genome.fa.s17.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  163  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51630019--51630422	18	22.7	18	69	12	111	31	12	11	44	1.77
51630022--51630485	17	26.2	17	68	13	125	31	12	11	44	1.78
51632200--51632224	4	6.2	4	100	0	50	24	24	0	52	1.48
51639602--51639673	1	72.0	1	74	0	63	87	11	1	0	0.61
51639600--51639673	8	9.1	8	88	8	114	86	12	1	0	0.63
51639602--51639673	17	4.4	17	91	7	121	87	11	1	0	0.61
51640556--51640931	74	4.8	80	82	6	244	30	17	21	31	1.96
51640642--51640867	75	2.9	81	82	7	236	31	15	20	31	1.94
51640644--51641488	74	11.0	74	83	8	828	28	17	20	33	1.96
51640561--51641450	389	2.3	377	82	11	1002	28	17	21	33	1.96
51641647--51641823	30	6.0	29	81	9	196	34	24	5	35	1.79
51641647--51641790	59	2.4	59	85	6	202	35	23	4	36	1.76
51642146--51642204	3	18.0	3	86	13	73	66	0	33	0	0.92
51642146--51642204	13	4.5	13	86	14	77	66	0	33	0	0.92
51642146--51642204	10	6.3	10	79	13	72	66	0	33	0	0.92
51642220--51642263	21	2.1	21	87	4	63	20	43	27	9	1.82
51642568--51642647	16	5.0	16	81	13	67	85	1	8	5	0.80
51642577--51642657	15	5.4	14	79	18	74	85	0	12	2	0.70
51642595--51642648	13	4.0	13	86	13	74	85	0	14	0	0.61
51642579--51642658	28	2.8	28	86	9	99	83	0	13	2	0.74
51642594--51642648	7	8.0	7	84	11	78	85	0	14	0	0.60
51642577--51642657	13	6.3	13	83	14	73	85	0	12	2	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51642577--51642647	1	71.0	1	74	0	61	87	0	9	2	0.65
51642577--51642657	10	7.7	10	79	19	69	85	0	12	2	0.70
51642731--51642907	30	6.0	29	81	9	196	34	24	5	35	1.79
51642731--51642874	59	2.4	59	85	6	202	35	23	4	36	1.76
51643424--51644139	18	39.5	18	67	15	282	32	11	11	44	1.76
51643417--51644139	17	39.9	17	67	14	202	32	11	11	45	1.76
51643415--51644139	35	20.1	35	66	14	174	32	11	11	44	1.76
51643602--51643648	19	2.5	19	86	10	62	38	12	6	42	1.69
51645337--51645371	18	1.9	18	94	0	61	37	11	22	28	1.89
51646539--51646582	18	2.6	16	83	16	61	61	2	0	36	1.09
51646944--51647008	14	4.6	14	76	7	60	13	0	33	52	1.41
51646949--51647008	21	2.9	21	69	14	52	11	0	33	55	1.36
51647074--51647347	97	2.8	96	87	6	385	42	2	15	39	1.59
51648006--51648030	11	2.3	11	100	0	50	8	12	28	52	1.66
51648054--51648087	16	2.1	16	88	0	50	50	14	17	17	1.79
51650888--51650931	21	2.1	21	91	0	70	29	20	29	20	1.98
51657040--51657209	72	2.4	72	84	4	220	25	5	12	56	1.57
51657075--51657234	71	2.2	71	76	8	155	26	4	13	55	1.56
51658571--51658618	3	16.0	3	82	0	51	29	6	37	27	1.81
51658574--51658620	12	3.9	12	88	0	67	27	8	38	25	1.85
51660341--51660381	21	2.0	21	85	0	55	12	21	36	29	1.90
51662694--51662959	140	1.9	140	92	1	453	34	11	10	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51667532--51667564	11	2.8	12	86	9	50	30	0	0	69	0.88
51667687--51667748	30	2.1	30	93	0	106	58	12	3	25	1.50
51667778--51667820	22	2.0	22	85	0	59	58	11	11	18	1.63
51672792--51672912	59	2.1	59	93	0	206	54	6	5	33	1.50
51673716--51673741	11	2.4	11	100	0	52	73	0	0	26	0.84
51680246--51680309	29	2.2	29	91	0	101	29	28	3	39	1.72
51680729--51680778	15	3.1	16	80	13	59	28	0	0	72	0.86
51680732--51680784	18	3.1	18	78	10	58	26	1	0	71	0.96
51680887--51681220	167	2.0	167	97	0	623	36	22	15	26	1.93
51685812--51685854	18	2.4	19	81	18	56	48	9	2	39	1.48
51685869--51685936	29	2.3	29	79	0	73	30	20	4	44	1.71
51691901--51691953	23	2.4	22	76	20	56	9	18	1	69	1.25
51702508--51702855	51	6.9	51	78	5	341	30	25	14	29	1.94
51702508--51702856	102	3.4	102	86	2	472	30	25	14	29	1.94
51702507--51702856	153	2.3	150	79	5	391	30	25	14	30	1.94
