genome.fa.s17.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  20  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6314615--6314649	12	2.6	14	91	8	56	11	8	2	77	1.10
6314912--6314989	21	3.4	23	74	8	70	26	3	30	38	1.74
6314948--6315009	21	2.9	21	82	2	79	30	3	32	33	1.74
6323717--6323769	23	2.4	22	76	20	56	9	18	1	69	1.25
6326986--6327012	10	2.7	10	100	0	54	77	7	0	14	0.97
6326986--6327024	11	3.6	11	89	3	53	79	10	0	10	0.94
6327063--6327100	13	2.9	13	92	0	67	68	0	13	18	1.21
6327595--6327645	25	2.0	25	96	0	93	17	13	31	37	1.89
6333422--6333498	39	2.0	39	97	0	145	57	10	22	10	1.62
6342218--6342251	14	2.7	12	90	9	50	17	8	0	73	1.08
6342217--6342257	13	3.0	14	92	7	75	21	12	0	65	1.25
6342296--6342339	12	3.6	12	84	3	52	13	4	6	75	1.17
6342295--6342339	13	3.5	13	87	3	65	13	4	6	75	1.15
6343331--6343418	23	3.6	23	72	19	88	50	13	4	31	1.62
6343361--6343445	28	3.2	27	67	21	72	49	15	2	32	1.57
6343330--6343445	51	2.3	51	93	1	198	50	14	3	31	1.60
6343330--6343459	51	2.6	51	88	1	136	50	14	3	32	1.59
6343948--6344039	48	1.9	48	95	0	166	19	19	30	30	1.97
6350551--6350590	18	2.2	18	86	4	53	12	27	0	60	1.33
6354141--6354198	10	5.7	10	76	11	64	29	27	13	29	1.94
6354141--6354201	20	3.0	20	83	9	79	27	26	13	32	1.93
6355570--6355596	12	2.2	12	100	0	54	77	7	0	14	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6356629--6356792	12	13.4	12	72	16	52	67	3	18	10	1.33
6356651--6356758	6	17.7	6	72	6	83	72	3	17	6	1.21
6356719--6356756	13	2.8	13	82	17	51	73	0	18	7	1.06
6356762--6356793	12	2.7	12	95	0	55	59	0	21	18	1.38
6360670--6360714	12	3.6	12	82	11	54	22	8	0	68	1.16
6360670--6360715	13	3.7	12	82	8	56	21	8	0	69	1.15
6360668--6360721	14	4.0	14	83	9	76	24	11	0	64	1.25
6360759--6360803	12	3.6	12	84	6	54	11	4	8	75	1.17
6360759--6360792	14	2.4	14	95	0	59	11	2	5	79	1.02
6364845--6364896	23	2.3	22	75	21	54	9	23	1	65	1.32
6366243--6366337	48	2.0	48	97	0	181	27	17	24	30	1.97
6366457--6366481	4	6.2	4	100	0	50	28	0	0	72	0.86
6367523--6367556	17	2.0	17	94	0	59	73	11	2	11	1.20
6367523--6367558	9	4.1	9	89	7	56	72	11	2	13	1.23
6372928--6372954	4	6.8	4	100	0	54	25	0	0	74	0.83
6382048--6382090	23	1.9	23	85	4	61	27	9	11	51	1.69
6382381--6382488	55	2.0	55	100	0	216	38	20	15	25	1.92
6395210--6395342	69	1.9	70	90	1	214	32	14	16	36	1.89
6396729--6397009	47	5.9	47	94	1	490	33	7	28	30	1.85
6396729--6397001	96	2.9	94	94	2	483	33	7	28	30	1.85
6396729--6397009	143	2.0	141	94	1	490	33	7	28	30	1.85
6396936--6397009	22	3.2	22	63	10	58	29	8	31	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6409531--6409555	12	2.1	12	100	0	50	32	0	16	52	1.44
6413464--6413516	26	2.0	26	96	0	97	45	3	32	18	1.68
6414873--6414920	13	3.4	14	82	11	53	14	8	2	75	1.13
6414888--6414931	12	3.8	12	82	14	56	9	6	4	79	1.04
6417829--6417868	18	2.2	18	86	4	53	12	27	0	60	1.33
6418927--6418984	16	3.6	16	92	2	98	22	12	5	60	1.51
6419022--6419055	12	2.8	12	100	0	68	17	0	5	76	0.98
6419025--6419066	12	3.6	12	90	6	59	14	2	7	76	1.10
6428518--6428740	40	5.6	40	83	8	235	24	27	22	25	2.00
6428518--6428741	79	2.8	77	82	8	252	24	27	22	25	2.00
6428518--6428741	39	5.7	40	85	6	262	24	27	22	25	2.00
6435129--6435190	10	5.9	10	74	10	52	33	32	3	30	1.74
6435129--6435191	21	3.0	21	88	2	90	33	33	3	30	1.74
6436029--6436055	10	2.7	10	100	0	54	77	7	0	14	0.97
6446889--6446923	18	1.9	18	88	11	54	22	20	0	57	1.41
6449816--6449870	27	2.0	27	100	0	110	18	18	18	45	1.86
