genome.fa.s17.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  165  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52140494--52140518	6	4.2	6	100	0	50	16	16	0	68	1.22
52146838--52146996	37	4.4	35	64	23	87	50	3	7	38	1.49
52146875--52147047	52	3.2	52	69	19	165	49	4	9	36	1.55
52146826--52147068	109	2.2	109	99	0	477	49	4	7	38	1.51
52146905--52147070	52	3.1	52	68	20	160	51	4	7	37	1.49
52149117--52149404	144	2.0	144	100	0	576	40	15	11	32	1.83
52153064--52153141	29	2.7	29	77	0	84	26	19	16	37	1.93
52153758--52153791	17	2.0	17	100	0	68	23	23	11	41	1.87
52154664--52154757	43	2.2	43	84	0	116	17	36	20	26	1.94
52155201--52155234	17	1.9	17	88	5	50	41	0	41	17	1.50
52156781--52156822	22	1.9	22	85	9	59	14	11	7	66	1.43
52174000--52174112	44	2.5	44	85	4	147	24	18	30	26	1.98
52174004--52174136	15	9.1	14	74	9	113	24	18	30	25	1.98
52173998--52174135	30	4.7	30	77	4	138	26	18	29	26	1.98
52173998--52174133	44	3.1	44	82	5	132	26	18	28	26	1.98
52176873--52176914	18	2.3	18	87	0	66	28	14	21	35	1.92
52178949--52180122	390	3.0	392	97	0	2203	21	13	18	46	1.83
52182544--52182975	216	2.0	217	95	1	787	26	13	18	41	1.88
52185275--52185363	33	2.7	33	92	0	142	14	8	53	22	1.68
52186657--52186689	6	5.5	6	100	0	66	33	0	48	18	1.48
52186821--52186976	63	2.5	63	88	4	226	28	23	22	25	1.99
52187574--52187603	2	15.0	2	100	0	60	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52188023--52188081	32	1.9	32	86	6	86	35	10	23	30	1.88
52202281--52202309	12	2.3	13	94	5	51	65	6	6	20	1.40
52207196--52207236	16	2.5	17	88	11	59	24	4	0	70	1.06
52214163--52214200	20	1.9	19	89	5	58	23	0	5	71	1.07
52215362--52215411	22	2.2	23	82	7	66	60	8	10	22	1.55
52216517--52216555	17	2.2	18	90	4	62	51	0	0	48	1.00
52228719--52228760	18	2.2	20	87	8	61	54	2	0	42	1.13
52230366--52230425	25	2.6	24	85	12	81	25	18	33	23	1.97
52230377--52230427	25	2.0	25	96	0	93	27	19	31	21	1.97
52233566--52233597	3	10.7	3	93	0	55	0	28	0	71	0.86
52240173--52240345	89	1.9	89	85	2	240	23	20	23	32	1.98
52240523--52240988	169	2.8	169	86	3	636	25	27	17	29	1.97
52241028--52241175	80	1.9	80	86	0	215	28	23	18	29	1.98
52240991--52241499	131	3.8	131	75	12	455	28	24	17	29	1.97
52241110--52241236	51	2.5	51	80	0	128	28	23	17	30	1.97
52240870--52241360	123	3.9	123	79	5	509	28	24	16	30	1.97
52240851--52241506	254	2.5	261	83	4	781	28	25	17	29	1.97
52241245--52241668	51	8.7	50	80	11	423	29	26	15	27	1.96
52241315--52241650	46	7.0	47	83	8	333	30	26	16	27	1.96
52241245--52241667	97	4.3	98	81	8	420	29	26	15	27	1.96
52242910--52242934	11	2.3	11	100	0	50	16	0	0	84	0.63
52243957--52243994	19	1.9	19	94	5	67	15	0	7	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52243942--52243995	20	2.5	22	80	19	69	16	3	7	72	1.22
52243993--52244026	6	5.7	6	92	0	59	29	0	2	67	1.05
52246146--52246291	37	4.0	37	93	1	242	24	21	16	36	1.94
52246255--52246523	46	5.6	46	84	10	340	28	22	14	34	1.93
52246298--52246517	52	4.3	52	85	8	299	27	22	14	35	1.93
52246255--52246523	98	2.7	98	93	0	457	28	22	14	34	1.93
52249570--52249604	16	2.2	16	89	0	52	42	22	17	17	1.88
52259953--52259990	20	1.9	20	84	10	51	52	5	2	39	1.38
52259957--52260016	27	2.1	27	84	6	68	55	1	5	38	1.32
52259981--52260052	34	2.2	33	82	9	85	54	0	2	43	1.15
52260329--52260408	38	2.1	38	86	4	108	42	1	3	52	1.27
52262916--52262951	16	2.2	16	95	0	63	25	5	8	61	1.46
52273094--52273130	19	1.9	19	94	0	65	56	0	2	40	1.13
52273610--52273674	25	2.7	23	75	11	67	47	6	9	36	1.60
52273626--52273682	25	2.3	25	96	0	105	56	5	7	31	1.49
52277148--52277412	43	6.2	42	79	6	199	33	27	15	23	1.95
