genome.fa.s17.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  117  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37037667--37037719	15	3.9	14	81	13	58	39	0	0	60	0.97
37037668--37037721	6	8.0	7	80	15	53	40	0	0	59	0.98
37038801--37038879	40	2.0	40	94	0	140	37	5	15	41	1.69
37045401--37045493	30	3.2	30	66	25	90	46	7	12	33	1.70
37045409--37045499	27	3.3	27	64	24	71	45	7	12	35	1.70
37045383--37045496	57	2.0	57	100	0	228	47	7	12	33	1.68
37048769--37048798	6	5.0	6	100	0	60	83	0	0	16	0.65
37051331--37051365	15	2.3	15	100	0	70	40	25	5	28	1.78
37061403--37061515	57	2.0	57	82	0	136	39	14	15	30	1.87
37061968--37062820	305	2.8	304	87	4	1216	48	16	14	21	1.81
37064296--37064432	30	4.6	30	86	0	184	38	16	13	31	1.87
37064296--37064432	60	2.3	60	90	0	220	38	16	13	31	1.87
37065565--37065627	15	4.2	15	77	0	72	49	6	0	44	1.28
37069784--37069992	41	5.1	41	82	2	258	35	17	28	18	1.94
37069912--37069975	20	3.2	20	68	12	58	35	17	32	14	1.89
37088487--37088530	21	2.1	21	100	0	88	38	15	9	36	1.80
37091221--37091272	24	2.3	22	78	15	61	5	21	0	73	1.04
37091569--37091593	13	1.9	13	100	0	50	28	32	0	40	1.57
37091839--37091909	10	7.7	9	76	16	56	39	0	1	59	1.06
37091836--37091936	28	3.6	28	78	7	98	40	0	0	57	1.12
37091888--37091926	20	1.9	21	89	5	62	41	0	0	58	0.98
37091934--37092431	245	2.0	245	99	0	980	34	11	17	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37092303--37092475	90	1.9	88	82	4	213	35	9	18	36	1.84
37093749--37093792	23	1.9	23	81	9	54	25	4	9	61	1.45
37098811--37098902	47	2.0	47	86	4	132	27	5	29	38	1.79
37100377--37100436	27	2.1	28	87	12	86	35	20	16	28	1.94
37100605--37100744	40	3.7	36	75	13	104	25	19	21	33	1.97
37100725--37100886	69	2.4	68	81	1	189	22	22	22	32	1.98
37108439--37109225	49	16.6	49	91	4	1122	33	8	28	28	1.87
37114404--37114696	50	5.8	50	87	2	419	21	30	21	26	1.98
37114791--37114820	13	2.3	13	94	0	51	50	13	3	33	1.58
37116806--37116849	22	1.9	24	86	9	65	59	11	6	22	1.55
37122854--37122917	29	2.2	28	80	2	74	46	12	6	34	1.67
37128898--37129103	29	7.1	29	81	4	191	28	11	21	39	1.87
37128892--37129103	87	2.4	87	79	3	230	29	11	21	38	1.88
37128943--37129136	58	3.4	57	79	1	190	29	11	21	38	1.88
37136807--37137009	93	2.2	94	84	1	273	32	13	13	40	1.83
37136895--37137323	218	2.0	218	96	0	795	32	15	13	38	1.86
37137042--37137225	95	1.9	95	87	0	269	33	15	12	38	1.85
37137137--37137456	123	2.5	123	79	7	295	33	16	12	37	1.86
37137376--37137608	95	2.5	95	84	5	310	31	16	14	38	1.88
37164854--37164880	9	3.0	9	100	0	54	33	0	33	33	1.58
37164931--37164988	6	9.7	6	76	23	52	53	3	0	43	1.17
37166978--37167011	16	2.1	16	88	0	50	38	17	2	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37167012--37167065	18	3.0	18	71	10	56	46	11	0	42	1.39
37168410--37168448	20	2.0	20	90	5	62	35	5	5	53	1.45
37169105--37169129	12	2.1	12	100	0	50	24	36	24	16	1.94
37169263--37169330	9	7.6	9	84	0	91	42	26	7	23	1.80
37169262--37169347	27	3.2	27	88	0	118	45	24	6	23	1.77
37176767--37176800	15	2.3	15	94	0	59	58	0	8	32	1.29
37185224--37185428	100	2.0	100	98	0	392	30	17	19	32	1.95
37186712--37186768	21	2.8	20	69	10	51	36	1	14	47	1.54
37188599--37188712	40	2.9	41	88	3	171	40	21	18	19	1.92
37194396--37194435	20	2.0	20	95	0	71	32	25	12	30	1.92
37202524--37202810	44	6.4	45	67	7	154	31	18	22	27	1.97
37202524--37202824	133	2.2	132	78	4	327	31	18	21	27	1.97
37202666--37202848	89	2.1	88	79	4	190	32	18	21	27	1.96
37206126--37206309	43	4.3	43	85	0	235	19	18	34	28	1.95
37208350--37208850	47	10.6	47	93	2	833	29	29	7	32	1.86
37208350--37208850	143	3.5	141	94	1	840	29	29	7	32	1.86
