	58	11	3	26	1.49
45478881--45478914	17	1.9	18	88	5	52	55	14	2	26	1.53
45478922--45478976	20	2.8	21	74	17	55	27	1	7	63	1.31
45478963--45479000	20	2.0	20	85	10	53	42	0	2	55	1.14
45483553--45483651	23	4.3	23	90	0	162	32	24	20	23	1.98
45498067--45498683	50	12.4	50	72	3	404	30	22	21	25	1.98
45498090--45498621	99	5.4	99	80	2	311	31	22	20	26	1.98
45498358--45498681	99	3.3	98	85	2	425	30	21	20	26	1.98
45498090--45498620	249	2.1	247	83	3	674	31	22	19	26	1.98
45498787--45498899	44	2.6	44	97	0	208	25	22	23	28	1.99
45501260--45501294	15	2.3	15	95	0	61	62	11	5	20	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45502169--45502221	21	2.4	23	78	9	67	5	11	1	81	0.94
45504799--45505026	113	2.0	113	94	0	402	33	14	17	35	1.90
45505609--45505661	21	2.5	21	90	0	79	30	35	9	24	1.87
45512610--45512649	18	2.2	19	86	4	55	45	5	30	20	1.72
45522659--45522698	16	2.5	16	87	0	53	42	5	2	50	1.37
45522672--45522733	22	2.7	23	85	5	81	46	0	1	51	1.10
45541754--45541807	20	2.7	20	88	0	81	24	29	16	29	1.97
45545324--45545378	20	2.8	20	88	0	83	25	29	16	29	1.97
45545717--45545904	45	4.2	45	93	0	313	38	15	20	25	1.92
45548758--45548817	29	2.1	29	87	0	84	30	8	15	46	1.74
45549770--45549829	29	2.1	29	87	0	84	30	8	15	46	1.74
45550608--45550657	15	3.3	15	72	25	50	46	10	24	20	1.81
45551844--45551873	13	2.3	13	94	0	51	50	0	3	46	1.18
45557678--45557755	39	2.0	39	100	0	156	30	20	17	30	1.96
45558281--45558331	24	2.1	25	81	3	59	37	0	35	27	1.57
45558991--45559121	26	5.0	27	84	6	164	29	20	24	25	1.99
45558988--45559121	53	2.5	53	86	4	175	29	20	24	25	1.99
45559142--45559224	24	3.5	24	83	4	89	21	7	22	48	1.75
45559338--45559389	26	2.0	26	96	0	95	17	19	19	44	1.87
45559395--45559641	64	3.9	63	81	2	233	20	20	22	36	1.95
45559426--45559661	96	2.5	95	83	4	278	20	19	21	38	1.94
45559395--45559663	32	8.4	33	79	6	209	20	20	21	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45559653--45559714	22	2.8	21	75	4	61	17	20	17	43	1.88
45559712--45559762	26	2.0	26	84	0	66	19	19	19	41	1.91
45561582--45561661	40	2.0	40	90	0	124	31	18	16	33	1.93
45571074--45571148	14	5.5	13	70	17	53	58	0	0	41	0.98
45571075--45571153	29	2.9	28	71	26	78	59	0	0	40	0.97
45572865--45572963	19	5.3	18	70	15	60	52	4	2	41	1.32
45572903--45572972	37	1.9	36	82	8	88	54	4	1	40	1.29
45573382--45573421	19	2.1	19	85	0	53	35	2	10	52	1.48
45576677--45576834	43	3.7	43	88	0	226	26	30	18	24	1.98
45576677--45576900	86	2.6	86	77	0	207	28	29	16	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203