52277193--52277412	86	2.5	86	83	4	248	32	29	16	22	1.95
52277140--52277410	129	2.1	129	81	2	312	33	27	15	23	1.95
52277717--52277859	66	2.2	65	83	6	171	12	23	19	44	1.84
52281950--52282058	39	2.8	39	92	1	184	52	26	2	18	1.59
52282187--52282261	37	2.0	37	89	0	114	36	5	14	44	1.68
52282260--52282308	9	5.4	9	90	0	62	28	10	24	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52284180--52284313	9	15.3	9	75	10	109	34	1	19	44	1.60
52284144--52284315	52	3.3	52	94	0	299	34	1	18	45	1.57
52284364--52284416	14	3.9	14	85	5	63	32	9	0	58	1.30
52284359--52284420	14	4.4	15	80	12	60	33	9	0	56	1.32
52287696--52287770	39	1.9	39	100	0	150	54	18	10	16	1.70
52289287--52289373	41	2.2	40	85	2	111	21	26	12	39	1.89
52303298--52303334	18	2.1	18	100	0	74	35	10	21	32	1.88
52304312--52304366	24	2.2	25	81	12	69	32	20	27	20	1.97
52311452--52311487	6	6.0	6	96	0	63	63	2	33	0	1.08
52324108--52324169	32	1.9	32	83	6	81	29	8	33	29	1.86
52324858--52324926	33	2.1	33	86	0	93	44	20	14	20	1.86
52342531--52342572	4	10.5	4	100	0	84	26	23	0	50	1.50
52342531--52342600	12	5.8	12	91	0	68	32	17	0	50	1.46
52364524--52364619	25	3.8	25	83	0	111	18	28	19	33	1.96
52364525--52364727	25	8.1	25	70	10	101	20	28	18	32	1.96
52366236--52366296	30	2.0	30	96	0	113	45	9	11	32	1.73
52369289--52369357	20	3.3	20	69	11	57	39	10	2	47	1.52
52369263--52369394	43	3.0	44	86	5	189	36	9	4	50	1.55
52370001--52370053	26	2.0	26	85	0	70	47	1	3	47	1.31
52370587--52370659	29	2.7	26	82	16	71	41	1	1	56	1.16
52370587--52370664	26	3.0	24	79	18	70	42	1	1	55	1.16
52375820--52375846	14	1.9	14	100	0	54	59	7	29	3	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52376870--52376897	11	2.5	11	100	0	56	57	0	10	32	1.33
52377876--52377977	31	3.4	30	87	5	143	30	7	16	45	1.76
52378098--52378291	43	4.5	43	88	0	280	25	18	25	30	1.97
52380417--52380461	22	2.0	22	86	8	63	53	4	2	40	1.33
52383420--52383461	20	2.1	20	95	0	75	14	4	35	45	1.66
52390490--52390753	87	3.0	87	92	0	438	43	13	17	25	1.86
52391225--52391269	22	2.0	22	86	8	63	53	4	2	40	1.33
52394228--52394269	20	2.1	20	95	0	75	14	4	35	45	1.66
52401302--52401565	87	3.0	87	93	0	456	43	13	17	26	1.85
52404761--52404810	25	2.0	25	96	0	91	22	12	16	50	1.77
52406966--52407012	21	2.2	22	92	3	78	21	38	19	21	1.94
52434268--52434334	36	1.9	34	81	6	80	22	29	20	26	1.99
52435222--52435273	26	2.0	26	96	0	95	25	46	13	15	1.82
52438114--52438147	17	2.0	17	100	0	68	17	5	29	47	1.71
52450523--52450582	30	2.0	30	96	0	111	56	15	3	25	1.54
52453868--52453908	21	2.0	21	90	0	64	31	19	24	24	1.98
52459672--52460076	152	2.7	149	84	3	508	36	9	18	35	1.83
52465579--52465609	16	1.9	16	93	0	53	35	6	9	48	1.62
52465872--52465911	20	2.0	20	85	0	53	50	7	5	37	1.53
52472497--52472534	20	2.0	20	89	5	60	47	7	7	36	1.62
52474169--52474193	6	4.2	6	100	0	50	16	36	0	48	1.46
52476260--52476338	9	8.8	9	97	0	122	22	10	27	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52476824--52476886	31	2.0	31	84	6	83	38	12	6	42	1.68
52484188--52484239	24	2.2	24	89	0	77	55	9	1	32	1.43
52486159--52486210	24	2.2	24	89	0	77	55	9	1	32	1.43
52495177--52495295	39	3.0	39	85	2	157	24	7	21	47	1.76
52496274--52496311	6	6.7	6	85	8	53	84	0	15	0	0.63
52496897--52497846	215	4.4	210	78	11	687	33	13	20	31	1.92
52497089--52497846	220	3.5	215	80	10	748	34	13	20	32	1.91
52499333--52499377	23	2.0	23	91	8	74	40	20	8	31	1.83
52505551--52506085	221	2.4	222	83	6	639	33	20	13	33	1.91
52507118--52507144	13	2.1	13	100	0	54	0	7	0	92	0.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203