6455363--6455402	14	2.7	15	84	7	55	77	5	15	2	1.04
6462691--6462724	6	5.7	6	100	0	68	17	14	50	17	1.79
6466494--6466525	14	2.4	14	90	10	50	31	3	0	65	1.08
6467147--6467194	23	2.1	23	92	0	78	31	12	20	35	1.90
6474467--6474564	14	6.9	14	69	20	53	33	2	2	62	1.18
6487882--6487911	4	7.5	4	100	0	60	50	23	0	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6492700--6492743	19	2.3	20	84	7	56	27	20	11	40	1.86
6497444--6497892	87	5.2	87	84	3	516	27	20	25	26	1.99
6497444--6497892	173	2.6	172	83	5	532	27	20	25	26	1.99
6508007--6508057	23	2.2	23	96	0	93	25	7	5	60	1.47
6515004--6515049	21	2.2	21	84	7	58	58	2	0	39	1.10
6520899--6521264	46	7.6	46	82	10	323	34	14	21	29	1.93
6520899--6521264	98	3.7	97	84	8	490	34	14	21	29	1.93
6521058--6521258	51	4.0	50	87	8	293	35	14	21	27	1.93
6520914--6521264	195	1.8	195	91	0	585	34	14	21	29	1.93
6521228--6521337	37	3.0	37	94	1	195	37	16	21	24	1.93
6527192--6527229	18	2.2	18	90	9	62	65	2	0	31	1.06
6544219--6544267	6	8.0	6	97	2	89	32	48	0	18	1.48
6560964--6561169	104	2.0	104	88	1	306	33	12	12	41	1.79
6565122--6565162	21	2.0	21	95	0	73	31	21	26	19	1.97
6570422--6570450	3	9.7	3	100	0	58	68	0	0	31	0.89
6574594--6574679	32	2.7	32	92	0	145	44	12	9	33	1.75
6580346--6580773	143	3.0	143	100	0	856	38	10	14	37	1.80
6592632--6592658	13	2.1	13	100	0	54	37	18	14	29	1.91
6600899--6600925	2	13.5	2	100	0	54	0	51	0	48	1.00
6613401--6613439	15	2.6	16	84	15	57	74	0	0	25	0.82
6615246--6615582	94	3.6	94	99	0	665	47	11	12	28	1.76
6629062--6629105	2	22.0	2	100	0	88	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6638346--6638400	16	3.4	16	75	9	58	63	3	18	14	1.44
6640300--6640333	13	2.4	14	90	9	52	20	0	0	79	0.73
6643868--6643902	6	5.8	6	96	0	61	54	0	45	0	0.99
6648018--6648051	6	5.7	6	96	0	59	32	0	11	55	1.36
6650674--6650720	3	15.7	3	100	0	94	68	0	0	31	0.90
6652025--6652131	4	27.0	4	89	5	155	23	0	28	47	1.58
6656515--6656634	61	2.0	62	86	1	170	20	12	30	36	1.89
6661462--6661486	12	2.1	12	100	0	50	92	0	8	0	0.40
6670055--6670093	20	1.9	21	89	5	62	35	10	10	43	1.73
6670889--6671009	39	3.1	39	92	4	190	17	4	23	54	1.62
6685894--6685918	12	2.1	12	100	0	50	52	8	0	40	1.31
6698981--6699022	3	14.0	3	100	0	84	66	0	0	33	0.92
6705952--6705978	14	1.9	14	100	0	54	25	14	14	44	1.84
6717347--6717380	17	2.0	17	94	0	59	44	50	0	5	1.26
6721986--6722019	17	2.0	17	94	0	59	44	50	0	5	1.26
6725677--6725752	22	3.5	22	77	13	86	46	0	2	51	1.15
6725944--6726009	32	2.1	32	94	0	114	27	6	31	34	1.81
6726413--6726438	13	2.0	13	100	0	52	53	0	7	38	1.30
6732458--6732487	2	15.0	2	92	0	51	46	0	3	50	1.18
6737079--6737202	30	4.1	30	93	1	203	25	24	6	43	1.78
6737089--6737196	15	7.2	15	67	12	78	25	22	7	44	1.79
6741907--6741941	18	1.9	18	88	0	52	60	0	2	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6753871--6753951	23	3.4	22	64	20	54	39	12	4	43	1.64
6753861--6753957	50	1.9	50	97	0	185	37	12	5	45	1.64
6753879--6753958	26	3.2	26	65	31	73	37	13	6	42	1.70
6755174--6755202	7	4.1	7	100	0	58	55	0	13	31	1.39
6766236--6766265	5	6.0	5	100	0	60	40	0	0	60	0.97
6769145--6769208	33	1.9	33	100	0	128	28	17	10	43	1.82
6774705--6774748	22	1.9	24	86	9	65	22	11	9	56	1.62
6775503--6775542	14	2.7	15	88	7	64	40	45	0	15	1.46
6775505--6775549	22	2.1	21	87	4	63	40	44	0	15	1.47
6775503--6775551	15	3.3	15	85	5	55	40	42	0	16	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203