37208350--37208850	190	2.6	191	93	1	859	29	29	7	32	1.86
37212878--37213829	40	23.8	40	98	0	1823	24	29	22	23	1.99
37214697--37214796	51	2.0	51	97	0	191	39	14	9	38	1.77
37215095--37215171	37	2.1	37	90	0	118	25	31	20	22	1.98
37216566--37216701	40	3.4	40	84	5	166	24	25	24	25	2.00
37219326--37219462	42	3.3	42	80	0	157	41	18	22	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37219354--37219484	21	6.3	21	68	4	68	39	16	23	19	1.92
37219547--37219618	24	3.0	24	84	8	92	25	22	4	48	1.68
37225576--37225617	22	2.0	21	85	4	57	73	0	26	0	0.83
37226993--37227031	18	2.2	18	85	0	51	48	10	7	33	1.66
37227126--37227179	18	2.9	19	83	10	67	53	9	0	37	1.33
37227143--37227179	19	2.0	18	89	5	56	56	10	0	32	1.34
37227314--37227346	16	2.0	17	88	5	50	33	3	12	51	1.54
37227985--37228037	16	3.3	16	76	10	63	35	24	5	33	1.79
37229197--37229270	4	17.0	4	77	18	53	0	21	5	72	1.04
37229198--37229249	24	2.2	24	89	0	77	0	23	3	73	1.00
37230275--37230324	25	2.0	25	88	7	75	44	0	6	50	1.26
37233055--37233092	20	1.9	20	88	0	58	42	0	13	44	1.43
37242650--37242704	21	2.9	19	76	15	60	7	23	1	67	1.26
37260122--37260156	18	2.0	17	88	5	52	60	0	0	40	0.97
37260105--37260453	144	2.4	144	98	0	671	47	3	3	45	1.36
37260266--37260300	18	2.0	17	88	5	52	54	0	0	45	0.99
37260226--37260296	27	2.6	27	77	8	72	50	2	0	46	1.16
37260410--37260444	18	2.0	17	88	5	52	54	0	0	45	0.99
37260425--37260612	61	3.1	61	67	14	163	49	6	2	41	1.41
37260393--37260615	120	1.9	120	94	0	392	49	6	2	42	1.40
37260605--37260651	17	2.9	16	78	18	53	46	2	6	44	1.40
37260624--37260657	17	2.0	17	94	0	59	50	0	5	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37264502--37264532	15	2.1	15	93	0	53	45	9	9	35	1.70
37274475--37274539	34	1.9	34	90	0	103	9	24	4	61	1.45
37274640--37274696	17	3.4	17	68	7	53	66	24	1	7	1.26
37274636--37274755	33	3.3	35	84	11	145	67	21	0	10	1.25
37274636--37274736	39	2.8	33	85	10	121	67	22	0	8	1.25
37274662--37274779	40	3.0	39	87	8	159	66	19	1	12	1.33
37279716--37279745	12	2.5	12	94	0	51	0	56	0	43	0.99
37282466--37282667	108	1.9	108	96	0	377	29	19	20	30	1.97
37287063--37287117	26	2.1	27	82	3	67	52	7	3	36	1.47
37287117--37287156	16	2.6	16	88	4	55	77	2	12	7	1.07
37287670--37287817	46	3.1	46	64	17	104	42	4	18	35	1.69
37287670--37287891	96	2.3	96	86	5	306	39	4	19	37	1.71
37287924--37288339	126	3.3	126	92	0	672	33	18	21	26	1.96
37292433--37292525	11	8.5	11	86	3	107	44	0	32	23	1.54
37292949--37292988	13	2.8	14	85	14	55	0	22	0	77	0.77
37297440--37297468	6	4.8	6	100	0	58	0	31	0	68	0.89
37297857--37297917	29	2.1	29	81	6	70	40	6	0	52	1.27
37311666--37311850	101	1.8	102	83	3	248	24	17	27	30	1.97
37311859--37311947	45	2.0	45	95	0	160	24	17	24	32	1.97
37317555--37317635	26	3.2	25	64	22	60	24	16	27	32	1.96
37317642--37317731	45	2.0	46	91	2	146	23	17	25	33	1.96
37321525--37321631	36	3.0	36	82	5	137	28	20	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37321688--37321731	21	2.1	21	91	0	70	40	6	31	20	1.79
37321709--37322132	51	8.1	51	71	8	267	30	17	25	26	1.97
37321597--37321822	123	1.8	123	87	3	339	29	16	26	27	1.97
37321698--37322153	159	2.9	159	92	0	752	31	17	25	25	1.97
37322203--37322451	138	1.8	138	82	5	324	30	19	20	29	1.97
37322151--37322508	182	2.0	182	84	4	472	31	18	20	28	1.97
37322146--37322505	44	8.0	44	77	8	314	31	18	21	28	1.97
37322146--37322593	226	2.0	227	93	0	763	31	18	20	29	1.96
37322468--37322552	44	1.9	44	81	9	102	34	16	17	31	1.93
37322624--37322707	44	1.9	44	90	0	132	33	16	20	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203