genome.fa.s17.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Length:  65570391

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   

This is table  173  of  203  ( 24357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54973927--54974104	50	3.5	50	83	8	191	29	20	25	23	1.99
54980095--54980319	40	5.7	40	84	5	242	26	25	22	25	2.00
54980096--54980319	119	1.9	120	81	8	278	26	25	22	25	2.00
54983994--54984147	77	2.0	77	100	0	308	28	24	20	25	1.99
54984693--54985346	327	2.0	327	99	0	1290	26	27	17	28	1.98
54987306--54987455	75	2.0	75	96	2	275	26	19	12	42	1.86
54987681--54987804	62	2.0	62	98	0	239	29	29	14	25	1.95
54988655--54988997	40	8.6	40	91	4	484	25	27	21	25	1.99
54991220--54991528	87	3.6	87	100	0	618	40	6	14	37	1.73
54991770--54991962	50	3.7	50	76	9	138	27	21	27	22	1.99
54992097--54992158	25	2.5	25	87	10	99	48	8	19	24	1.75
55000997--55001028	16	1.9	17	93	6	57	43	9	3	43	1.52
55001443--55001536	24	3.9	24	91	2	145	32	17	23	26	1.96
55006508--55006546	15	2.6	15	87	0	60	17	25	12	43	1.85
55010879--55010915	17	2.2	17	90	0	56	48	8	18	24	1.75
55021934--55021988	19	2.7	21	91	5	87	38	9	12	40	1.75
55022985--55023028	22	2.0	23	82	13	56	22	6	13	56	1.61
55023094--55023281	94	2.0	94	100	0	376	32	15	14	36	1.89
55026731--55026797	26	2.5	26	78	7	73	20	14	5	58	1.58
55029060--55029203	44	3.3	43	66	5	101	26	31	22	19	1.98
55028969--55029619	88	7.4	88	87	0	901	28	26	23	21	1.99
55029434--55029571	43	3.2	43	65	4	114	27	27	26	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55030073--55030184	44	2.5	44	89	2	172	30	22	19	27	1.98
55030628--55030703	21	3.7	21	89	3	111	36	10	13	39	1.79
55030659--55030726	21	3.0	24	87	8	90	36	7	16	39	1.76
55037145--55037184	18	2.2	18	86	0	53	32	27	15	25	1.95
55037154--55037196	18	2.4	18	88	0	59	32	30	13	23	1.93
55037136--55037195	27	2.2	27	79	5	68	30	28	13	28	1.94
55043610--55043698	18	4.9	18	80	0	88	33	29	11	25	1.91
55045225--55045306	41	2.0	41	95	0	146	41	3	37	17	1.67
55056557--55056625	25	2.6	27	78	15	81	68	1	2	27	1.13
55056572--55056625	26	2.1	25	83	10	65	68	1	1	27	1.10
55056585--55056644	30	2.0	29	81	9	68	65	3	3	28	1.25
55057315--55057367	24	2.2	24	83	6	63	30	5	9	54	1.55
55068193--55068245	13	4.1	13	76	9	54	41	28	3	26	1.73
55069682--55069775	40	2.3	40	80	3	100	23	21	19	36	1.95
55085469--55085542	24	3.1	24	82	0	94	25	21	8	44	1.79
55086139--55086195	23	2.4	24	85	2	71	26	24	7	42	1.80
55098710--55098845	50	2.6	52	81	11	161	25	19	30	24	1.98
55098754--55098890	50	2.7	50	84	2	150	26	20	29	23	1.99
55099146--55099196	12	4.2	12	78	9	50	56	3	21	17	1.57
55099147--55099185	20	2.0	20	90	10	62	56	5	23	15	1.59
55112065--55112125	25	2.4	25	81	10	72	39	3	0	57	1.15
55113013--55113037	3	8.3	3	100	0	50	68	0	32	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55126915--55128339	40	35.6	40	95	0	2555	27	20	27	24	1.99
55131049--55131119	27	2.6	27	84	4	81	21	29	18	30	1.97
55131073--55131156	27	3.1	27	81	6	91	17	25	20	36	1.94
55131231--55131346	40	2.7	43	81	6	139	26	21	10	41	1.85
55135583--55135707	62	2.0	62	95	0	223	36	19	17	26	1.94
55136047--55136200	61	2.5	61	88	3	222	19	16	22	40	1.91
55136320--55136397	30	2.6	30	86	8	97	17	19	24	38	1.93
55141385--55141750	41	8.7	42	70	8	235	30	21	19	29	1.97
55141339--55141613	83	3.3	83	86	3	365	30	21	18	28	1.97
55141342--55141660	169	1.9	168	81	8	389	30	21	19	28	1.97
55141589--55141787	44	4.7	43	71	14	160	29	22	19	29	1.98
55141510--55141798	127	2.3	127	91	0	470	30	22	19	28	1.98
55141996--55142191	85	2.3	84	86	5	272	32	21	19	27	1.97
55142090--55142325	127	1.9	127	92	0	400	28	20	20	30	1.98