51704141--51704166	13	2.0	13	100	0	52	46	15	0	38	1.46
51710896--51710929	14	2.4	14	90	0	50	20	0	0	79	0.73
51714449--51714531	41	2.0	41	100	0	166	38	4	44	12	1.63
51715749--51715780	9	3.6	9	91	0	55	12	18	56	12	1.67
51716102--51716132	6	5.2	6	92	0	53	16	12	54	16	1.71
51716102--51716138	12	3.1	12	88	0	56	16	10	54	18	1.71
51718066--51718107	18	2.3	18	84	8	50	59	2	2	35	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51720359--51720394	15	2.5	14	90	4	54	63	0	0	36	0.94
51720354--51720394	14	2.6	16	88	11	59	60	2	0	36	1.10
51720359--51720396	16	2.4	16	86	8	51	65	0	0	34	0.93
51722195--51722329	39	3.4	39	74	11	116	28	27	20	23	1.99
51723898--51723925	5	5.6	5	100	0	56	60	0	0	39	0.97
51724608--51724658	16	3.3	16	76	15	54	49	3	0	47	1.20
51725481--51725529	16	3.1	16	78	0	53	36	0	30	32	1.58
51725510--51725602	45	2.1	44	87	2	132	35	5	26	32	1.79
51725764--51725798	18	2.0	17	88	5	52	54	0	0	45	0.99
51725722--51725794	27	2.7	27	76	8	76	52	2	0	45	1.15
51725683--51725958	148	1.9	149	98	0	536	46	3	2	47	1.33
51725912--51725946	18	2.0	17	88	5	52	54	0	0	45	0.99
51727068--51727102	14	2.4	14	95	4	61	65	0	25	8	1.21
51727078--51727122	19	2.5	18	82	17	58	66	0	26	6	1.16
51728074--51728116	21	2.0	21	100	0	86	23	13	9	53	1.69
51740761--51740839	40	2.0	40	100	0	158	32	10	12	44	1.76
51745281--51745411	66	2.0	66	93	0	226	32	10	20	35	1.87
51745652--51745685	16	2.1	16	89	10	52	44	0	5	50	1.26
51745663--51745807	47	3.1	47	72	16	158	44	2	3	49	1.30
51745649--51745775	44	2.8	43	73	15	123	46	2	3	47	1.34
51745773--51745835	18	3.8	18	74	23	57	47	0	1	50	1.10
51745783--51745840	16	3.7	15	86	6	80	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51745649--51745824	91	1.9	90	90	4	282	46	1	3	48	1.29
51746068--51746116	16	3.1	16	93	0	80	24	36	4	34	1.75
51756251--51756289	14	2.8	13	85	11	51	0	12	2	84	0.72
51756250--51756288	20	2.0	20	90	5	62	0	15	2	82	0.79
51760211--51760240	6	5.0	6	95	0	51	33	30	16	20	1.94
51761007--51761073	31	2.2	31	86	0	89	32	10	13	43	1.78
51763323--51763367	24	2.0	24	91	8	76	37	0	2	60	1.09
51763555--51763596	16	2.6	16	92	0	66	42	7	2	47	1.43
51763570--51763630	22	2.8	22	84	0	77	47	1	1	49	1.21
51764247--51764471	108	2.0	109	88	5	337	39	13	15	31	1.86
51764655--51764950	109	2.7	108	81	8	361	28	16	14	40	1.87
51764655--51764949	112	2.7	109	82	8	363	28	16	14	40	1.87
51764473--51764949	99	4.6	107	80	11	427	28	17	15	39	1.89
51769844--51769888	23	2.0	23	86	0	63	31	8	4	55	1.51
51774022--51774070	12	3.8	12	82	12	53	79	0	20	0	0.73
51774027--51774077	7	7.6	7	80	14	54	76	0	21	1	0.88
51774022--51774077	20	2.8	20	84	7	71	78	0	19	1	0.84
51775284--51775768	132	3.7	131	92	1	781	31	18	23	25	1.98
51775560--51775744	44	4.2	44	64	13	110	31	20	22	25	1.98
51775759--51776636	44	20.2	44	68	13	301	29	20	22	26	1.98
51775761--51776636	217	4.0	217	93	0	1389	29	20	22	27	1.98
51776844--51776956	19	5.8	19	85	4	163	38	10	15	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51776845--51776951	40	2.7	40	92	2	173	39	11	14	34	1.82
51779335--51779381	23	2.0	23	100	0	94	38	23	8	29	1.84
51784556--51784610	18	3.1	18	86	0	74	25	7	18	49	1.73
51785497--51785553	18	3.3	18	80	7	66	22	10	45	21	1.82
51788899--51788953	18	3.1	18	91	0	83	25	5	18	50	1.67
51792050--51792106	21	2.5	23	80	13	64	57	1	3	36	1.26
51793210--51793257	22	2.2	22	96	0	87	56	27	4	12	1.54
51795457--51795512	14	3.9	13	78	17	58	3	25	0	71	1.02
51796660--51796783	34	3.6	34	88	0	176	33	10	14	41	1.80
51804260--51804381	55	2.2	57	83	12	148	47	6	14	31	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203