55143211--55143243	15	2.1	16	88	5	50	51	12	15	21	1.75
55143325--55143404	40	2.0	40	90	0	124	25	17	21	36	1.95
55147064--55147098	16	2.2	16	94	0	61	42	20	17	20	1.89
55148882--55148926	22	2.0	23	86	4	65	55	4	6	33	1.46
55148901--55149061	61	2.6	61	80	13	161	57	2	6	33	1.39
55148886--55149197	154	2.0	156	90	3	488	55	2	6	35	1.39
55149252--55149286	3	11.3	3	93	6	61	68	0	0	31	0.90
55149252--55149283	16	2.0	16	100	0	64	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55149874--55149905	16	1.9	17	93	6	57	81	3	0	15	0.82
55154123--55154165	10	4.3	10	82	11	61	69	0	2	27	1.00
55154115--55154165	20	2.7	20	90	6	79	68	0	1	29	1.00
55154491--55154515	7	3.6	7	100	0	50	12	0	0	88	0.53
55154531--55154731	89	2.3	89	81	2	235	31	8	20	39	1.83
55157393--55157499	34	3.1	34	62	19	78	41	20	9	28	1.83
55157368--55157506	68	2.0	68	97	0	260	40	23	8	28	1.84
55158354--55158389	5	7.2	5	100	0	72	80	0	0	19	0.71
55164256--55164303	24	1.9	26	87	8	73	22	8	8	60	1.52
55165859--55165904	18	2.5	19	82	13	60	19	0	26	54	1.44
55168428--55168485	9	6.4	9	74	7	55	41	22	10	25	1.85
55173868--55174328	117	3.9	117	98	0	868	40	6	23	28	1.80
55173868--55174574	234	2.9	241	90	7	1047	40	7	23	29	1.81
55174269--55174385	57	2.1	57	91	0	189	38	5	23	32	1.79
55174338--55174473	46	3.1	46	74	14	160	34	8	22	34	1.84
55180547--55180598	23	2.3	23	96	3	97	32	7	26	32	1.85
55198176--55198242	33	2.0	33	94	0	116	28	7	22	41	1.80
55199543--55199572	3	10.0	3	100	0	60	33	0	33	33	1.58
55200503--55200654	82	1.9	81	81	5	189	37	15	7	39	1.75
55200503--55200672	82	2.1	81	80	4	180	38	15	7	38	1.76
55201550--55201631	43	1.9	43	82	5	103	21	17	29	31	1.96
55203131--55203182	26	2.0	26	100	0	104	38	7	23	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55204242--55204306	34	1.9	34	93	0	112	27	23	23	26	2.00
55204577--55204911	27	11.8	27	82	11	404	35	15	17	31	1.91
55204601--55204886	60	4.9	60	93	3	469	34	15	17	31	1.92
55205900--55205974	33	2.3	33	83	4	98	41	13	24	21	1.88
55207422--55207461	17	2.4	17	95	0	71	62	10	10	17	1.53
55226459--55226491	11	3.0	11	83	16	50	36	27	0	36	1.57
55227844--55227885	22	2.0	20	90	4	57	35	9	14	40	1.78
55232952--55233004	27	2.0	27	96	3	99	28	33	22	15	1.94
55232879--55233313	102	4.3	102	95	0	755	30	28	20	20	1.98
55240574--55241007	102	4.3	102	93	1	665	32	27	19	20	1.97
55240719--55240975	33	7.6	33	68	25	153	33	28	19	18	1.95
55240852--55240904	27	2.0	27	96	0	97	28	30	22	18	1.98
55240954--55241005	27	1.9	27	92	0	86	26	28	26	17	1.97
55246407--55246460	22	2.4	23	84	9	76	40	18	27	12	1.87
55247385--55247416	16	1.9	17	93	6	57	3	18	3	75	1.08
55263734--55263772	2	19.5	2	94	0	69	0	2	48	48	1.15
55266681--55266724	23	1.9	23	81	9	54	40	0	9	50	1.34
55274045--55274093	22	2.2	22	92	0	80	18	53	14	14	1.74
55282082--55282210	50	2.6	50	78	7	129	27	20	19	31	1.97
55282147--55282210	25	2.5	26	73	16	62	31	20	20	28	1.97
55283732--55283784	27	2.0	27	100	0	106	22	0	18	58	1.39
55283735--55283792	27	2.1	27	87	0	80	27	0	20	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55303765--55303812	4	12.5	4	76	24	50	50	0	0	50	1.00
55303765--55303821	16	3.7	16	78	21	68	49	0	1	49	1.11
55303765--55303815	19	2.9	17	81	16	59	49	0	0	50	1.00
55303765--55303832	30	2.2	30	87	7	93	48	2	1	47	1.26
55303766--55303809	22	2.0	22	86	8	63	52	0	0	47	1.00
55308688--55308726	9	4.6	9	81	12	55	48	0	38	12	1.42
55312052--55312188	50	2.8	51	82	8	160	32	25	16	25	1.96
55313520--55313705	50	3.7	50	89	0	282	19	30	23	26	1.98
55313800--55313829	13	2.3	13	94	0	51	50	13	3	33	1.58
55316469--55316700	67	3.5	67	84	0	284	24	27	18	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203